genome.fa.s2670.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002670.1 Hibiscus syriacus cultivar Beakdansim tig00005485_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  180730

Tables:   1   

This is table  1  of  1  ( 114 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2948--3036	3	29.7	3	88	4	135	35	2	0	61	1.08
4442--4482	13	3.1	14	77	22	52	36	0	0	63	0.95
10049--10088	11	3.5	11	90	6	62	85	0	15	0	0.61
10061--10094	18	1.9	18	94	5	61	85	0	14	0	0.60
10050--10088	12	3.3	12	96	3	71	87	0	12	0	0.55
15032--15110	22	3.6	22	86	3	97	34	13	13	37	1.85
15547--16401	113	7.5	113	92	1	1138	38	13	19	28	1.90
16727--16809	3	27.7	3	95	0	148	34	1	0	63	1.02
17930--17971	15	3.0	15	80	13	54	40	0	0	59	0.97
20158--20197	20	1.9	20	85	10	53	20	10	10	60	1.57
23548--23577	11	2.7	11	89	0	51	86	0	13	0	0.57
28379--28457	22	3.6	22	86	3	97	34	13	13	37	1.85
28891--29757	113	7.6	113	91	1	1110	38	13	18	28	1.90
30074--30159	3	28.7	3	92	0	136	36	2	0	61	1.09
33825--33864	20	1.9	20	85	10	53	20	10	10	60	1.57
37222--37253	17	1.9	16	93	6	55	84	0	15	0	0.63
42189--42267	22	3.6	22	86	3	97	34	13	13	37	1.85
42701--43567	113	7.6	113	92	1	1144	38	13	18	28	1.90
43883--43950	3	22.7	3	90	0	109	35	2	0	61	1.11
43946--43986	11	3.8	10	87	9	55	56	2	0	41	1.13
52746--52786	20	2.0	20	85	0	55	21	0	36	41	1.54
54214--54249	18	2.0	18	100	0	72	55	11	22	11	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54194--54250	18	2.8	22	82	15	70	59	12	17	10	1.60
56194--56245	15	3.5	15	94	0	86	5	13	69	11	1.35
58547--58574	6	4.7	6	100	0	56	14	67	0	17	1.22
60580--60641	23	2.7	23	94	0	106	45	16	16	22	1.85
61579--61691	42	2.7	43	83	12	146	50	1	0	46	1.17
61598--61629	10	3.1	11	86	13	50	43	0	0	56	0.99
61598--61655	21	2.7	21	76	17	57	48	0	1	50	1.11
80691--80730	18	2.2	18	90	0	62	60	10	0	30	1.30
81754--81894	18	8.4	17	70	17	91	47	4	2	45	1.36
81741--81958	13	16.3	13	66	19	76	47	5	3	43	1.44
81736--81820	11	7.4	11	70	19	57	51	3	0	44	1.18
81760--81914	83	1.9	83	94	0	274	45	5	3	45	1.44
81948--81987	18	2.2	18	95	0	71	57	7	5	30	1.48
82022--82057	15	2.4	15	90	0	54	52	5	2	38	1.39
84423--84467	21	2.1	21	87	0	63	31	28	24	15	1.96
85799--85826	14	2.0	14	100	0	56	28	7	28	35	1.84
85927--86241	149	2.1	149	97	1	587	27	16	20	34	1.94
86209--86253	23	2.0	23	86	8	65	22	24	26	26	2.00
89378--89422	21	2.1	21	87	0	63	31	28	24	15	1.96
90754--90781	14	2.0	14	100	0	56	28	7	28	35	1.84
90882--91193	147	2.1	148	96	1	583	27	16	20	34	1.95
91161--91205	23	2.0	23	90	0	72	22	26	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93262--93307	25	1.9	24	86	8	67	39	4	4	52	1.41
93679--93718	21	1.9	21	89	0	62	10	25	40	25	1.86
93699--93761	20	2.9	21	79	9	65	15	25	34	23	1.95
99866--99928	2	32.0	2	78	15	60	50	1	4	42	1.32
100321--100400	7	11.6	7	73	17	51	46	31	0	22	1.52
100321--100400	14	5.8	14	77	2	72	46	31	0	22	1.52
100321--100400	21	3.9	21	78	3	90	46	31	0	22	1.52
100415--100459	24	1.9	23	86	4	63	46	8	6	37	1.61
100418--100488	37	1.9	37	85	5	99	40	9	9	39	1.72
100484--100572	24	4.0	22	80	12	94	41	6	7	43	1.60
100615--100820	21	9.5	21	67	20	77	41	6	5	47	1.52
100679--100959	31	8.8	31	72	22	99	44	3	2	50	1.31
100685--100939	65	3.9	65	79	14	251	44	3	2	49	1.32
100739--100800	14	4.4	14	75	18	56	46	6	1	45	1.38
100643--100913	131	2.1	132	81	10	324	42	4	3	49	1.40
100878--100959	21	3.8	20	75	21	69	48	0	0	51	1.00
100851--100970	43	2.8	42	79	15	120	48	0	0	50	1.12
100878--100970	15	6.6	15	77	20	78	48	0	1	50	1.07
100856--100974	14	9.0	13	75	19	88	49	0	0	48	1.12
101653--101713	30	2.0	30	90	6	97	47	36	1	14	1.55
101657--101739	6	14.0	6	70	12	55	44	36	2	16	1.61
101658--101739	35	2.3	35	87	2	110	45	36	2	15	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101647--101805	12	12.8	12	70	17	67	45	40	1	13	1.51
101723--101814	6	15.5	6	76	10	91	47	44	0	7	1.31
101747--101822	23	3.3	23	81	9	91	46	44	0	9	1.35
101647--101808	30	5.2	30	71	14	87	45	40	1	12	1.51
102078--102308	102	2.3	102	93	1	392	22	8	18	50	1.73
103864--103891	3	9.3	3	100	0	56	0	32	0	67	0.91
105150--105182	12	2.8	12	90	9	50	39	3	0	57	1.14
105144--105182	11	3.5	11	86	6	51	41	2	2	53	1.28
105432--105478	14	3.7	14	71	26	50	51	4	0	44	1.21
105430--105479	23	2.1	24	96	3	93	48	4	0	48	1.20
105734--105784	16	3.2	16	94	0	84	41	13	25	19	1.88
107452--107505	26	2.1	26	92	0	90	35	20	14	29	1.93
108341--108396	2	28.0	2	100	0	112	50	0	0	50	1.00
109251--109521	142	1.9	142	87	3	402	25	16	25	32	1.96
109370--109900	187	2.8	186	90	0	810	25	15	25	32	1.95
121448--121696	31	8.0	31	96	0	437	19	18	22	38	1.93
126259--126383	31	4.0	31	91	2	189	20	17	23	39	1.92
127623--127670	24	2.0	24	100	0	96	20	37	12	29	1.90
131048--131101	23	2.3	23	96	0	99	22	33	12	31	1.92
134023--134069	22	2.1	22	100	0	94	46	0	0	53	1.00
140289--140344	3	18.3	3	96	3	103	32	0	0	67	0.91
141006--141042	19	1.9	19	94	0	65	51	5	2	40	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142997--143038	3	13.7	3	90	5	66	61	0	2	35	1.09
143063--143117	22	2.6	21	76	2	56	43	7	5	43	1.55
143164--143244	24	3.7	22	76	21	80	46	3	1	48	1.27
143286--143334	2	24.0	2	95	4	89	48	2	0	48	1.12
149559--149657	3	33.7	3	88	8	150	63	0	1	35	1.01
149828--150288	36	12.8	36	90	1	656	18	23	21	36	1.95
150466--151517	62	16.9	62	86	2	1243	35	15	21	27	1.94
150466--151517	186	5.6	185	85	4	1378	35	15	21	27	1.94
156004--156033	7	4.3	7	95	0	51	30	13	40	16	1.87
158651--158734	3	28.7	3	90	4	136	63	0	1	35	1.03
166783--166861	38	2.1	38	87	0	113	30	15	16	37	1.89
166999--167115	20	5.7	19	67	11	54	25	24	23	25	2.00
167035--167121	41	2.1	42	89	2	131	28	24	25	21	1.99
167269--167382	42	2.7	41	86	1	147	27	21	21	28	1.99
167836--167987	36	4.4	36	73	15	149	27	22	12	37	1.90
167671--167987	102	3.1	101	80	5	332	31	19	11	36	1.88
167872--168053	66	2.8	68	82	9	209	26	22	12	37	1.90
168030--168316	75	3.8	74	83	3	333	30	17	14	37	1.90
168152--168267	36	3.1	36	62	7	88	27	18	14	38	1.90
168044--168316	150	1.8	149	87	2	368	30	18	13	36	1.90
168347--168389	13	3.3	13	96	0	77	41	6	20	30	1.79
168602--169607	91	11.1	91	91	1	1644	37	15	22	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171099--171132	17	2.0	17	100	0	68	23	17	11	47	1.81
175663--175848	93	2.0	94	85	3	250	30	11	24	33	1.90
178554--178694	55	2.6	55	90	1	221	39	13	25	21	1.90
179340--179375	18	2.1	18	89	5	56	55	0	25	19	1.43

Tables:   1

The End!