genome.fa.s2686.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002686.1 Hibiscus syriacus cultivar Beakdansim tig00005550_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  141164

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1841--1879	20	2.0	20	100	0	78	23	30	20	25	1.98
3635--3855	43	5.3	41	80	6	159	33	18	18	29	1.95
3703--3855	82	1.8	84	86	8	224	33	16	18	30	1.94
3840--3941	40	2.5	40	84	3	125	35	17	13	33	1.89
13195--13255	2	30.5	2	100	0	122	50	0	0	49	1.00
19542--19667	47	2.8	45	84	5	155	29	21	7	41	1.81
26874--27000	47	2.8	45	85	5	166	29	22	7	40	1.82
31179--31322	21	6.8	20	72	12	92	35	23	16	24	1.95
35960--36145	98	1.9	99	95	1	338	38	1	18	41	1.61
38837--38930	38	2.5	38	79	10	111	28	27	18	25	1.98
38838--38930	18	4.9	18	72	14	71	29	27	18	24	1.98
38894--38931	20	1.9	20	94	0	67	26	28	21	23	1.99
38900--38939	20	2.0	20	85	0	53	32	30	17	20	1.95
39327--39360	12	2.9	12	95	4	61	35	17	5	41	1.74
45029--45059	13	2.4	13	100	0	62	22	0	9	67	1.19
46244--46352	24	4.5	24	77	2	112	49	16	15	18	1.80
46246--46334	12	7.4	12	70	5	72	51	16	14	16	1.76
46244--46352	48	2.3	48	83	3	130	49	16	15	18	1.80
48657--48700	13	3.3	13	87	3	61	18	18	47	15	1.83
50478--50517	21	2.0	21	85	5	55	17	30	5	47	1.69
53770--53819	2	25.0	2	100	0	100	50	0	0	50	1.00
56559--56608	24	2.1	24	88	7	75	26	2	14	58	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61924--62533	307	2.0	302	96	3	1125	30	16	24	28	1.96
64427--64465	20	2.0	20	84	0	51	23	7	23	46	1.78
64636--64673	20	1.9	20	84	10	51	18	26	34	21	1.96
73616--73714	36	2.8	36	95	0	171	25	16	17	41	1.89
78558--78699	21	6.7	21	68	14	67	36	21	16	24	1.94
81219--81263	20	2.2	21	84	11	58	44	13	11	31	1.78
92565--92821	4	64.2	4	96	1	471	49	25	0	24	1.53
95468--96223	189	4.0	189	91	0	1145	40	18	14	26	1.89
97814--97838	12	2.1	12	100	0	50	68	0	0	32	0.90
98716--98777	28	2.2	29	91	2	99	45	14	9	30	1.77
99605--99701	31	3.2	29	72	12	77	48	9	2	40	1.47
110727--110759	17	1.9	17	93	0	57	57	0	3	39	1.14
110771--111007	130	1.9	130	80	7	288	44	8	8	39	1.63
112429--112483	3	19.0	3	78	14	62	60	0	0	40	0.97
112640--113504	76	11.4	76	95	0	1525	35	22	19	23	1.96
114178--114276	22	4.5	22	92	0	171	40	14	12	33	1.82
114178--114278	44	2.3	44	98	0	193	40	13	12	32	1.83
118970--119060	16	5.6	16	79	6	76	4	17	0	78	0.92
118956--119066	25	4.4	25	71	19	77	3	18	0	77	0.91
118975--119066	17	6.2	14	73	20	57	4	18	0	77	0.94
118956--119066	42	2.7	42	88	6	138	3	18	0	77	0.91
118982--119066	9	10.4	8	79	17	70	4	17	0	77	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119050--119104	27	2.0	27	92	0	92	7	10	10	70	1.32
118971--119093	42	2.9	41	85	10	142	5	15	2	76	1.08
122272--122310	20	2.0	20	84	0	51	53	7	12	25	1.65
124451--124695	130	1.9	128	80	8	286	45	7	7	38	1.62
124737--124797	29	2.0	30	81	15	72	63	6	4	24	1.38
126086--126164	3	27.0	3	82	10	101	60	0	0	39	0.97
126075--126162	12	7.8	12	76	17	82	57	0	0	42	0.98
130102--130165	23	2.9	22	77	9	67	62	3	0	34	1.11
130741--130792	22	2.5	21	82	14	63	25	0	3	71	1.03
140163--140206	23	1.9	23	86	9	63	59	20	9	11	1.59
140465--140493	14	2.1	14	100	0	58	55	17	13	13	1.70
140464--140515	10	4.5	11	76	23	54	53	17	11	17	1.72

Tables:   1

The End!