genome.fa.s268.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000268.1 Hibiscus syriacus cultivar Beakdansim tig00000491_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150161

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2201--2272	20	3.7	19	77	15	67	73	1	2	22	1.04
2512--2554	18	2.5	17	85	7	61	67	2	4	25	1.22
2943--3021	33	2.3	34	87	10	117	30	16	12	40	1.86
3563--4175	205	3.0	206	88	6	861	22	17	27	33	1.96
3564--4175	104	6.0	105	89	5	885	21	17	27	33	1.96
4810--4966	67	2.4	65	84	5	199	36	8	22	32	1.85
4942--5216	35	8.0	35	75	14	223	38	14	20	25	1.91
4881--5191	135	2.3	134	81	4	365	38	13	20	27	1.90
4978--5161	99	1.9	99	82	6	239	38	14	20	27	1.91
5076--5213	71	1.9	71	92	2	233	38	14	21	25	1.91
5081--5258	70	2.5	71	86	5	229	38	16	20	24	1.93
6735--6799	16	4.2	16	77	16	50	1	12	7	78	1.02
6735--6805	29	2.5	28	82	15	83	1	12	7	78	1.00
6751--6780	13	2.3	13	94	0	51	0	10	10	80	0.92
6743--6792	18	2.7	18	84	9	57	2	12	8	78	1.05
6762--6807	19	2.4	19	86	13	60	0	13	8	78	0.97
6762--6807	20	2.4	19	85	7	58	0	13	8	78	0.97
6775--6812	20	2.0	20	84	5	51	0	18	5	76	0.97
10982--11024	18	2.5	17	85	7	61	67	2	4	25	1.22
11427--11495	34	2.0	34	94	0	120	31	14	11	42	1.82
12481--12567	43	2.0	44	95	2	158	47	8	9	35	1.65
13225--13347	44	2.7	45	83	5	142	30	20	17	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18758--18838	24	3.5	24	70	20	75	22	24	23	29	1.99
22652--22762	36	3.1	35	75	12	118	41	7	4	46	1.51
22858--22894	17	2.2	17	90	0	56	43	2	5	48	1.40
30037--30116	23	3.7	22	82	8	85	23	32	25	18	1.97
30037--30098	23	2.7	23	90	2	90	22	32	24	20	1.98
34800--34883	24	3.3	24	66	15	69	46	3	5	44	1.45
34824--34907	29	3.1	29	63	16	79	47	3	8	40	1.51
34799--34907	53	2.1	53	100	0	218	45	3	8	42	1.51
35795--35919	21	6.0	21	84	0	133	24	33	21	20	1.97
37325--37378	18	2.9	18	78	8	56	48	0	3	48	1.19
44224--44272	21	2.4	21	86	3	64	59	2	0	38	1.09
45817--45847	14	2.3	14	94	5	55	51	0	0	48	1.00
54191--54227	11	3.4	11	88	0	56	62	10	8	18	1.52
55434--55727	38	8.3	36	82	10	290	45	4	6	43	1.50
55640--55727	32	2.8	30	81	11	88	42	5	5	46	1.51
55702--55762	28	2.1	29	85	8	81	47	1	6	44	1.39
55800--55834	11	3.3	10	88	11	52	8	2	2	85	0.79
62257--63663	165	8.6	165	97	1	2651	28	26	21	22	1.99
62257--63663	327	4.3	329	97	1	2631	28	26	21	22	1.99
64303--64630	37	9.4	36	78	13	287	46	4	6	43	1.48
64324--64610	108	2.7	106	82	8	336	46	4	4	44	1.45
76617--76660	21	2.1	21	83	8	54	36	11	18	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87738--88035	148	2.0	148	94	1	517	30	20	9	39	1.84
88098--88140	17	2.6	18	85	10	56	18	6	0	74	1.04
88209--88255	20	2.4	19	80	16	51	76	0	14	8	1.01
92774--92847	36	2.1	36	97	0	139	36	9	13	40	1.77
94023--94075	29	1.9	26	88	11	79	73	3	7	15	1.20
96286--96335	24	2.1	23	81	3	55	20	16	22	42	1.89
96344--96397	22	2.5	22	84	6	65	14	7	20	57	1.61
97221--97249	15	2.0	15	93	6	51	62	0	10	27	1.28
99334--99385	3	17.7	3	84	11	72	34	0	0	65	0.93
99320--99385	25	2.8	22	79	18	71	33	0	0	66	0.92
100941--101030	30	3.0	30	81	1	110	17	16	5	60	1.55
100943--101030	29	3.0	29	81	5	97	17	17	5	60	1.55
100977--101066	29	3.1	29	79	3	92	17	13	7	61	1.55
102076--102118	23	1.9	23	85	4	61	44	0	6	48	1.29
102542--102629	45	2.0	45	95	0	158	38	15	6	38	1.75
116530--116588	26	2.3	26	78	0	64	35	15	15	33	1.89
118021--118238	40	5.3	41	72	13	114	30	16	24	29	1.96
118115--118272	82	1.9	83	84	6	216	36	17	20	25	1.94
118150--118282	42	3.2	41	77	17	139	35	18	19	26	1.95
119779--120063	41	6.9	41	82	2	320	28	18	18	34	1.95
120034--120144	43	2.7	41	88	5	168	32	14	18	35	1.91
120130--120223	41	2.3	42	88	5	138	24	19	18	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121414--121448	16	2.2	16	94	0	61	17	8	17	57	1.64
123151--123196	20	2.5	18	89	10	67	43	23	32	0	1.54
123605--123773	43	3.9	43	77	6	137	30	26	15	27	1.96
123829--123935	53	2.0	53	92	7	182	28	16	30	23	1.96
124061--124099	16	2.2	19	86	13	57	38	0	2	58	1.12
124086--124140	10	5.6	10	77	12	51	21	0	0	78	0.76
124081--124141	20	3.1	20	79	13	72	22	0	0	77	0.78
124086--124142	28	2.0	28	83	6	71	22	0	0	77	0.77
124107--124142	17	2.1	18	94	5	65	16	0	0	83	0.65
124111--124142	11	3.0	11	95	4	57	15	0	0	84	0.63
136608--136656	17	2.7	17	87	9	62	42	2	0	55	1.11
136602--136660	18	3.2	18	83	13	68	40	1	0	57	1.09
136838--136876	13	2.9	14	81	11	55	30	0	5	64	1.15
136843--136890	12	3.8	12	80	20	53	31	0	2	66	1.03
136838--136890	26	2.0	26	89	7	81	32	0	3	64	1.12
136842--136899	14	4.4	13	76	10	55	36	0	1	62	1.06
139598--139639	15	2.6	16	82	17	52	61	0	4	33	1.17
140919--140984	2	33.5	2	93	3	116	48	0	1	50	1.10
141483--141526	4	11.0	4	100	0	88	25	0	0	75	0.81
142192--142266	3	25.0	3	78	5	80	36	0	2	61	1.10
143977--144012	19	1.9	19	88	5	56	41	5	0	52	1.24
144931--144990	18	3.4	16	84	11	57	33	0	1	65	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149987--150020	17	1.9	17	88	5	50	35	0	8	55	1.31

Tables:   1

The End!