genome.fa.s2688.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002688.1 Hibiscus syriacus cultivar Beakdansim tig00005552_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  158771

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12562--12612	23	2.2	23	86	6	68	56	9	17	15	1.65
32253--32309	29	2.0	29	85	0	78	42	14	3	40	1.62
39700--39751	24	2.2	24	89	0	77	44	25	1	28	1.65
39709--39760	24	2.2	24	82	0	59	50	19	1	28	1.58
41891--42006	60	1.9	60	84	3	153	32	14	18	34	1.91
62019--62083	6	10.7	6	83	8	51	73	3	1	21	1.05
78557--78654	50	2.0	50	89	0	151	54	25	9	11	1.65
80724--80767	22	2.0	22	95	0	79	34	22	15	27	1.95
93837--93893	29	1.9	30	82	3	71	19	17	8	54	1.68
98887--99020	40	3.3	40	92	0	223	30	14	13	41	1.85
99011--99110	36	2.8	36	85	0	137	23	24	15	38	1.92
99023--99118	36	2.7	36	86	0	138	26	22	16	34	1.95
99052--99167	51	2.2	51	81	7	117	25	21	17	36	1.95
99104--99200	39	2.5	39	89	0	149	27	18	15	38	1.91
99214--99431	43	4.8	43	79	13	249	27	13	28	30	1.94
99245--99352	55	2.0	55	94	3	191	30	12	27	29	1.92
99439--99761	90	3.6	90	90	2	472	26	18	20	34	1.96
104011--104076	25	2.6	25	92	2	105	65	9	12	13	1.48
106637--106671	18	1.9	18	88	0	52	28	17	0	54	1.43
107968--108026	8	7.6	8	71	21	54	18	23	42	15	1.88
107961--108007	15	3.3	15	88	5	62	21	23	38	17	1.93
107989--108064	18	4.6	18	76	17	92	13	21	48	17	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107983--108058	31	2.5	31	93	0	134	15	21	47	15	1.82
107968--108012	13	3.3	13	90	6	63	17	24	42	15	1.88
111840--111874	18	1.9	18	88	0	52	28	17	0	54	1.43
113162--113195	15	2.3	15	94	0	59	23	23	35	17	1.95
113184--113252	18	4.2	18	73	19	78	14	20	47	17	1.82
113169--113244	31	2.4	33	93	4	129	18	22	43	15	1.88
113195--113231	13	2.8	13	83	0	56	16	21	45	16	1.84
115085--115133	3	16.0	3	95	4	89	67	0	0	32	0.91
115213--115265	22	2.4	22	100	0	106	45	9	0	45	1.36
115245--115541	39	7.7	38	76	12	259	45	5	4	45	1.44
116209--116951	84	8.9	84	79	3	754	25	20	23	30	1.99
116131--116951	333	2.5	331	87	3	1155	25	20	23	30	1.99
116131--116980	164	5.1	164	85	3	1069	24	20	24	30	1.99
120319--120363	19	2.4	19	92	3	74	66	8	13	11	1.44
122113--122178	25	2.6	25	92	2	105	65	9	12	13	1.48
123406--123448	3	14.0	3	95	4	77	67	0	0	32	0.91
123571--123857	41	7.2	40	79	9	311	45	5	3	44	1.44
123538--123857	80	4.1	78	88	7	397	45	5	3	45	1.45
131534--131578	19	2.1	22	84	15	60	66	4	11	17	1.38
132635--132689	27	2.0	27	86	6	76	47	5	10	36	1.62
137134--137177	2	22.0	2	100	0	88	50	0	0	50	1.00
138125--138192	30	2.3	30	87	5	93	44	17	16	22	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138176--138245	30	2.5	27	79	9	79	41	11	15	31	1.83
141520--141647	51	2.5	51	83	5	177	17	32	28	21	1.96
145311--145381	26	2.9	24	69	28	60	63	4	8	23	1.40
147577--147617	18	2.3	18	91	4	66	63	2	4	29	1.28
149191--149229	19	2.1	19	95	0	69	33	28	15	23	1.95
149253--149324	20	3.6	20	74	7	74	27	25	20	26	1.99
149901--150006	20	5.7	20	73	13	91	14	17	21	46	1.84
149973--150016	20	2.2	20	91	0	70	11	13	20	54	1.69
151919--151987	20	3.5	20	79	0	84	36	23	20	20	1.95
152008--152041	14	2.4	14	85	0	50	52	14	14	17	1.74
152083--152151	20	3.5	20	84	7	95	18	21	24	34	1.96
152065--152152	40	2.4	37	80	14	101	17	22	23	36	1.94
152138--152180	19	2.2	20	91	4	70	13	13	23	48	1.79
152680--152773	42	2.2	42	86	3	127	22	37	19	21	1.95
152704--152773	21	3.3	20	72	5	59	22	35	20	21	1.96
154067--154307	62	3.6	63	83	10	227	29	2	16	51	1.56
154152--154197	14	3.4	14	74	17	51	32	0	17	50	1.47
154147--154307	62	2.5	63	92	7	254	28	1	16	53	1.51
154173--154284	35	3.4	34	70	20	112	26	1	15	56	1.49
154359--154416	20	2.9	20	89	0	80	43	25	17	13	1.86
154385--154616	93	2.5	94	80	2	263	26	17	23	32	1.97
154496--154596	53	1.9	53	91	4	168	22	17	26	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154475--154658	73	2.5	74	88	0	271	25	16	23	34	1.95
154455--154658	20	10.9	20	75	13	182	25	16	23	34	1.95
157107--157152	23	2.0	24	91	4	76	34	17	19	28	1.94
157955--158002	19	2.5	19	86	3	69	25	22	29	22	1.99

Tables:   1

The End!