genome.fa.s2677.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002677.1 Hibiscus syriacus cultivar Beakdansim tig00005534_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108784

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4355--4384	10	3.0	10	95	0	51	56	0	3	40	1.16
4349--4386	13	2.9	14	84	7	53	60	0	2	36	1.11
8864--9119	21	12.6	21	74	14	209	43	0	8	48	1.33
8894--9120	83	2.7	84	85	4	280	44	0	8	46	1.33
8904--9102	62	3.2	64	90	5	318	44	0	8	47	1.33
20991--21056	29	2.3	29	97	0	123	25	12	22	39	1.89
21836--21862	5	5.4	5	100	0	54	22	18	40	18	1.91
23135--23232	42	2.4	40	86	9	137	46	0	2	51	1.12
29088--29158	32	2.2	32	82	12	83	28	8	28	35	1.86
31915--31954	18	2.2	18	86	0	53	17	42	17	22	1.89
34798--34846	3	16.3	3	91	0	80	30	2	2	65	1.15
38484--38546	33	2.0	33	93	6	112	15	14	9	60	1.59
40970--41049	26	3.3	25	70	19	80	25	25	10	40	1.86
41650--41758	22	4.7	22	72	17	96	71	11	13	3	1.26
41651--41773	12	10.4	12	73	13	78	73	10	13	3	1.22
41675--41719	21	2.2	22	88	11	69	68	8	20	2	1.27
42873--42982	4	28.0	4	85	3	152	49	21	0	28	1.56
43338--43436	36	2.8	36	96	0	180	35	16	11	37	1.84
43559--43792	101	2.3	98	81	10	251	30	19	12	37	1.89
43739--43857	36	3.4	36	79	7	113	31	21	12	35	1.90
43754--43857	36	3.0	36	81	4	124	32	20	11	35	1.88
44106--44370	29	9.2	28	73	13	182	28	10	14	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44080--44399	148	2.2	148	98	0	622	26	12	14	45	1.81
44366--44469	52	2.0	53	92	3	174	32	14	17	35	1.90
44457--44520	30	2.1	30	94	0	110	35	9	14	40	1.78
44449--44525	30	2.7	29	84	9	104	32	7	15	44	1.75
44674--44897	120	1.9	119	81	8	276	30	14	12	41	1.84
44795--44919	64	2.0	63	88	1	187	31	14	11	43	1.80
44901--44980	40	2.0	40	87	4	117	31	20	11	37	1.87
45076--45119	15	2.9	15	93	0	70	31	20	4	43	1.72
45405--45494	36	2.4	36	83	7	110	37	14	11	36	1.82
45405--45483	38	2.1	38	86	9	110	37	11	11	39	1.77
45353--45494	36	3.9	35	73	10	106	35	14	11	38	1.81
45499--45612	36	3.4	34	71	21	98	22	21	14	41	1.90
45739--45967	43	5.4	44	75	12	185	26	31	18	23	1.98
45742--46068	130	2.5	132	87	5	448	26	30	18	24	1.98
46267--46312	3	15.3	3	90	0	74	30	2	2	65	1.16
49142--49247	53	2.0	53	98	0	203	29	33	11	26	1.91
51616--51648	16	2.1	16	100	0	66	57	24	12	6	1.57
51717--51777	16	3.8	16	82	0	86	59	19	11	9	1.60
51715--51776	32	1.9	32	93	0	106	61	19	9	9	1.54
52678--52713	14	2.6	14	90	0	63	58	16	11	13	1.63
52882--52953	29	2.4	29	84	6	83	37	9	6	45	1.64
53354--53436	29	2.8	29	92	1	139	43	9	14	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58124--58206	29	2.8	29	92	1	139	43	9	14	32	1.78
59070--59290	111	2.0	111	93	0	379	33	23	32	10	1.89
61185--61270	35	2.5	34	75	7	93	32	2	3	61	1.25
61233--61277	22	2.0	24	86	8	67	33	0	6	60	1.23
61753--61800	23	2.1	23	92	0	78	39	8	12	39	1.73
68838--68909	21	3.4	21	86	1	99	31	37	15	15	1.88
71455--71521	31	2.2	31	83	5	82	53	14	10	20	1.70
79947--80042	18	5.3	18	79	0	120	13	15	23	46	1.82
79947--80042	36	2.7	36	91	0	156	13	15	23	46	1.82
82151--82247	39	2.4	42	79	10	119	24	26	9	39	1.86
95897--95921	2	12.5	2	100	0	50	52	0	0	48	1.00
103262--103288	13	2.1	13	100	0	54	37	14	25	22	1.93

Tables:   1

The End!