genome.fa.s2674.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002674.1 Hibiscus syriacus cultivar Beakdansim tig00005491_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94620

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33--96	27	2.4	27	80	12	69	56	3	1	39	1.25
900--1035	59	2.3	59	82	6	150	33	16	15	35	1.90
11778--11825	19	2.6	19	90	3	71	39	0	6	54	1.26
12851--12880	10	3.0	10	95	0	51	13	0	0	86	0.57
12872--12925	20	2.7	20	94	0	90	53	0	0	46	1.00
16220--16271	22	2.4	22	86	0	68	23	19	34	23	1.96
16197--16278	22	3.8	21	75	10	67	24	20	30	24	1.99
23385--23573	103	1.8	99	80	11	220	28	19	14	38	1.90
23981--24124	71	2.0	71	85	5	193	51	15	9	23	1.73
28671--28797	45	2.8	45	97	0	236	27	12	22	37	1.91
29142--29277	55	2.5	55	95	0	236	43	13	22	20	1.87
29809--29959	72	2.1	72	91	0	239	36	13	25	24	1.92
33210--33449	125	1.9	125	84	3	322	35	14	24	26	1.93
34651--34763	37	3.1	37	87	2	165	33	22	17	26	1.96
35151--35420	54	5.0	54	92	2	434	35	17	27	19	1.94
35156--35243	30	3.1	30	63	24	82	36	19	23	20	1.95
35151--35599	54	8.3	55	85	6	401	34	17	25	22	1.96
36260--36301	18	2.3	18	100	0	84	26	19	11	42	1.85
36893--36937	3	14.7	3	95	4	81	31	0	0	68	0.89
37802--37848	17	2.8	17	96	0	85	42	0	0	57	0.98
44700--44739	19	2.0	20	85	4	55	17	0	10	72	1.11
44696--44781	32	2.5	33	80	14	95	16	2	11	69	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44715--44763	24	2.1	22	85	7	62	14	2	12	71	1.23
49269--49330	2	31.5	2	96	3	117	50	0	0	50	1.00
56710--56848	29	4.5	30	77	15	131	52	0	5	41	1.25
56685--56824	64	2.2	62	81	15	164	52	0	7	40	1.29
56727--56850	66	1.9	66	86	6	182	50	0	5	44	1.25
56924--57005	36	2.2	37	85	14	116	70	2	1	25	1.06
58471--58518	23	2.1	23	88	0	69	35	12	18	33	1.89
58891--58944	23	2.5	20	75	18	54	42	18	1	37	1.61
58906--58968	23	2.7	23	90	0	90	38	19	6	36	1.77
58630--59473	430	2.0	427	98	1	1645	38	13	8	39	1.75
59321--59374	23	2.5	20	75	18	54	42	18	1	37	1.61
59336--59398	23	2.7	23	90	0	90	38	19	6	36	1.77
59479--61204	198	8.7	198	97	0	3237	34	14	14	36	1.87
61270--61349	38	2.1	38	83	2	99	55	10	2	32	1.47
61286--61349	19	3.4	19	95	0	110	56	9	3	31	1.47
63144--63209	33	2.0	33	87	0	96	24	45	1	28	1.62
65326--65378	24	2.2	24	83	6	63	26	7	13	52	1.66
65686--65735	20	2.5	20	81	12	75	22	16	10	52	1.73
65801--66250	229	2.0	228	94	1	785	39	7	8	45	1.61
71069--71145	31	2.5	31	80	2	91	16	25	28	28	1.97
71692--71732	22	2.0	21	85	9	57	29	9	7	53	1.60
76307--76334	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77277--77302	2	13.0	2	100	0	52	50	0	0	50	1.00
78883--78931	2	24.5	2	100	0	98	51	0	0	48	1.00
82213--82291	40	2.0	40	97	0	149	30	24	13	31	1.94
85354--85379	2	13.0	2	100	0	52	50	0	0	50	1.00
91426--91459	18	1.9	18	88	5	52	8	44	11	35	1.72
91791--91885	28	3.3	28	65	16	77	42	5	2	50	1.36

Tables:   1

The End!