Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002679.1 Hibiscus syriacus cultivar Beakdansim tig00005542_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55576

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
327--375
2
25.5
2
91
8
84
48
0
0
51
1.00
4664--4688
12
2.1
12
100
0
50
8
24
8
60
1.52
4921--5125
65
3.2
65
80
7
170
30
16
22
30
1.96
4966--5128
65
2.5
65
82
8
190
30
15
22
31
1.95
5761--5798
15
2.4
17
83
16
55
60
23
0
15
1.35
7524--7570
19
2.5
19
89
0
76
34
12
19
34
1.89
7629--7664
18
2.0
18
88
0
54
33
2
52
11
1.51
7751--7847
44
2.2
43
82
10
117
30
18
19
30
1.96
11661--11700
21
1.9
21
89
0
62
30
7
7
55
1.56
13638--13762
64
1.9
65
80
7
148
29
17
22
30
1.97
13682--13845
65
2.5
64
77
8
172
31
15
22
31
1.95
15701--15789
18
4.9
18
92
0
151
26
32
21
19
1.97
17026--17057
2
16.0
2
100
0
64
50
0
0
50
1.00
23784--23844
31
2.0
31
100
0
122
27
6
6
59
1.48
23788--23854
31
2.2
31
91
0
107
26
10
5
56
1.56
25043--25072
13
2.3
13
100
0
60
16
46
23
13
1.82
26386--26480
43
2.3
41
80
14
113
51
3
20
25
1.62
27592--27682
24
3.8
24
85
2
121
25
17
19
37
1.94
27592--27682
47
1.9
48
88
2
139
25
17
19
37
1.94
29867--29922
13
4.3
13
95
0
103
16
46
21
16
1.84
32445--32535
24
3.8
24
85
2
121
25
17
19
37
1.94
32445--32535
47
1.9
48
88
2
139
25
17
19
37
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34528--34591
31
2.1
31
100
0
128
18
15
28
37
1.92
35789--35819
16
1.9
16
93
0
53
29
6
0
64
1.18
39447--39487
20
2.0
21
90
9
57
58
0
4
36
1.20
40933--41707
105
7.4
105
97
0
1469
23
18
24
32
1.97
42452--42544
48
1.9
48
82
4
116
16
22
13
47
1.82
50962--51003
20
2.0
21
95
4
77
23
11
40
23
1.88
54410--54443
7
4.7
7
88
3
50
52
0
0
47
1.00
54403--54443
2
22.5
2
81
18
54
53
0
0
46
1.00
54397--54445
9
5.4
9
85
7
64
55
0
0
44
0.99
54402--54445
17
2.4
19
88
11
74
54
0
0
45
0.99
55133--55170
20
1.9
20
100
0
76
60
0
0
39
0.97

Tables:   1

The End!