genome.fa.s2689.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002689.1 Hibiscus syriacus cultivar Beakdansim tig00005554_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76836

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4693--4751	20	2.9	20	73	12	57	23	8	3	64	1.37
4852--4901	19	2.7	19	81	9	50	24	6	0	70	1.10
12567--12626	29	2.1	28	87	3	84	48	11	10	30	1.72
14512--14537	12	2.2	12	100	0	52	34	0	0	65	0.93
16536--16560	13	1.9	13	100	0	50	72	0	0	28	0.86
16555--16613	24	2.5	24	97	0	109	44	20	0	35	1.52
18073--18126	18	2.9	19	76	15	60	40	1	0	57	1.09
18155--18193	16	2.4	16	86	0	51	5	17	33	43	1.72
18186--18227	21	2.0	21	85	0	57	14	14	21	50	1.78
28451--28625	73	2.4	73	77	4	165	32	9	8	50	1.63
29121--29273	78	2.0	78	81	3	184	37	14	11	37	1.82
36113--36195	26	3.2	26	64	16	71	33	4	15	45	1.67
36108--36215	53	2.0	53	100	0	216	31	5	12	50	1.64
43864--43902	17	2.3	17	95	0	69	28	25	20	25	1.99
46908--46973	12	5.5	12	76	7	53	54	18	12	15	1.71
46908--46987	24	3.4	24	82	1	81	53	18	12	15	1.72
47167--47194	13	2.2	13	100	0	56	32	7	21	39	1.80
57565--57605	2	20.5	2	100	0	82	48	0	0	51	1.00
57615--57659	22	2.1	22	88	12	67	46	0	0	53	1.00
58784--59140	43	8.4	43	72	13	177	47	7	19	25	1.74
58766--59045	43	6.6	42	74	14	193	47	7	18	26	1.75
58923--58985	21	3.0	21	75	11	65	46	6	25	22	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58768--59091	129	2.6	125	78	10	318	47	7	19	25	1.74
61447--61492	23	2.0	23	91	0	74	17	21	30	30	1.96
64140--64309	29	5.9	29	90	1	245	15	35	27	21	1.94
64313--64370	28	2.1	28	93	0	98	1	27	25	44	1.64
64892--64984	29	2.9	31	73	18	84	44	0	8	47	1.34
64944--64998	18	3.4	18	65	31	52	38	0	9	52	1.33
65253--65300	22	2.2	22	92	0	78	45	4	14	35	1.64
66587--66631	23	2.0	23	86	0	63	40	2	2	55	1.24
66581--66631	23	2.5	20	77	20	52	39	1	1	56	1.22
67520--67633	60	1.9	60	96	0	210	46	10	0	42	1.44
67604--67640	11	3.1	12	88	11	58	40	10	0	48	1.38
67554--67633	21	4.0	21	66	21	53	46	11	0	42	1.39
67786--67910	60	2.1	60	94	2	218	46	11	0	42	1.39
67786--67939	60	2.6	59	87	10	201	47	9	0	42	1.36
67845--68153	45	6.6	48	74	16	256	45	9	0	44	1.42
67694--68082	153	2.5	155	92	3	640	46	10	0	42	1.38
68023--68153	38	3.3	40	82	7	106	43	5	2	48	1.38
68069--68143	3	25.7	3	75	5	55	41	1	4	53	1.28
67939--68064	60	2.1	60	95	1	227	46	12	0	41	1.42
68023--68334	26	12.5	25	71	18	124	43	8	1	46	1.44
67810--68264	153	3.0	152	82	11	478	45	8	1	45	1.42
68063--68358	121	2.5	124	86	10	427	43	7	2	46	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68535--68569	17	2.0	18	94	5	63	37	5	0	57	1.23
72791--72863	21	3.3	21	68	20	67	30	26	24	19	1.98
72921--72954	17	2.0	17	100	0	68	29	0	47	23	1.52
73053--73122	35	2.0	35	97	2	133	17	37	25	20	1.94
73057--73183	29	4.2	29	70	18	91	18	36	24	21	1.95
73177--73256	29	2.8	29	96	0	133	10	23	36	30	1.88
74828--74877	17	2.9	17	82	5	55	76	4	4	16	1.10

Tables:   1

The End!