genome.fa.s2675.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002675.1 Hibiscus syriacus cultivar Beakdansim tig00005510_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64728

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2962--3010	19	2.6	19	96	0	89	32	2	10	55	1.45
3567--4664	200	5.8	182	88	7	1359	35	14	17	31	1.91
3366--4664	379	3.4	382	91	4	1833	35	14	17	31	1.91
3166--4664	579	2.6	579	98	0	2854	35	14	17	31	1.91
6148--6253	6	17.7	6	82	0	86	37	7	33	21	1.82
6148--6254	36	3.0	36	88	0	151	37	7	32	22	1.82
6165--6254	6	15.0	6	83	0	90	36	6	33	23	1.81
6148--6253	12	8.8	12	84	0	122	37	7	33	21	1.82
7463--8224	183	4.2	183	96	0	1355	35	14	16	33	1.89
11017--11066	23	2.2	23	92	0	82	34	6	22	38	1.78
11432--11481	23	2.2	23	92	0	82	34	6	22	38	1.78
10755--12659	415	4.6	415	97	0	3584	42	7	10	39	1.68
11783--11827	22	2.0	22	83	8	56	42	11	8	37	1.72
11845--11894	23	2.2	23	88	0	73	34	4	22	40	1.72
12260--12309	23	2.2	23	92	0	82	34	6	22	38	1.78
10755--12659	828	2.3	829	97	0	3600	42	7	10	39	1.68
13367--13401	18	2.0	17	88	5	52	51	0	5	42	1.25
17986--18014	15	1.9	15	100	0	58	55	0	0	44	0.99
17989--18101	15	7.9	15	71	23	50	46	1	0	50	1.17
18004--18101	23	4.2	25	65	27	63	45	2	1	51	1.19
18027--18072	18	2.6	18	74	16	51	43	2	0	54	1.12
18003--18133	59	2.3	59	81	15	159	45	2	1	50	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18056--18136	33	2.5	31	79	14	85	45	2	2	49	1.28
20171--20209	19	2.2	16	86	13	51	74	0	2	23	0.94
23466--23560	31	3.0	31	74	17	88	57	3	13	25	1.51
23658--23707	18	2.8	18	82	14	59	44	6	4	46	1.47
23620--23750	17	8.3	15	66	21	56	47	3	3	45	1.39
23945--24000	17	3.2	17	92	5	85	48	0	26	25	1.52
23891--23972	27	3.0	27	92	3	128	46	0	26	26	1.53
23897--24011	44	2.6	44	80	13	153	46	0	26	26	1.53
24232--24369	2	72.0	2	72	18	98	47	1	3	47	1.28
24423--24501	7	11.3	7	79	0	68	49	30	0	20	1.49
24416--24497	28	3.0	28	80	3	96	51	28	0	20	1.48
24959--24983	13	1.9	13	100	0	50	56	4	0	40	1.18
24957--24991	15	2.5	15	90	9	56	54	5	0	40	1.24
25311--25337	13	2.1	13	100	0	54	44	0	0	55	0.99
25505--25558	16	3.4	16	86	0	81	40	12	22	24	1.89
34229--34287	25	2.4	25	94	0	100	50	16	18	13	1.77
35333--35492	76	2.1	76	97	1	304	35	6	6	52	1.52
35720--35806	32	2.7	32	92	0	138	27	12	21	37	1.90
45241--45314	30	2.5	30	84	0	94	31	9	14	44	1.77
45864--45909	21	2.1	22	88	4	67	34	0	2	63	1.07
46471--46553	3	27.3	3	97	2	157	67	0	0	32	0.91
47903--47954	21	2.5	21	81	3	61	38	19	25	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47940--48057	41	2.9	41	93	0	182	39	22	16	20	1.92
47943--48078	20	6.7	20	75	3	101	36	24	17	22	1.95
47963--48038	21	3.7	21	72	10	75	43	21	17	18	1.88
48256--48299	22	2.0	22	95	0	79	20	45	15	18	1.85
48558--48616	20	3.0	20	87	0	73	16	18	22	42	1.89
48746--48807	25	2.4	26	69	28	60	20	8	14	56	1.64
49931--49975	18	2.5	18	88	0	72	26	44	15	13	1.83
50454--50520	20	3.4	20	81	2	73	38	23	22	14	1.92
50497--50584	33	2.7	33	94	0	149	50	20	17	12	1.78
50493--50589	19	5.6	19	71	22	97	47	20	18	13	1.82
50601--50691	14	5.9	14	74	20	83	10	17	23	48	1.79
50596--50707	33	3.4	33	97	1	208	11	18	22	47	1.81
50692--50747	20	2.8	19	86	7	76	16	23	25	35	1.94
52832--52900	20	3.5	20	95	0	120	15	21	26	36	1.94
55324--55376	23	2.3	23	81	9	63	37	18	16	26	1.93
56085--56198	40	2.8	40	75	10	124	23	18	24	33	1.97
56106--56177	20	3.7	20	86	1	101	25	20	26	27	1.99
56167--56239	21	3.6	19	76	12	58	15	21	21	41	1.90
56270--56310	21	2.0	21	85	0	55	34	31	17	17	1.93
56710--56744	15	2.3	15	90	0	52	51	25	8	14	1.70
56965--57061	48	2.0	48	90	4	151	41	31	12	14	1.83
59406--59468	32	2.0	32	100	0	126	17	28	15	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60058--60089	13	2.5	13	100	0	64	18	18	25	37	1.94
60713--60787	39	1.9	38	84	12	100	33	13	0	53	1.40
61023--61068	23	2.0	23	91	8	76	39	6	0	54	1.26

Tables:   1

The End!