genome.fa.s2684.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002684.1 Hibiscus syriacus cultivar Beakdansim tig00005548_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101477

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11455--11490	18	2.0	18	88	0	54	19	44	5	30	1.73
13480--13529	26	1.9	26	91	0	82	36	18	14	32	1.90
14682--14726	12	3.9	12	80	8	58	40	0	44	15	1.47
31568--31646	24	3.3	24	96	0	149	49	0	8	41	1.34
46411--46443	17	2.0	17	88	5	50	21	3	42	33	1.68
49574--49607	16	2.2	15	94	5	59	47	23	5	23	1.73
55216--55249	16	2.2	15	94	5	59	47	23	5	23	1.73
55609--55693	36	2.3	36	84	8	100	40	2	3	54	1.31
56827--56855	14	2.1	14	100	0	58	34	13	20	31	1.92
56894--56918	13	1.9	13	100	0	50	16	4	16	64	1.44
57680--57797	56	2.1	56	96	0	218	48	11	14	26	1.77
57692--57807	56	2.1	56	98	0	223	46	11	15	26	1.79
58225--58298	31	2.4	31	88	0	103	36	1	13	48	1.51
64740--64793	3	17.7	3	92	3	90	64	0	0	35	0.94
64958--65671	76	9.4	76	95	0	1257	34	21	19	23	1.96
66341--66423	22	3.8	22	95	0	148	39	14	10	34	1.81
70830--70897	25	2.7	26	86	6	88	0	20	0	79	0.73
73406--73454	23	2.2	22	85	7	64	53	6	14	26	1.64
75860--75884	7	3.6	7	100	0	50	76	0	0	24	0.80
78119--78160	3	14.0	3	100	0	84	66	0	0	33	0.92
79615--79753	60	2.3	60	85	4	183	35	12	13	37	1.84
88624--88690	29	2.3	29	80	16	77	49	5	4	40	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90298--90660	21	16.6	21	66	18	145	22	51	5	21	1.67
90319--90462	48	3.1	46	76	13	134	22	51	5	20	1.68
90298--90587	45	6.6	44	70	20	123	22	50	5	22	1.69
90413--90480	18	3.5	20	81	11	72	23	50	5	20	1.70
90391--90657	66	4.1	66	79	8	312	21	51	5	21	1.67
90298--90812	21	23.2	21	64	24	120	21	52	5	20	1.67
90578--90687	27	4.2	27	72	20	90	19	57	4	19	1.58
90568--90738	48	3.6	47	88	3	227	19	54	5	19	1.62
90568--90745	96	1.9	96	85	2	250	19	54	5	20	1.63
90762--90818	21	2.7	21	86	0	69	21	59	3	15	1.51
91132--91199	31	2.2	31	86	0	91	36	22	2	38	1.69
98867--98936	33	2.1	33	84	12	90	62	14	2	20	1.43
98974--99016	13	3.3	13	80	0	50	67	13	2	16	1.33
99136--99167	15	2.1	15	94	0	55	3	34	28	34	1.73

Tables:   1

The End!