Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002682.1 Hibiscus syriacus cultivar Beakdansim tig00005545_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63757

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11940--12370
42
10.2
42
79
6
399
23
21
20
35
1.96
11940--12370
83
5.1
84
78
5
372
23
21
20
35
1.96
12493--12544
21
2.5
21
90
3
88
42
26
17
13
1.86
13137--13199
29
2.2
29
85
2
92
34
6
15
42
1.73
16424--16535
29
3.8
29
89
1
170
34
3
19
41
1.69
16424--16535
58
1.9
59
92
1
190
34
3
19
41
1.69
16577--16605
11
2.6
11
100
0
58
37
24
17
20
1.93
17428--17512
31
2.7
31
80
5
91
16
30
28
24
1.96
17568--17621
26
2.1
26
85
0
72
25
7
16
50
1.71
18143--18207
18
3.6
18
76
12
69
55
1
1
41
1.18
20182--20224
14
3.0
14
82
3
50
53
0
0
46
1.00
20315--20354
19
2.0
20
85
9
55
60
2
7
30
1.38
21846--21905
3
21.0
3
77
16
56
68
1
0
30
0.99
21850--21906
11
4.7
12
74
18
55
70
1
0
28
0.98
22139--23231
113
9.6
113
95
0
1929
28
20
15
36
1.93
22139--23231
340
3.2
340
95
0
1940
28
20
15
36
1.93
22139--23231
453
2.4
453
95
0
1958
28
20
15
36
1.93
23667--23721
22
2.5
22
87
0
83
36
14
14
34
1.87
24785--24944
75
2.1
75
80
7
182
30
19
15
34
1.93
28321--28394
9
8.1
9
77
8
69
1
18
0
79
0.80
28321--28389
28
2.5
28
86
6
88
1
17
0
81
0.77
28321--28394
36
2.1
35
85
14
98
1
18
0
79
0.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28342--28394
8
6.0
8
77
18
52
0
22
0
77
0.77
28377--28431
26
2.0
28
89
6
87
3
16
10
69
1.32
31711--31764
14
3.8
14
85
2
63
51
9
14
24
1.71
31872--31898
14
1.9
14
100
0
54
55
0
14
29
1.40
33812--33902
48
1.9
48
82
12
118
49
3
2
45
1.30
33986--34027
20
2.2
19
86
4
57
64
2
0
33
1.07
33895--34131
120
2.0
120
82
6
288
46
8
7
37
1.62
34124--34163
19
2.0
20
85
9
55
60
2
7
30
1.38
35899--36018
20
5.9
20
84
5
152
13
24
21
40
1.89
35899--36018
60
2.0
61
88
6
181
13
24
21
40
1.89
35982--36045
22
3.0
22
68
13
71
18
20
23
37
1.94
35922--36045
40
3.0
41
84
12
132
15
22
22
39
1.91
36047--36104
6
10.3
6
98
1
88
0
17
53
29
1.44
36220--36317
41
2.4
41
94
0
169
38
23
18
19
1.93
36251--36316
21
3.2
21
69
4
71
34
25
18
21
1.96
36223--36293
20
3.5
20
69
3
70
39
22
21
16
1.92
36450--36488
20
2.0
20
90
5
62
71
5
0
23
1.05
40785--40825
21
2.0
21
85
9
57
39
7
0
53
1.29
41890--41952
23
2.8
21
79
13
63
26
25
19
28
1.98
43372--43418
7
6.7
7
80
9
51
14
0
27
57
1.38
43362--43402
14
2.9
14
85
3
55
17
0
29
53
1.44
43482--43527
14
3.3
14
84
0
56
17
0
34
47
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43469--43527
21
2.8
21
86
0
64
18
1
30
49
1.58
43491--43527
7
5.3
7
90
0
56
16
0
35
48
1.46
43574--43635
11
5.9
11
75
17
53
38
1
1
58
1.18
45263--45300
20
1.9
20
88
0
58
10
23
15
50
1.75
58357--58399
19
2.3
19
91
0
68
27
11
32
27
1.92
60942--60970
15
2.0
15
93
6
51
48
3
0
48
1.18
62654--62695
21
2.0
20
86
9
57
42
0
7
50
1.30

Tables:   1

The End!