genome.fa.s2681.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002681.1 Hibiscus syriacus cultivar Beakdansim tig00005544_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123604

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1369--1560	72	2.7	72	92	0	303	26	19	32	21	1.97
3782--3836	26	2.1	27	93	3	94	41	14	12	30	1.83
4963--5009	3	15.7	3	100	0	94	31	0	0	68	0.90
10454--10478	12	2.1	12	100	0	50	48	0	36	16	1.46
12027--12113	20	4.2	20	71	12	59	45	2	4	47	1.36
12058--12127	31	2.2	31	85	7	88	51	1	1	45	1.18
12058--12133	11	7.3	10	70	22	50	50	1	1	47	1.18
30297--30335	18	2.2	18	85	0	51	79	0	5	15	0.90
31586--31670	42	2.0	42	100	0	170	28	24	11	35	1.91
31629--31790	82	2.0	82	97	0	306	31	19	7	41	1.79
35145--35190	18	2.6	18	100	0	92	34	15	17	32	1.91
38882--38916	17	1.9	19	88	11	56	34	11	0	54	1.37
39928--39953	13	2.0	13	100	0	52	46	0	7	46	1.31
40063--40100	19	2.1	19	85	5	51	23	15	10	50	1.75
41019--41206	94	2.0	94	92	0	313	36	15	14	33	1.88
43849--43894	20	2.3	20	96	0	83	41	19	13	26	1.88
45166--45218	18	2.9	18	81	13	63	64	3	1	30	1.22
45164--45217	22	2.7	20	83	13	67	64	3	1	29	1.21
50958--51402	55	8.1	56	79	11	240	31	24	15	28	1.96
50991--51418	110	4.0	106	83	8	508	31	24	15	28	1.96
50991--51428	216	2.0	217	87	3	634	30	24	15	28	1.96
50991--51412	161	2.6	162	80	10	513	31	24	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51421--51527	36	2.9	36	87	2	151	21	22	18	37	1.94
51422--51530	37	3.0	36	89	1	146	22	22	19	36	1.95
52813--52934	16	7.5	15	72	19	77	6	19	0	73	1.04
52812--52947	18	7.6	18	74	15	72	6	19	0	74	1.03
52842--52914	29	2.4	30	82	11	87	5	23	0	71	1.07
52814--52917	7	13.1	7	70	24	57	5	21	0	73	1.04
62562--62704	45	3.1	45	88	6	198	38	20	12	27	1.89
76643--76853	77	2.8	77	88	2	291	24	31	23	20	1.98
77050--77091	18	2.4	17	84	11	50	61	16	14	7	1.53
82658--82697	21	1.9	21	89	0	62	25	40	25	10	1.86
84621--84671	9	6.2	8	76	19	52	13	0	27	58	1.36
84623--84666	17	2.6	17	85	7	63	13	0	29	56	1.38
85298--85422	54	2.3	55	88	1	180	23	32	22	21	1.98
85640--85681	18	2.4	17	84	11	50	61	16	14	7	1.53
91180--91204	2	12.5	2	100	0	50	48	0	0	52	1.00
92439--92538	33	3.0	33	94	0	173	29	11	20	40	1.86
92590--92636	17	2.8	17	81	18	62	72	0	0	27	0.85
92982--93507	169	3.1	169	86	3	681	24	19	25	31	1.98
92982--93507	84	6.3	84	84	4	661	24	19	25	31	1.98
93619--94029	110	3.8	110	88	3	609	24	19	22	33	1.97
96376--96448	18	3.9	18	75	7	83	21	19	30	28	1.98
101496--101577	33	2.5	34	88	6	107	29	14	17	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101511--101577	33	2.0	33	94	0	116	28	11	17	41	1.85
101633--101700	3	22.3	3	85	14	79	69	0	0	30	0.89
102230--102264	18	1.9	18	88	0	52	51	0	0	48	1.00
103027--103087	23	2.7	23	94	0	104	44	24	22	8	1.80
103954--104010	28	2.1	27	81	15	64	36	1	3	57	1.26
110863--110902	2	20.0	2	100	0	80	50	0	0	50	1.00
111029--111130	2	50.5	2	94	1	177	0	50	0	47	1.14
112003--112082	39	2.1	36	86	11	108	55	2	0	42	1.13
115447--115472	2	13.0	2	100	0	52	50	0	0	50	1.00
116227--116696	178	2.6	180	87	2	660	42	13	16	27	1.85
116617--116663	20	2.4	19	79	10	58	53	8	17	21	1.70
118774--118806	15	2.2	15	94	0	57	18	9	63	9	1.49
118886--118950	21	3.1	21	90	0	94	43	10	29	16	1.82
120821--120869	19	2.6	19	96	0	89	32	2	10	55	1.45
121094--122059	198	4.9	199	92	4	1499	35	14	17	32	1.90
121125--122059	393	2.4	391	91	4	1462	35	14	17	32	1.90
123526--123578	6	8.7	6	81	4	52	39	3	32	24	1.73
123526--123578	12	4.3	12	83	4	61	39	3	32	24	1.73

Tables:   1

The End!