Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002678.1 Hibiscus syriacus cultivar Beakdansim tig00005539_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51955

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2075--2105
7
4.4
7
100
0
62
41
0
29
29
1.56
2569--2686
24
5.2
24
61
19
63
34
20
9
35
1.85
2569--2725
45
3.5
45
93
2
264
33
20
8
36
1.84
6219--6284
3
21.7
3
78
9
71
4
25
1
68
1.18
6206--6304
6
16.0
6
79
14
76
4
22
1
72
1.07
6272--6303
16
2.0
16
100
0
64
0
12
0
87
0.54
16958--16992
17
2.1
17
88
0
52
14
20
45
20
1.85
23466--23523
5
11.6
5
75
14
57
6
22
50
20
1.72
23459--23504
21
2.2
21
92
7
76
10
23
45
19
1.82
23471--23525
14
4.1
14
76
9
69
9
21
49
20
1.76
24658--24776
60
2.0
60
86
0
166
33
15
17
33
1.91
24985--25122
60
2.3
60
88
7
201
30
17
19
32
1.95
25842--25882
15
2.7
15
76
0
55
48
7
4
39
1.52
26555--26581
4
6.8
4
100
0
54
25
0
0
74
0.83
30077--30120
21
2.2
20
87
4
61
31
27
25
15
1.96
31131--31162
2
16.0
2
100
0
64
50
0
0
50
1.00
31805--31871
22
3.0
22
95
2
116
19
26
28
25
1.99
35004--35047
21
2.2
20
87
4
61
31
27
25
15
1.96
36056--36143
2
44.0
2
100
0
176
50
0
0
50
1.00
36786--36852
22
3.0
22
95
2
116
19
26
28
25
1.99
40315--40366
27
2.0
27
96
3
97
38
23
3
34
1.73
40558--40584
2
13.5
2
100
0
54
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40644--40712
32
2.2
32
89
0
102
30
4
13
52
1.59
40644--40698
18
3.3
18
68
19
55
30
5
10
52
1.59
41508--42197
69
9.9
69
81
6
669
28
27
15
28
1.96
41508--42197
138
5.0
138
80
8
745
28
27
15
28
1.96
43158--43192
3
11.7
3
100
0
70
31
0
0
68
0.90
43209--43241
6
5.7
6
85
7
50
33
3
0
63
1.10
43209--43244
12
3.1
12
92
4
56
30
5
0
63
1.17
46412--46486
33
2.3
33
93
2
125
61
12
1
25
1.38
48364--48591
68
3.4
68
87
2
314
32
15
24
27
1.95
48524--48922
81
4.9
81
86
2
489
35
12
21
31
1.90
48524--48894
162
2.3
161
89
2
555
35
12
20
31
1.90

Tables:   1

The End!