genome.fa.s2680.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002680.1 Hibiscus syriacus cultivar Beakdansim tig00005543_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  157021

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16115--16174	13	4.8	13	82	12	81	16	53	15	15	1.74
16292--16326	12	2.9	12	95	0	61	28	51	11	8	1.67
19669--19797	67	1.9	67	98	0	249	45	4	13	35	1.65
20251--20352	47	2.2	46	94	3	177	14	17	29	38	1.90
26733--26802	31	2.3	30	82	7	86	42	17	7	32	1.76
26745--26804	31	1.9	31	89	0	93	41	16	6	35	1.75
36381--36441	22	2.7	22	82	10	61	45	0	1	52	1.10
36421--36459	17	2.3	17	86	0	51	58	0	0	41	0.98
36578--36624	22	2.1	23	88	4	69	53	0	2	44	1.12
36586--36629	23	2.0	22	82	8	54	54	0	2	43	1.12
37733--37821	27	3.2	27	70	12	81	48	1	3	47	1.26
37841--37866	2	13.0	2	100	0	52	50	0	0	50	1.00
39321--39371	3	18.0	3	76	11	54	27	3	1	66	1.20
39316--39371	29	2.0	28	92	3	94	26	5	3	64	1.32
42936--42999	32	2.0	32	96	3	121	15	14	9	60	1.57
44872--44926	24	2.5	21	85	8	65	74	10	10	3	1.19
44893--44939	12	3.9	12	86	8	60	72	12	10	4	1.25
44884--44939	23	2.3	25	75	12	62	71	12	12	3	1.27
46107--46152	4	11.5	4	95	0	74	50	28	0	21	1.49
46818--46922	36	3.0	36	80	5	117	32	20	11	36	1.88
47167--47268	29	3.7	29	87	7	142	28	9	14	47	1.76
47277--47382	52	2.0	53	94	3	187	32	12	16	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47352--47410	28	2.2	28	81	6	68	35	6	16	40	1.76
47366--47503	28	4.5	28	72	19	116	31	9	13	45	1.75
47414--47535	37	3.5	36	73	15	130	31	12	10	45	1.76
47381--47595	67	3.3	67	87	4	278	29	12	12	46	1.77
47654--47878	121	1.9	119	79	7	258	31	14	13	40	1.85
47776--47900	64	2.0	63	87	1	178	32	14	11	42	1.81
47882--47961	40	2.0	40	97	0	151	30	22	11	36	1.89
48509--48590	28	2.9	28	83	3	94	24	12	13	50	1.76
48694--48955	130	2.0	129	89	0	398	25	27	19	27	1.99
49148--49198	3	18.0	3	76	11	54	27	3	1	66	1.20
49143--49198	29	2.0	28	92	3	94	26	5	3	64	1.32
91050--91075	11	2.4	11	100	0	52	53	0	7	38	1.30
91657--91685	14	2.0	15	93	6	51	51	0	0	48	1.00
91789--91825	19	1.9	19	94	0	65	32	29	16	21	1.95
91896--92019	21	5.9	21	98	0	239	19	28	22	29	1.98
92715--92766	20	2.6	20	96	0	95	38	26	13	21	1.90
92822--93015	20	9.6	20	76	8	76	35	25	19	19	1.95
92818--93015	40	5.0	39	81	4	200	35	26	19	19	1.95
92822--93014	60	3.2	60	83	0	251	35	25	19	19	1.95
93396--93466	33	2.2	33	89	0	106	12	21	18	47	1.81
93587--93641	14	3.6	14	73	21	56	41	23	25	9	1.83
93587--93657	33	2.2	33	94	0	124	43	25	22	8	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93653--93750	19	5.7	19	70	22	81	10	24	22	42	1.84
93675--93764	14	5.7	14	74	23	81	8	25	23	42	1.83
93658--93772	33	3.5	33	95	0	212	9	24	20	45	1.81
95469--95935	185	2.5	186	99	0	918	21	12	19	46	1.83
95469--95935	93	5.0	93	99	0	918	21	12	19	46	1.83
95967--96095	19	7.3	19	73	17	116	45	27	17	9	1.78
96003--96095	33	2.8	32	88	4	141	46	26	18	8	1.78
95967--96095	52	2.5	52	73	14	131	45	27	17	9	1.78
96091--96225	19	7.6	19	75	16	128	11	19	23	45	1.82
96113--96169	14	3.7	14	77	20	60	10	21	22	45	1.82
96096--96188	33	2.8	33	95	0	168	10	20	21	47	1.80
98145--98180	14	2.6	14	95	0	63	33	0	22	44	1.53
98287--98388	19	5.6	19	84	13	151	44	17	23	14	1.86
98395--98718	33	9.5	33	78	14	181	13	20	18	46	1.83
98395--98690	52	5.6	52	91	3	255	14	21	17	46	1.83
98395--98632	85	2.8	85	89	6	351	14	21	18	46	1.83
101194--101240	24	2.0	24	87	8	69	38	21	14	25	1.92
101922--102290	20	18.5	20	86	4	458	20	18	26	34	1.96
102553--102604	16	3.1	17	78	13	63	36	0	3	59	1.16
103884--103926	22	2.0	22	86	9	61	65	6	6	20	1.41
105116--105162	18	2.6	18	83	12	60	53	0	2	44	1.12
109458--109483	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118344--118437	16	5.8	16	74	2	80	9	15	29	44	1.79
118408--118487	38	2.1	38	85	0	106	8	13	25	52	1.69
118344--118470	16	7.5	16	70	11	65	10	15	29	44	1.79
119709--119775	11	6.0	11	73	22	59	74	0	4	20	0.99
121140--121200	29	2.1	29	87	6	88	47	1	3	47	1.28
121106--121307	38	5.4	38	71	16	118	45	5	4	44	1.47
121202--121307	38	2.7	39	83	11	121	45	6	3	44	1.48
133388--133534	68	2.2	68	98	0	285	38	25	12	23	1.90
136594--136643	25	2.0	25	84	7	66	52	4	0	44	1.20
138942--138969	2	14.0	2	100	0	56	50	0	0	50	1.00
141144--141172	13	2.2	13	100	0	58	6	6	37	48	1.57
146814--146852	4	9.8	4	82	0	51	43	23	7	25	1.80
146817--146852	8	4.5	8	96	0	63	41	25	8	25	1.83
153797--154181	195	1.9	199	84	8	511	40	12	16	31	1.85

Tables:   1

The End!