genome.fa.s2672.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002672.1 Hibiscus syriacus cultivar Beakdansim tig00005488_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55143

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5935--5977	20	2.0	22	86	8	63	41	0	6	51	1.29
6098--6204	29	3.7	28	75	12	83	48	0	1	49	1.12
6284--6367	27	3.1	27	72	17	75	48	3	1	46	1.27
6421--6474	27	2.1	25	86	6	72	44	0	1	53	1.11
9479--9510	2	16.5	2	93	6	57	50	0	0	50	1.00
10251--10313	29	2.2	29	80	13	76	46	15	9	28	1.78
10265--10320	29	1.9	29	92	0	94	46	17	12	23	1.82
10874--10907	2	17.0	2	100	0	68	50	0	0	50	1.00
16133--16176	18	2.4	18	88	0	61	45	0	4	50	1.22
16614--16999	183	2.1	183	89	3	591	46	7	2	43	1.46
21368--21453	23	3.7	24	84	4	104	25	15	20	38	1.92
22290--22975	112	6.1	112	93	1	1126	25	15	13	45	1.83
22290--22975	223	3.1	224	93	0	1151	25	15	13	45	1.83
22290--22975	335	2.0	336	93	1	1180	25	15	13	45	1.83
23697--23834	18	7.9	18	71	18	94	45	4	7	42	1.51
23989--24018	14	2.2	14	94	5	53	63	6	0	30	1.20
24030--24087	20	2.9	20	76	0	53	46	1	0	51	1.11
36798--37149	46	7.8	46	92	2	588	30	23	7	39	1.82
37247--37368	40	3.0	40	95	0	217	34	26	15	23	1.95
39476--39510	13	2.6	14	90	4	54	34	0	0	65	0.93
44927--44968	21	1.9	23	85	9	61	66	9	4	19	1.38
48245--48284	17	2.4	17	95	0	71	62	0	5	32	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49240--49279	3	13.3	3	83	0	53	57	0	0	42	0.98
49236--49274	18	2.1	19	90	4	62	53	0	0	46	1.00
49587--50106	44	12.0	44	84	3	619	29	20	22	27	1.98
49587--50106	86	6.0	88	91	2	637	29	20	22	27	1.98
49598--50082	128	3.7	130	87	2	636	29	20	22	27	1.98
49781--49843	21	3.0	21	68	25	60	31	19	22	26	1.97
50754--50828	22	3.5	22	89	7	127	36	14	14	34	1.87
51614--51848	118	2.0	118	90	1	373	27	22	16	34	1.95
52208--52232	12	2.1	12	100	0	50	28	32	8	32	1.86

Tables:   1

The End!