Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002673.1 Hibiscus syriacus cultivar Beakdansim tig00005490_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61400

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74--154
29
2.8
29
90
7
121
33
14
12
39
1.84
2502--2567
2
34.5
2
89
8
102
46
0
0
53
1.00
4443--4491
24
2.0
24
84
7
64
57
12
2
28
1.46
6800--6837
14
2.6
15
83
8
51
76
5
0
18
0.97
6812--6848
18
2.1
17
90
5
56
75
8
0
16
1.02
10046--10095
24
2.1
24
85
7
66
58
12
2
28
1.45
12426--12459
15
2.3
15
89
0
50
20
23
14
41
1.89
16125--16155
11
2.7
12
95
5
55
29
0
41
29
1.56
21805--21836
16
2.1
16
94
5
57
59
0
6
34
1.23
21880--21919
21
1.9
21
94
0
71
85
5
0
10
0.75
21880--21923
12
3.9
12
77
22
51
84
4
0
11
0.77
21880--22008
11
11.0
11
69
18
57
78
3
5
12
1.06
21911--21956
16
2.8
17
80
6
67
73
0
10
15
1.08
24280--24553
116
2.4
115
87
2
397
53
18
4
23
1.63
24432--24499
20
3.4
20
68
8
66
61
13
1
23
1.40
24294--24494
40
5.1
40
76
11
200
55
17
2
23
1.56
37202--37239
20
1.9
19
85
15
51
2
10
7
78
1.04
37207--37246
21
1.9
21
84
0
53
7
7
7
77
1.13
38424--38468
23
2.0
23
95
0
81
20
31
6
42
1.77
40265--40311
23
2.0
23
95
0
85
29
27
8
34
1.87
53614--53651
19
2.0
19
89
0
58
47
10
0
42
1.38
55048--55576
266
2.0
266
93
0
896
39
15
5
38
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55899--55955
2
29.0
2
96
3
107
50
0
0
49
1.00

Tables:   1

The End!