genome.fa.s267.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000267.1 Hibiscus syriacus cultivar Beakdansim tig00000490_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126078

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1341--1367	14	1.9	14	100	0	54	25	0	22	51	1.48
4309--4343	18	1.9	18	100	0	70	28	17	17	37	1.92
4952--5044	22	4.2	24	72	23	71	75	5	16	3	1.12
4979--5041	14	4.4	14	73	21	51	74	7	17	0	1.05
4980--5048	32	2.2	32	84	5	86	76	5	17	0	0.97
6249--8774	4	634.0	4	92	0	3868	45	25	4	24	1.71
9081--9211	37	3.5	38	79	6	99	35	18	13	32	1.90
9103--9227	37	3.3	38	80	3	146	33	19	14	32	1.92
9559--9660	29	3.6	27	78	15	100	31	10	16	41	1.83
9588--9772	94	2.0	95	88	3	277	31	10	15	42	1.81
9677--9754	30	2.7	29	75	24	83	33	7	15	43	1.75
9683--9749	32	2.2	31	89	5	100	38	8	13	38	1.76
10075--10416	134	2.6	133	82	4	377	28	30	17	23	1.97
10075--10455	134	2.8	133	80	4	322	27	31	17	24	1.97
10351--10474	39	3.0	40	68	18	110	25	31	20	23	1.98
10625--10685	3	21.0	3	85	6	81	32	0	3	63	1.10
13272--13310	21	1.9	20	89	5	60	46	0	0	53	1.00
16208--16656	182	2.5	182	92	2	726	27	14	14	43	1.84
16530--16992	112	4.1	112	92	1	698	25	14	14	45	1.83
16552--16990	225	2.0	223	90	0	698	24	14	14	46	1.82
17127--17166	20	2.0	20	90	0	62	45	7	25	22	1.78
17321--17394	38	2.0	37	81	5	87	48	4	1	45	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18548--18583	12	3.0	12	100	0	72	75	0	0	25	0.81
18548--18581	6	5.7	6	85	0	50	76	0	0	23	0.79
19320--19404	36	2.4	35	80	5	100	45	25	0	28	1.54
22893--22969	35	2.2	35	85	0	100	32	0	22	45	1.53
23742--23906	85	2.0	83	86	4	233	45	11	4	38	1.62
28772--28846	3	24.7	3	86	2	105	60	0	4	36	1.16
29178--29955	112	7.0	111	93	2	1267	25	18	16	39	1.91
30675--31294	83	7.5	83	96	1	1102	37	21	13	27	1.91
32450--32516	25	2.6	25	86	13	91	0	16	0	83	0.64
32452--32520	15	4.5	16	87	12	101	0	15	0	84	0.63
43111--43148	15	2.8	13	88	11	51	68	2	5	23	1.23
45273--45355	3	27.7	3	87	0	121	60	0	3	36	1.14
45264--45349	15	5.5	15	74	15	68	58	0	3	38	1.15
50850--50890	20	2.1	20	86	13	59	51	4	17	26	1.65
55246--55275	3	10.0	3	100	0	60	66	0	0	33	0.92
55501--56826	113	11.8	113	93	2	2145	29	20	13	36	1.91
55501--56826	561	2.4	565	91	3	2217	29	20	13	36	1.91
57248--57352	52	2.0	52	100	0	210	33	17	13	36	1.88
57689--58118	115	3.7	115	98	0	808	32	21	13	32	1.92
58022--58232	93	2.3	93	97	0	395	35	21	14	28	1.93
59595--59645	4	12.8	4	78	15	52	0	15	0	84	0.63
59588--59645	11	5.3	11	82	14	66	0	17	0	82	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59587--59631	23	2.0	23	90	0	72	0	15	0	84	0.62
59585--59649	20	3.0	21	78	15	62	0	16	0	83	0.66
59584--59646	16	3.8	16	87	6	81	0	17	0	82	0.67
66905--66936	15	2.1	15	94	0	55	46	9	18	25	1.79
72364--72405	3	14.0	3	94	0	75	64	0	0	35	0.94
72668--72710	12	3.1	15	77	19	56	30	32	6	30	1.84
72662--72706	12	3.5	12	77	16	54	33	35	4	26	1.77
72662--72732	27	2.4	29	88	9	101	33	33	4	28	1.77
72662--72744	31	2.8	31	85	7	93	33	31	7	27	1.84
72962--73150	98	1.9	98	93	2	326	32	13	15	38	1.87
73173--73215	2	21.5	2	100	0	86	48	0	0	51	1.00
80373--80401	11	2.6	11	100	0	58	20	6	31	41	1.79
80360--80401	11	3.8	12	90	6	54	26	4	28	40	1.76
82944--83266	136	2.3	137	81	3	380	44	13	11	30	1.79
83617--83664	16	2.9	16	79	17	53	52	2	14	31	1.54
87258--87290	16	2.1	16	94	0	57	39	12	27	21	1.88
88111--88255	77	1.9	79	82	8	190	42	7	5	44	1.56
98615--98667	19	2.8	20	74	5	56	0	28	1	69	0.99
122152--122244	20	4.7	20	94	2	161	21	22	24	31	1.98
122152--122264	39	2.8	40	88	5	140	23	22	23	30	1.99
122152--122264	59	1.9	60	85	5	158	23	22	23	30	1.99

Tables:   1

The End!