Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002669.1 Hibiscus syriacus cultivar Beakdansim tig00005484_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114860

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9021--9118
47
2.1
47
96
0
178
42
6
1
50
1.34
11214--11265
2
28.5
2
76
18
51
44
0
0
55
0.99
11220--11301
32
2.5
34
88
9
134
40
0
0
59
0.97
11212--11302
34
2.7
33
88
10
130
40
0
0
59
0.97
13369--13530
77
2.0
81
79
11
174
38
9
12
39
1.75
13972--14358
104
3.9
100
79
5
363
37
13
10
37
1.81
14533--14776
112
2.1
116
87
3
361
36
11
10
41
1.75
14812--14969
77
2.0
78
81
6
187
39
15
7
36
1.76
14876--15074
105
1.9
105
85
2
274
38
15
6
40
1.73
14980--15205
77
2.9
77
86
1
310
37
16
6
39
1.75
15053--15168
40
3.0
40
65
15
107
40
18
5
35
1.73
18483--18512
12
2.5
12
100
0
60
33
20
10
36
1.86
19966--20038
36
2.0
36
82
10
87
50
2
0
46
1.15
21280--21357
32
2.4
32
85
4
95
28
20
14
37
1.91
23458--23690
117
2.0
116
84
7
303
41
9
13
35
1.77
33799--33825
13
2.1
13
100
0
54
14
0
0
85
0.61
39893--40015
17
7.2
17
67
21
51
71
0
21
6
1.13
39885--40015
26
5.1
25
68
27
78
71
0
21
6
1.12
39936--39992
19
3.2
19
82
7
66
73
0
21
5
1.02
39970--40020
17
3.3
15
82
12
59
76
0
15
7
1.00
41238--41268
15
2.1
15
100
0
62
48
12
6
32
1.67
41353--41923
51
10.8
51
90
4
594
28
16
27
28
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41363--41945
110
5.5
107
86
8
553
28
16
26
28
1.97
41364--41954
55
11.1
55
89
4
320
28
16
26
28
1.97
50835--50910
17
4.3
17
71
23
59
73
1
18
6
1.11
50834--50949
54
2.2
53
82
14
134
72
2
18
6
1.17
50835--50910
18
4.3
16
73
17
62
73
1
18
6
1.11
50933--50966
9
3.7
9
88
7
50
82
0
11
5
0.83
52274--52698
51
8.1
51
89
4
571
28
14
27
28
1.96
52273--52762
51
9.3
55
89
2
477
29
15
26
28
1.96
53707--53752
23
2.0
22
83
4
56
32
2
21
43
1.65
54420--54446
13
2.1
13
100
0
54
14
0
0
85
0.61
56516--56558
18
2.4
18
84
7
52
23
9
2
65
1.34
60358--60413
16
3.3
16
78
9
58
53
7
17
21
1.67
62121--62163
18
2.4
18
88
7
61
25
9
0
65
1.22
69952--69998
18
2.5
19
86
10
62
55
2
6
36
1.37
71585--71638
3
18.0
3
84
7
74
62
0
0
37
0.95
75906--75946
21
2.0
21
85
9
57
46
2
0
51
1.14
76028--76064
20
1.9
19
89
10
58
45
10
24
18
1.81
76216--76248
15
2.2
15
94
0
57
54
0
0
45
0.99
80061--80109
13
3.5
13
78
13
53
69
0
2
28
1.00
80063--80123
32
1.9
32
83
12
81
67
0
4
27
1.11
80716--80749
13
2.6
13
90
0
50
70
0
20
8
1.13
80901--80939
20
2.0
21
90
10
64
56
2
5
35
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
86905--86971
24
2.8
24
86
4
100
28
22
26
22
1.99
89573--89635
11
5.9
11
75
14
60
39
1
0
58
1.07
97191--97300
35
3.1
35
79
10
84
40
9
8
41
1.66
97244--97320
35
2.2
35
92
0
127
38
0
20
40
1.53
99565--99675
3
37.0
3
100
0
222
66
0
0
33
0.92
100874--100950
29
2.7
28
75
18
70
55
2
7
33
1.42
102045--102095
3
16.7
3
95
4
93
66
0
0
33
0.92
102311--102367
22
2.7
21
76
10
53
50
3
0
45
1.18
104042--104103
24
2.7
23
75
5
63
56
0
9
33
1.32
104096--104184
44
2.0
43
85
8
117
50
4
10
34
1.56
104712--104769
22
2.7
22
83
2
82
51
12
15
20
1.75
109382--109471
45
2.0
45
87
8
130
43
12
3
41
1.58
110605--110652
17
2.5
20
77
19
57
37
16
12
33
1.86
112475--112551
2
39.0
2
91
7
122
50
1
1
46
1.17

Tables:   1

The End!