genome.fa.s2671.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002671.1 Hibiscus syriacus cultivar Beakdansim tig00005486_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67558

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1940--2000	24	2.5	24	91	0	95	42	1	31	24	1.64
2424--2529	46	2.3	46	100	0	212	32	16	21	29	1.96
2388--2594	111	1.9	110	88	7	312	30	21	19	28	1.97
5199--5747	240	2.3	240	85	5	740	31	17	16	34	1.92
6014--6465	133	3.4	130	79	6	453	35	19	14	30	1.92
6656--6708	3	18.3	3	81	18	60	28	0	1	69	0.99
6845--6904	26	2.3	26	85	0	75	20	48	10	21	1.78
9012--9362	128	2.7	131	85	2	510	31	10	17	40	1.84
9844--9870	14	1.9	14	100	0	54	44	11	0	44	1.39
10930--11081	6	25.2	6	69	19	86	77	0	21	1	0.84
10942--11057	11	10.7	11	80	14	111	79	0	19	0	0.79
10930--11081	50	3.0	50	83	10	191	77	0	21	1	0.84
13424--13467	17	2.5	17	77	3	52	45	4	6	43	1.51
16600--16656	29	2.0	29	89	0	87	38	15	10	35	1.82
18492--18604	31	3.7	31	81	7	149	53	8	9	27	1.63
18495--18609	61	1.9	61	94	0	203	53	9	8	27	1.62
20337--20446	31	3.6	31	88	2	168	53	9	9	28	1.63
21459--21559	31	3.3	31	91	2	168	52	8	11	26	1.67
22731--22787	28	2.0	29	96	3	107	31	17	3	47	1.65
23939--23984	21	2.2	21	100	0	92	15	30	32	21	1.94
31433--31591	36	4.4	36	85	6	180	35	23	18	22	1.95
31787--33198	54	26.7	53	80	8	1206	32	18	25	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31982--32147	55	3.0	55	91	0	269	30	16	24	28	1.96
31982--32177	55	3.6	55	87	4	249	30	16	22	30	1.96
31775--33198	104	13.5	105	80	7	1294	32	17	25	24	1.97
31787--33198	158	8.9	159	78	9	1241	32	18	25	24	1.97
33203--33575	55	6.8	55	84	6	391	32	14	23	29	1.94
33158--33530	111	3.4	110	82	5	420	31	15	24	28	1.95
33197--33575	166	2.3	163	83	4	431	31	14	24	29	1.94
33203--33572	111	3.4	111	82	4	380	32	14	23	29	1.94
34665--34710	21	2.2	21	100	0	92	15	30	32	21	1.94
37887--37918	15	2.1	15	94	0	55	37	9	0	53	1.34
55997--56058	21	3.0	20	79	13	72	20	19	14	45	1.85
57573--57670	23	4.3	23	83	7	112	28	20	22	28	1.98
66292--66401	37	3.0	37	85	2	159	40	20	15	22	1.90
66398--66659	48	5.5	48	88	3	377	28	20	15	35	1.93
66397--66659	95	2.8	96	90	2	388	28	20	15	35	1.93
66659--66780	65	1.9	65	89	0	190	28	23	17	30	1.97

Tables:   1

The End!