Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002690.1 Hibiscus syriacus cultivar Beakdansim tig00005555_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 169424
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
File 1 of 2
Found at i:3824 original size:229 final size:229
Alignment explanation
Indices: 3424--4141 Score: 1316
Period size: 228 Copynumber: 3.1 Consensus size: 229
3414 GTTATATTGT
* * * *
3424 AAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTATTTCACTGT-GAAAATATATATATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
*
3488 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATCAAAAAATCAAA
66 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATAAAAAAATCAAA
* *
3553 TAATTATGTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
131 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
3618 AAAAAATTGAAACATAAATTACATAACTTTAAAA
196 AAAAAATTGAAACATAAATTACATAACTTTAAAA
3652 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
3717 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATAAAAAAATCAAA
66 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATAAAAAAATCAAA
*
3782 GAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
131 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
3847 AAAAAA-TGAAACATAAATTACATAACTTTAAAA
196 AAAAAATTGAAACATAAATTACATAACTTTAAAA
3880 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
1 AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
* * *
3945 ATATTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATTAAATAATCAAA
66 ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATAAAAAAATCAAA
4010 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-A
131 TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
4074 AAAAAATTGAAACATAAATTACATAACTTTAAAA
196 AAAAAATTGAAACATAAATTACATAACTTTAAAA
4108 AAAGTATATATCATTTTTATAAAAGTGTCCATAC
1 AAAGTATATATCATTTTTATAAAAGTGTCCATAC
4142 GTATAAAAGT
Statistics
Matches: 476, Mismatches: 12, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
227 7 0.01
228 321 0.67
229 148 0.31
ACGTcount: A:0.45, C:0.07, G:0.08, T:0.39
Consensus pattern (229 bp):
AAAGTATATATCATTTTTATAAAAGTGTCCATACTTATTTCACTGTGGAAAACATATTTATTATT
ATCTTTGGTTAATATTGTTAAATTTAAATTCTAAATAATATTTTATAAAATATAAAAAAATCAAA
TAATTTTTTGTGTAAATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAA
AAAAAATTGAAACATAAATTACATAACTTTAAAA
Found at i:4213 original size:20 final size:19
Alignment explanation
Indices: 4190--4236 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 19
4180 CGATATACCA
4190 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
4210 GGTAACAAAATGATAAAACC
1 GGTAA-AAAATGATAAAACC
4230 GGTAAAA
1 GGTAAAA
4237 CGTTACCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.55, C:0.11, G:0.17, T:0.17
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:4394 original size:20 final size:19
Alignment explanation
Indices: 4371--4417 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
4361 CGATATAACA
4371 GGTAAAAATATGATAAAACC
1 GGTAAAAA-ATGATAAAACC
*
4391 GGTATCAAAATGATAAAACC
1 GGTA-AAAAATGATAAAACC
4411 GGTAAAA
1 GGTAAAA
4418 TGATACCGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 19 0.79
21 3 0.12
ACGTcount: A:0.53, C:0.11, G:0.17, T:0.19
Consensus pattern (19 bp):
GGTAAAAAATGATAAAACC
Found at i:4419 original size:17 final size:19
Alignment explanation
Indices: 4380--4422 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
4370 AGGTAAAAAT
4380 ATGATAAAACCGGTATCAAA
1 ATGATAAAACCGG-ATCAAA
4400 ATGATAAAACCGG-T-AAA
1 ATGATAAAACCGGATCAAA
4417 ATGATA
1 ATGATA
4423 CCGGATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 1 0.04
20 13 0.57
ACGTcount: A:0.51, C:0.12, G:0.16, T:0.21
Consensus pattern (19 bp):
ATGATAAAACCGGATCAAA
Found at i:6648 original size:21 final size:21
Alignment explanation
Indices: 6624--6667 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
6614 AAGACAATCA
6624 AGAGTCGAAGAGAAACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
* *
6645 AGAGTCGAAGATACACTTGAG
1 AGAGTCGAAGAGAAACTTGAG
6666 AG
1 AG
6668 GCATAAGGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.11, G:0.32, T:0.16
Consensus pattern (21 bp):
AGAGTCGAAGAGAAACTTGAG
Found at i:6744 original size:33 final size:33
Alignment explanation
Indices: 6701--6766 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
6691 AAATAGATGG
*
6701 AGTGGCGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGCGAAAGAAGTAGAGGTGTTAAGGGGTGA
* * *
6734 AGTGGTGAAAGAAGTTGGGGTGTTAAGGGGTGA
1 AGTGGCGAAAGAAGTAGAGGTGTTAAGGGGTGA
6767 TATTAAGATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.29, C:0.02, G:0.48, T:0.21
Consensus pattern (33 bp):
AGTGGCGAAAGAAGTAGAGGTGTTAAGGGGTGA
Found at i:8580 original size:19 final size:19
Alignment explanation
Indices: 8556--8604 Score: 80
Period size: 19 Copynumber: 2.6 Consensus size: 19
8546 AATGTAGGGT
8556 TAATTTTGTATAAGATTTA
1 TAATTTTGTATAAGATTTA
*
8575 TAATTTTGTATACGATTTA
1 TAATTTTGTATAAGATTTA
*
8594 TATTTTTGTAT
1 TAATTTTGTAT
8605 GTGAATATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.31, C:0.02, G:0.10, T:0.57
Consensus pattern (19 bp):
TAATTTTGTATAAGATTTA
Found at i:9174 original size:198 final size:198
Alignment explanation
Indices: 8723--10676 Score: 3639
Period size: 198 Copynumber: 9.9 Consensus size: 198
8713 CAATATGGCC
* * * * *
8723 AACAGGGTGCAACCATAAAGTGTCAATCCATATATAAAAAGTGTCAATCCCAAAAACATCGAAAA
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG-AAC
*
8788 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTTTACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
* * *
8853 GAATATGTATAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAA
130 GAATATGTCTAAATAATGTGTCGACACT-TTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAA
8918 TGGAA
194 TGGAA
* *
8923 AACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
*
8988 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTTTACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
9053 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
9118 GAA
196 GAA
9121 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAA-C
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
9185 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
*
9250 AATATGTCTAAATAATGTGTCGACACTTTGTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
9315 GAA
196 GAA
9318 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
9383 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
9448 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
9513 GAA
196 GAA
*
9516 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTATCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
* *
9581 CAAATGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAACTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
*
9646 AATATGTCTAAATAATGTGTCGACACCTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
9711 GAA
196 GAA
9714 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
9779 C-AAAGTATAATGTAATATGTAA-TTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
*
9842 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCATAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
9907 GAA
196 GAA
*
9910 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCTAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
9975 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
*
10040 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTGGTGTCGATATTTTTGGTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
10105 GAA
196 GAA
10108 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
10173 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
*
10238 AATATGTCTAAATAATATGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
10303 GAA
196 GAA
* *
10306 AACAGGGTGCACCCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
10371 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGG-TTT-TGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
*
10434 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTGGTGTCGATATTTTTGGTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
10499 GAA
196 GAA
10502 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
10567 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
10632 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATA
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATA
10677 CTAATTTAAT
Statistics
Matches: 1716, Mismatches: 33, Indels: 12
0.97 0.02 0.01
Matches are distributed among these distances:
196 360 0.21
197 242 0.14
198 961 0.56
199 94 0.05
200 59 0.03
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (198 bp):
AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
GAA
Found at i:9996 original size:394 final size:396
Alignment explanation
Indices: 8723--10676 Score: 3616
Period size: 394 Copynumber: 4.9 Consensus size: 396
8713 CAATATGGCC
* * * * *
8723 AACAGGGTGCAACCATAAAGTGTCAATCCATATATAAAAAGTGTCAATCCCAAAAACATCGAAAA
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG-AAC
*
8788 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTTTACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
* *
8853 GAATATGTATAAATAATGTGTCGACA-CTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGA
130 GAATATGTCTAAATAATGTGTCGACACCT--TTTAGTTTGTGTCGATATTTTTGGTCCAGAATGA
* *
8917 ATGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACAT
193 ATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCAT
*
8982 CGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTTTACCGGTTTTA
258 CGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTA
9047 TGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAA
323 TGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAA
9112 TGAATGGAA
388 TGAATGGAA
9121 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAA-C
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
9185 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
9250 AATATGTCTAAATAATGTGTCGACA-CTTTGTAGTTTGTGTCGATATTTTTGGTCCAGAATGAAT
131 AATATGTCTAAATAATGTGTCGACACCTTT-TAGTTTGTGTCGATATTTTTGGTCCAGAATGAAT
9314 GGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
195 GGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG
9379 AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATG
260 AACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATG
9444 AGAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATG
325 AGAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATG
9509 AATGGAA
390 AATGGAA
*
9516 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTATCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
* *
9581 CAAATGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAACTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
9646 AATATGTCTAAATAATGTGTCGACACCTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACCTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
9711 GAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
196 GAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
9776 ACCC-AAAGTATAATGTAATATGTAA-TTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGA
261 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGA
*
9839 GAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCATAATGA
326 GAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGA
9904 ATGGAA
391 ATGGAA
*
9910 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCTAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
9975 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
* *
10040 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTGGTGTCGATATTTTTGGTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACCTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
10105 GAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
196 GAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
10170 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGA
261 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGA
*
10235 GAGAATATGTCTAAATAATATGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGA
326 GAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGA
10300 ATGGAA
391 ATGGAA
* *
10306 AACAGGGTGCACCCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
10371 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGG-TTT-TGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
* *
10434 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTGGTGTCGATATTTTTGGTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACCTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
10499 GAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
196 GAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
10564 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGA
261 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGA
10629 GAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATA
326 GAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATA
10677 CTAATTTAAT
Statistics
Matches: 1525, Mismatches: 26, Indels: 14
0.97 0.02 0.01
Matches are distributed among these distances:
394 616 0.40
395 339 0.22
396 507 0.33
397 6 0.00
398 57 0.04
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (396 bp):
AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACCTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
GAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGA
GAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGA
ATGGAA
Found at i:10100 original size:592 final size:593
Alignment explanation
Indices: 8723--10676 Score: 3635
Period size: 592 Copynumber: 3.3 Consensus size: 593
8713 CAATATGGCC
* * * * *
8723 AACAGGGTGCAACCATAAAGTGTCAATCCATATATAAAAAGTGTCAATCCCAAAAACATCGAAAA
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCG-AAC
*
8788 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTTTACCGGTTTTATGAGA
65 CCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGA
* * *
8853 GAATATGTATAAATAATGTGTCGACACTAATTTAGTTTGTGTCGATATTTTTGTTCCAGAATGAA
130 GAATATGTCTAAATAATGTGTCGACACT-TTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAA
* *
8918 TGGAAAACAGGGTGCAACCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAAACATC
194 TGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATC
*
8983 GAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTTTACCGGTTTTAT
259 GAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTAT
9048 GAGAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAAT
324 GAGAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAAT
9113 GAATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATC
389 GAATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATC
*
9178 ATCGAACCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
454 ATCGAACCCAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTT
*
9243 ATGAGAGAATATGTCTAAATAATGTGTCGACACTTTGTAGTTTGTGTCGATATTTTTGGTCCAGA
519 ATGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGA
9308 ATGAATGGAA
584 ATGAATGGAA
9318 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
9383 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
9448 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
*
9513 GAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTATCGATCCCAAAATCATCGA
196 GAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
* *
9578 ACCCAAATGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAACTATACCGGTTTTATGA
261 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGA
*
9643 GAGAATATGTCTAAATAATGTGTCGACACCTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGA
326 GAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGA
9708 ATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCAT
391 ATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCAT
9773 CGAACCCAAAGTATAATGTAATATGTAA-TTTTCAATCTAACCGGTACAAGTATACCGGTTTTAT
456 CGAACCCAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTAT
*
9837 GAGAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCATAAT
521 GAGAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAAT
9902 GAATGGAA
586 GAATGGAA
*
9910 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCTAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
9975 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
*
10040 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTGGTGTCGATATTTTTGGTCCAGAATGAATG
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
10105 GAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
196 GAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
10170 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGA
261 ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGA
*
10235 GAGAATATGTCTAAATAATATGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGA
326 GAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGA
* *
10300 ATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATTTATAAAAAGTATCGATCCCAAAATCAT
391 ATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCAT
10365 CGAACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGG-TTT-
456 CGAACCC-AAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTA
*
10428 TGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTGGTGTCGATATTTTTGGTCCAGAA
520 TGAGAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAA
10493 TGAATGGAA
585 TGAATGGAA
10502 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
1 AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
10567 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
66 CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
10632 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATA
131 AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATA
10677 CTAATTTAAT
Statistics
Matches: 1325, Mismatches: 32, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
592 805 0.61
593 340 0.26
594 123 0.09
595 57 0.04
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (593 bp):
AACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGAACC
CAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGAGAG
AATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGAATG
GAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCATCGA
ACCCAAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTATGA
GAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAATGA
ATGGAAAACAGGGTGCACCCATAAAGTGTCGATCCATATATAAAAAGTGTCGATCCCAAAATCAT
CGAACCCAAAGTATAATGTAATATGTAATTTTTCAATCTAACCGGTACAAGTATACCGGTTTTAT
GAGAGAATATGTCTAAATAATGTGTCGACACTTTTTAGTTTGTGTCGATATTTTTGGTCCAGAAT
GAATGGAA
Found at i:12164 original size:6 final size:6
Alignment explanation
Indices: 12139--12242 Score: 66
Period size: 6 Copynumber: 17.3 Consensus size: 6
12129 AGCGGTCGCA
* * ** * *
12139 GAAGAT GAAGCT GACA-AT GAAGAT GACGAT GAAGAT GGCGAT AAATAT
1 GAAGAT GAAGAT GA-AGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
* * * * * * * *
12187 GACGAT GAAGCT GACGAT GAAGAT GATGAC GATGAT GATGAT GATGAT
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT
12235 GAAGAT GA
1 GAAGAT GA
12243 TGATCCAAAC
Statistics
Matches: 74, Mismatches: 22, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
5 1 0.01
6 72 0.97
7 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.32, T:0.20
Consensus pattern (6 bp):
GAAGAT
Found at i:12223 original size:3 final size:3
Alignment explanation
Indices: 12202--12246 Score: 63
Period size: 3 Copynumber: 15.0 Consensus size: 3
12192 TGAAGCTGAC
* * *
12202 GAT GAA GAT GAT GAC GAT GAT GAT GAT GAT GAT GAA GAT GAT GAT
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT
12247 CCAAACAAGT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.38, C:0.02, G:0.33, T:0.27
Consensus pattern (3 bp):
GAT
Found at i:12246 original size:12 final size:12
Alignment explanation
Indices: 12142--12242 Score: 94
Period size: 12 Copynumber: 8.4 Consensus size: 12
12132 GGTCGCAGAA
*
12142 GATGAAGCTGAC
1 GATGAAGATGAC
*
12154 AATGAAGATGAC
1 GATGAAGATGAC
*
12166 GATGAAGATGGC
1 GATGAAGATGAC
* *
12178 GATAAATATGAC
1 GATGAAGATGAC
*
12190 GATGAAGCTGAC
1 GATGAAGATGAC
*
12202 GATGAAGATGAT
1 GATGAAGATGAC
* * *
12214 GACGATGATGAT
1 GATGAAGATGAC
* *
12226 GATGATGATGAA
1 GATGAAGATGAC
12238 GATGA
1 GATGA
12243 TGATCCAAAC
Statistics
Matches: 73, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 73 1.00
ACGTcount: A:0.40, C:0.08, G:0.32, T:0.21
Consensus pattern (12 bp):
GATGAAGATGAC
Found at i:14016 original size:183 final size:183
Alignment explanation
Indices: 13741--14233 Score: 871
Period size: 183 Copynumber: 2.7 Consensus size: 183
13731 GCAATGCTAT
*
13741 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATCTT
1 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
*
13806 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATA-CATTGTTAAAAAGTGTCGAC
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATT-TAAAAAAGTGTCGAC
*
13870 ATTTACACATCGGAACCCATAATTATAATGTAATAGATAATTTTGTAATATAAA
130 ATTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAAA
*
13924 TGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
1 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
*
13989 GTGTCGGTACTTTATGTCCATATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCGACA
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCGACA
* *
14054 TTTACACATCGGAACCCAGATTTATAATGTAATAGATAATTTTGTAATATAAC
131 TTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAAA
* *
14107 CGGTATAAATATACCGGTTTTATGAGCGAATAGGTCTACAACCTATATCGACACTTTATAATATT
1 CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
* *
14172 GTGTCGGTACTTTATGTCCAGATTAGAAGAAAAATGTGTCGATACCATTTAAAAAAATGTCG
66 GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCG
14234 GTAATTTTAA
Statistics
Matches: 296, Mismatches: 13, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
183 292 0.99
184 4 0.01
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (183 bp):
CGGTATAAATATACCGGTTTTATGCGCGAATAGGTCTACAACCTATATCGACACTTTTTAATATT
GTGTCGGTACTTTATGTCCAGATTGGAAGAAAAATGTGTCGATACCATTTAAAAAAGTGTCGACA
TTTACACATCGGAACCCAGAATTATAATGTAATAGATAATTTTGTAATATAAA
Found at i:16087 original size:18 final size:18
Alignment explanation
Indices: 16066--16102 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
16056 GTAATTGGAG
16066 TTTGAATTTAAATTTCAA
1 TTTGAATTTAAATTTCAA
* *
16084 TTTGAGTTTGAATTTCAA
1 TTTGAATTTAAATTTCAA
16102 T
1 T
16103 ATATATTTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.51
Consensus pattern (18 bp):
TTTGAATTTAAATTTCAA
Found at i:16110 original size:24 final size:24
Alignment explanation
Indices: 16058--16104 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
16048 TTTCATATGT
* *
16058 AATTGGAGTTTGAATTTAAATTTC
1 AATTTGAGTTTGAATTTAAATATC
*
16082 AATTTGAGTTTGAATTTCAATAT
1 AATTTGAGTTTGAATTTAAATAT
16105 ATATTTCGGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.04, G:0.15, T:0.47
Consensus pattern (24 bp):
AATTTGAGTTTGAATTTAAATATC
Found at i:16404 original size:39 final size:39
Alignment explanation
Indices: 16361--16447 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
16351 TCCGATGCTC
*
16361 ATCAAAATCCAAAGCTCATATGGTGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
* *
16400 ATCAAAATTCAAATCTCATATGATGCCAAGCAAAAGGAA
1 ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
16439 ATCAAAATC
1 ATCAAAATC
16448 TACAACTTGA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.48, C:0.20, G:0.14, T:0.18
Consensus pattern (39 bp):
ATCAAAATCCAAAGCTCATATGATGCCAAGCAAAAGGAA
Found at i:16899 original size:23 final size:23
Alignment explanation
Indices: 16868--16940 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
16858 ATAGGTAAAA
*
16868 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
16891 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
16914 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
16937 ATAT
1 ATAT
16941 TGTTAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:17330 original size:23 final size:23
Alignment explanation
Indices: 17299--17371 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
17289 ATAGGTAAAA
*
17299 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
17322 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
17345 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
17368 ATAT
1 ATAT
17372 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:17763 original size:22 final size:23
Alignment explanation
Indices: 17728--17799 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
17718 AATAGGTAAA
*
17728 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
17751 ATATAA-GTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
17773 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
17796 ATAT
1 ATAT
17800 TGTAAAGTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
22 20 0.48
23 22 0.52
ACGTcount: A:0.35, C:0.04, G:0.22, T:0.39
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:18085 original size:21 final size:21
Alignment explanation
Indices: 18046--18085 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
18036 TTGTAGGTGG
*
18046 AAAATATGAAACAATATTAAA
1 AAAATATGAAACAAAATTAAA
18067 AAAAT-TGAAACATAAATTA
1 AAAATATGAAACA-AAATTA
18086 CATAACTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.25
Consensus pattern (21 bp):
AAAATATGAAACAAAATTAAA
Found at i:18185 original size:23 final size:23
Alignment explanation
Indices: 18154--18226 Score: 83
Period size: 23 Copynumber: 3.2 Consensus size: 23
18144 ATAGGTAAAA
*
18154 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* * *
18177 ATATAATGTAATATGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* * *
18200 ATATAATATAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
18223 ATAT
1 ATAT
18227 TGTAAAGTGT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.36, C:0.04, G:0.19, T:0.41
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:18431 original size:30 final size:29
Alignment explanation
Indices: 18372--18438 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 29
18362 GTACCGATAT
* *
18372 ATATTATTATTAAATTAAAAATTCTAAATA
1 ATATT-TTATAAAATTAAAAAATCTAAATA
18402 ATATTTTATAAAATATCAAAAAATC-AAATA
1 ATATTTTATAAAAT-T-AAAAAATCTAAATA
*
18432 ATTTTTT
1 ATATTTT
18439 GTGCAAATGA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 8 0.25
30 17 0.53
31 7 0.22
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.43
Consensus pattern (29 bp):
ATATTTTATAAAATTAAAAAATCTAAATA
Found at i:18615 original size:23 final size:23
Alignment explanation
Indices: 18584--18679 Score: 129
Period size: 23 Copynumber: 4.2 Consensus size: 23
18574 ATAGGTAAAA
* *
18584 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGTTT
*
18607 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGTTT
* *
18630 ATATAATGTAATATGTATCGTTT
1 ATATAATGTAATAGGTAGCGTTT
* *
18653 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGTTT
18676 ATAT
1 ATAT
18680 TGTAAAGTGT
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 65 1.00
ACGTcount: A:0.34, C:0.04, G:0.20, T:0.42
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGTTT
Found at i:18868 original size:29 final size:30
Alignment explanation
Indices: 18825--18890 Score: 75
Period size: 30 Copynumber: 2.2 Consensus size: 30
18815 GTACCGATAT
* *
18825 ATATTATTATTAAAT-T-AAAAATTCTAAATA
1 ATATT-TTATAAAATATCAAAAAATC-AAATA
18855 ATATTTTATAAAATATCAAAAAATCAAATA
1 ATATTTTATAAAATATCAAAAAATCAAATA
18885 AT-TTTT
1 ATATTTT
18891 GTGCAAATGA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
29 12 0.38
30 13 0.41
31 7 0.22
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (30 bp):
ATATTTTATAAAATATCAAAAAATCAAATA
Found at i:19066 original size:23 final size:23
Alignment explanation
Indices: 19035--19107 Score: 92
Period size: 23 Copynumber: 3.2 Consensus size: 23
19025 ATAGGTAAAA
*
19035 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* * *
19058 ATATAATGTAATAGGCATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
19081 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
19104 ATAT
1 ATAT
19108 TGTAAAGTAT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.34, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:19497 original size:23 final size:23
Alignment explanation
Indices: 19466--19538 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
19456 ATAGGTAAAA
*
19466 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
19489 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
19512 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
19535 ATAT
1 ATAT
19539 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:19924 original size:23 final size:23
Alignment explanation
Indices: 19893--19965 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
19883 ATAGGTAAAA
*
19893 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
19916 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
19939 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
19962 ATAT
1 ATAT
19966 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:20374 original size:21 final size:23
Alignment explanation
Indices: 20324--20385 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
20314 ATATGTAAAA
*
20324 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
*
20347 ATATAATGTAATAGGTATCG-TT
1 ATATAATGTAATAGGTAGCGCTT
20369 -TATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
20386 TGGTTATTGT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 16 0.44
22 2 0.06
23 18 0.50
ACGTcount: A:0.35, C:0.05, G:0.23, T:0.37
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:20392 original size:21 final size:21
Alignment explanation
Indices: 20329--20392 Score: 76
Period size: 21 Copynumber: 3.0 Consensus size: 21
20319 TAAAAATATG
*
20329 ATGTAATAGGTAGCGCTTATATA
1 ATGTAATAGGTAGTG-TT-TATA
20352 ATGTAATAGGTA-TCGTTTATA
1 ATGTAATAGGTAGT-GTTTATA
*
20373 ATGTAATAGGTAGTGGTTAT
1 ATGTAATAGGTAGTGTTTAT
20393 TGTAAAGTGT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
21 21 0.57
22 3 0.08
23 13 0.35
ACGTcount: A:0.33, C:0.05, G:0.23, T:0.39
Consensus pattern (21 bp):
ATGTAATAGGTAGTGTTTATA
Found at i:20779 original size:23 final size:23
Alignment explanation
Indices: 20748--20811 Score: 101
Period size: 23 Copynumber: 2.8 Consensus size: 23
20738 ATAGGTAAAA
*
20748 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
20771 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
20794 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
20812 TGGTTATTGT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:21238 original size:22 final size:24
Alignment explanation
Indices: 21169--21240 Score: 89
Period size: 23 Copynumber: 3.2 Consensus size: 24
21159 ATAGGTAAAA
*
21169 ATATGATGTAATAGGTAG-CGCTT
1 ATATAATGTAATAGGTAGTCGCTT
*
21192 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGTCGCTT
*
21215 ATATAA-GTAATAGGTAGTAG-TT
1 ATATAATGTAATAGGTAGTCGCTT
21237 ATAT
1 ATAT
21241 TGTAAAGTGT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
22 16 0.36
23 28 0.64
ACGTcount: A:0.36, C:0.04, G:0.21, T:0.39
Consensus pattern (24 bp):
ATATAATGTAATAGGTAGTCGCTT
Found at i:21619 original size:23 final size:22
Alignment explanation
Indices: 21588--21658 Score: 81
Period size: 23 Copynumber: 3.2 Consensus size: 22
21578 ATAGGTAAAA
*
21588 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCG-TT
* *
21611 ATATAATGTAATAGGCATCGTT
1 ATATAATGTAATAGGTAGCGTT
*
21633 -TATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAG-CGTT
21655 ATAT
1 ATAT
21659 TGTAAAGTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
21 15 0.38
22 5 0.12
23 20 0.50
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.38
Consensus pattern (22 bp):
ATATAATGTAATAGGTAGCGTT
Found at i:21656 original size:21 final size:21
Alignment explanation
Indices: 21593--21663 Score: 72
Period size: 21 Copynumber: 3.3 Consensus size: 21
21583 TAAAAATATG
*
21593 ATGTAATAGGTAGCGCTTATATA
1 ATGTAATAGGTAGTG-TT-TATA
*
21616 ATGTAATAGGCA-TCGTTTATA
1 ATGTAATAGGTAGT-GTTTATA
*
21637 ATGTAATAGGTAGTGGTTATA
1 ATGTAATAGGTAGTGTTTATA
*
21658 TTGTAA
1 ATGTAA
21664 AGTATCTATC
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
21 26 0.63
22 3 0.07
23 12 0.29
ACGTcount: A:0.34, C:0.06, G:0.23, T:0.38
Consensus pattern (21 bp):
ATGTAATAGGTAGTGTTTATA
Found at i:22040 original size:20 final size:20
Alignment explanation
Indices: 22017--22085 Score: 68
Period size: 22 Copynumber: 3.3 Consensus size: 20
22007 TAAAAATATG
22017 ATGTAATAGGTAGCGTTATA
1 ATGTAATAGGTAGCGTTATA
*
22037 ATGTAATA-GTATCGTTTATATA
1 ATGTAATAGGTAGCG--T-TATA
*
22059 ATGTAATAGGTAGTGGTTATA
1 ATGTAATAGGTAG-CGTTATA
*
22080 TTGTAA
1 ATGTAA
22086 AGTGTCTATC
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
19 5 0.12
20 8 0.20
21 10 0.25
22 13 0.32
23 3 0.08
24 1 0.03
ACGTcount: A:0.35, C:0.03, G:0.22, T:0.41
Consensus pattern (20 bp):
ATGTAATAGGTAGCGTTATA
Found at i:22455 original size:23 final size:23
Alignment explanation
Indices: 22429--22501 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
22419 AATAGGTAAA
*
22429 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
22452 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
22475 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
22498 ATAT
1 ATAT
22502 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:22891 original size:23 final size:23
Alignment explanation
Indices: 22860--22923 Score: 101
Period size: 23 Copynumber: 2.8 Consensus size: 23
22850 ATAGGTAAAA
*
22860 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
22883 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
22906 ATATAATGTAATAGGTAG
1 ATATAATGTAATAGGTAG
22924 TAGTTATATT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.36, C:0.05, G:0.22, T:0.38
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:22930 original size:23 final size:24
Alignment explanation
Indices: 22860--22932 Score: 98
Period size: 23 Copynumber: 3.2 Consensus size: 24
22850 ATAGGTAAAA
*
22860 ATATGATGTAATAGGTAG-CGCTT
1 ATATAATGTAATAGGTAGTCGCTT
*
22883 ATATAATGTAATAGGTA-TCGTTT
1 ATATAATGTAATAGGTAGTCGCTT
*
22906 ATATAATGTAATAGGTAGTAG-TT
1 ATATAATGTAATAGGTAGTCGCTT
22929 ATAT
1 ATAT
22933 TGTAAAGTGT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
23 43 0.96
24 2 0.04
ACGTcount: A:0.36, C:0.04, G:0.21, T:0.40
Consensus pattern (24 bp):
ATATAATGTAATAGGTAGTCGCTT
Found at i:23216 original size:430 final size:431
Alignment explanation
Indices: 16666--24146 Score: 13386
Period size: 431 Copynumber: 17.5 Consensus size: 431
16656 ATTAATGTTG
16666 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAA-AATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
16730 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
16794 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
16859 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
196 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
*
16924 ATAGGTAGTGGTTATATTGTTAAGTATCTATCCTTTTTATAAAAGTGTCCATAC-TTTTTCACTG
261 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
*
16988 TGGAAAACATTAATTTAAGGTTATCCTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
326 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
17053 CGTCTAATGATTTATTTTTTACGTTA-CGATATATATTATTA
391 CGTCTAATGATTTATTTTTTACG-TACCGATATATATTATTA
17094 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
*
17159 ATGAAATTATTAAATTAATATTGTAGGTGGAAAATATGAAACACTATTAAAAAAAAATTGAAACA
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAAATTGAAACA
*
17224 TAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATACAAAGTATGGACACTTTCAATATA
130 TAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATA
17289 ATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGT
195 ATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGT
*
17354 AATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACT
260 AATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACT
*
17419 CTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAG
325 GTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAG
17484 GCGTCTAATGATTTATTTTTTACGTACCGATATATATTATTA
390 GCGTCTAATGATTTATTTTTTACGTACCGATATATATTATTA
* *
17526 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATC-AAATAATCAAATAATTTTTTGTACAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
17590 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
*
17655 AAATTACATAACTTTAAAAGAATTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
17720 TAGGT-AAAATATGATGTAATAGGTAGCGCTTATATAA-GTAATAGGTATCGTTTATATAATGTA
196 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
*
17783 ATAGGTAGTGGTTATATTGTAAAGTATCTATCATTTTTATAAAAGTGTCCATACTTTTTTCACTG
261 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
*
17848 TGGAAAACATTAATTTAAGGTTATCCTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
326 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
*
17913 CGTCTAATGATTTATTTTATACGTTA--GATATATATTATTA
391 CGTCTAATGATTTATTTTTTACG-TACCGATATATATTATTA
17953 TTAAATTAAAAATTCTAAATAATA-TTTATAAAATATCAAAACAATCAAATAA-TTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
* *
18016 ATGAAATTATTAAATTAATATTGTAGGTGGAAAATATGAAACAATATT-AAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
*
18080 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATACAAAGTATGGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
* *
18145 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATATGTATCGTTTATATAATATA
196 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
* *
18210 ATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATAATTTTTTCACTG
261 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
*
18275 TGGAAAACATTAATTTAAGGTTATCTGTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
326 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
*
18340 TGTCTAATGATTTATTTTTTACGTACCGATATATATTATTA
391 CGTCTAATGATTTATTTTTTACGTACCGATATATATTATTA
18381 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAA-AATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
18445 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
*
18510 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAATATGGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
18575 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
196 TAGGTAAAAATATGATGTAATAGGTAGCGC---T-T-A--T-ATA---AT-G--TA-AT-A-G--
*
18640 ATATGTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATAA
242 ----GTATCGTTTATATAATGTAATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAA
18705 AAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAA
303 AAGTGTCCATACTTTTTTCACTGTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAA
*
18770 GATATTAATTTAGTAATTATAGGCGTCTAATGATTTAATTTTTACGTACCGATATATATTATTA
368 GATATTAATTTAGTAATTATAGGCGTCTAATGATTTATTTTTTACGTACCGATATATATTATTA
18834 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAA-AATCAAATAA-TTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
18897 ATGAAATTATTAAATTAATA-TGTGAGGTGGAAAACATGAAACACTATT-AAAAAAATTGAAACA
66 ATGAAATTATTAAATTAATATTGT-AGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACA
*
18960 TAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATACAAAGTATGGACACTTTCAATATA
130 TAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATA
*
19025 ATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGCATCGTTTATATAATGT
195 ATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGT
19090 AATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACT
260 AATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACT
* *
19155 GTGTAAAACATTAATTTAAGGTTATCCTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAG
325 GTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAG
19220 GCGTCTAATGATTTATTTTTTACGT-CGCGATATATATTATTA
390 GCGTCTAATGATTTATTTTTTACGTAC-CGATATATATTATTA
* *
19262 TTAAATTAAAAATTCTAAATAATATTTTATAAAATAACAAAACAATCAAATAATTTTTTGTGTAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
*
19327 ATGAAATTATTAAATTAATATTGTAGGTGGAAAATATGAAACACTATTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
*
19392 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATACAAAGTATGGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
19457 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
196 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
* *
19522 ATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTA
261 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
19587 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
326 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
19652 CGTCTAATGATTTATTTTTTACGTTA-CG--ATATA-TATTA
391 CGTCTAATGATTTATTTTTTACG-TACCGATATATATTATTA
19690 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
19755 ATG-AATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
19819 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
19884 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
196 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
19949 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
261 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
*
20014 TGGAAAACATTAATTTAAGGTTATCCTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
326 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
20079 CGTCTAATGATTTATTTTTTACGTTA-CGATATATATTATTA
391 CGTCTAATGATTTATTTTTTACG-TACCGATATATATTATTA
20120 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
*
20185 ATGAAATTATTAAATTAATATTGTAGGTGGAAAATATGAAACACTATTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
*
20250 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATACAAAGTATGGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
*
20315 TATGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCG-TT-TATAATGTA
196 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
*
20378 ATAGGTAGTGG-T-TATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
261 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
20441 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTTA-TAATTATAG
326 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAA-TTTAGTAATTATAG
20505 GCGTCTAATGATTTATTTTTTACGTACCGATATATATTATTA
390 GCGTCTAATGATTTATTTTTTACGTACCGATATATATTATTA
*
20547 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAA-AATAAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
*
20611 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTAAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
20676 AAATTACATAACTTTAAAAGAAGTATCGATCC-TTTTATAAAAAGTATGGACACTTTCAAT-TAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
20739 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
196 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
20804 ATAGGTAGTGG-T-TATTGTAAAGTATCTAT-CTTTTTATAAAAGTGTCCATACTTTTTTCACTG
261 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
*
20866 TGGAAAACATTAA-TTAAGGTTATCCTTTGAGTGAG-TTTAAGATATTAATTTAGTAATTATAGG
326 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
20929 CGTCTAATGATTTA-TTTTTACGTTA-CGATATATATTATTA
391 CGTCTAATGATTTATTTTTTACG-TACCGATATATATTATTA
20969 TTAAATTAAAAATTCTAAATAATA-TTTATAAAATATCAAAACAATCAAATAA-TTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
*
21032 ATGAAATTATT-AATTAATATTGTAGGTGGAAAATATGAAACACTATTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
*
21096 AAATTACATAACTTTAAAAGAAAGTATCGATCCTTTTTATACAAAGTATGGACACTTTC-A-ATA
131 AAATTACATAACTTTAAAAG-AAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATA
21159 ATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAA-GT
195 ATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGT
* * *
21223 AATAGGTAGTAGTTATATTGTAAAGTGTCTAT-TTTTTTATAAAAGTGTCCATACTTTTTTCACT
260 AATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACT
21287 GTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAG
325 GTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAG
21352 GCGTCT-ATGATTT-TTTTTTACGTACCGATATATATTATTA
390 GCGTCTAATGATTTATTTTTTACGTACCGATATATATTATTA
21392 TTAAATT-AAAATTCTAAATAATA-TTTATAAAATATCAAAA-AATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
21454 ATG-AATTATTAAATTAATATTGTAGGTGG-AAA-ATGAAACACTATT--AAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
*
21514 AAATTACATAACTTTAAAA-AGAGTATCGATCCTTTTTATACAAAGTATGGACACTTTCAATATA
131 AAATTACATAACTTTAAAAGA-AGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATA
*
21578 ATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGCATCG-TT-TATAATGT
195 ATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGT
21641 AATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACT
260 AATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACT
* *
21706 GTGTAAAACA-TAATTTAAGGTTATCCTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAG
325 GTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAG
21770 GCGTCTAATGATTTATTTTTTACGT-CGCGATATATATTATTA
390 GCGTCTAATGATTTATTTTTTACGTAC-CGATATATATTATTA
* *
21812 TT-AATT-AAAATTCTAAA-AATATTTTATAAAATAACAAAACAATC-AATAATTTTTTGTGTAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
*
21873 ATGAAATTATTAAATTAATATTGTAGGTGGAAAATATGAAACCACTATTAAAAAAAATTGAAACA
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAA-CACTATTAAAAAAAATTGAAACA
*
21938 TAAATTACATAACTTTAAAAGAAGTATCGATCC-TTTTATACAAAGTATGGACACTTTCAATATA
130 TAAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATA
22002 ATAGGTAAAAATATGATGTAATAGGTAGCG--T-TATAATGTAATA-GTATCGTTTATATAATGT
195 ATAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGT
*
22063 AATAGGTAGTGGTTATATTGTAAAGTGTCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACT
260 AATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACT
*
22128 ATGGAAAACATTAA-TTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAG
325 GTGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAG
22192 GCGTCTAATGATTTA-TTTTTACGTTA-CG--ATATA-TATTA
390 GCGTCTAATGATTTATTTTTTACG-TACCGATATATATTATTA
22230 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
22295 ATG-AATTATTAAATTAATA-TGTAGGTGGAAAACATG-AACACTATTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
22357 AAATTACATAACTTTAAAAGAAGTATCGATCC-TTTTATAAAAAGTATGGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
22421 TAGGT-AAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
196 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
22485 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
261 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
22550 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
326 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
22615 CGTCTAATGATTTATTTTTTACGTACCGATATATATTATTA
391 CGTCTAATGATTTATTTTTTACGTACCGATATATATTATTA
22656 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
22721 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
22786 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
22851 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
196 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
* * **
22916 ATAGGTAGTAGTTATATTGTAAAGTGTCTATTTTTTTTATAAAAGTGTCCATACTTTTTTCACTG
261 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
22981 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
326 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
23046 CGTCTAATGATTTATTTTTTACGTACCGATATATATATTATTA
391 CGTCTAATGATTTATTTTTTACGTACCG--ATATATATTATTA
*
23089 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAA-AAT-AAAAAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
*
23152 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATT-AAAAAAATTAAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
23216 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
23281 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
196 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
*
23346 ATAGGTAGTGGTTATATTGTAAAGTATCTATCTTTTTTATAAAAGTGTCCATACTTTTTTCACTG
261 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
*
23411 TGGAAAACATTAATTTAAGGTTATCCTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
326 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
23476 CGTCTAATGATTTATTTTTTACGTTA-CGATATATATATTATTA
391 CGTCTAATGATTTATTTTTTACG-TACCG--ATATATATTATTA
23519 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
23584 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
*
23649 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATACAAAGTATGGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
23714 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
196 TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
23779 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
261 ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
23844 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
326 TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
23909 CGTCTAATGATTTATTTTTTACGTACCGATATATATTATTA
391 CGTCTAATGATTTATTTTTTACGTACCGATATATATTATTA
23950 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
1 TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
*
24015 ATGAAATTATTAAATTAATATTGTAGGTGGAAAATATGAAACACTATTAAAAAAAATTGAAACAT
66 ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
24080 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
131 AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
24145 TA
196 TA
24147 TAATGTAATA
Statistics
Matches: 6819, Mismatches: 119, Indels: 227
0.95 0.02 0.03
Matches are distributed among these distances:
416 1 0.00
417 65 0.01
418 231 0.03
419 165 0.02
420 198 0.03
421 301 0.04
422 450 0.07
423 117 0.02
424 169 0.02
425 209 0.03
426 332 0.05
427 771 0.11
428 581 0.09
429 275 0.04
430 712 0.10
431 1235 0.18
432 220 0.03
433 353 0.05
434 2 0.00
435 2 0.00
436 2 0.00
437 3 0.00
438 3 0.00
439 1 0.00
440 2 0.00
441 2 0.00
442 1 0.00
443 3 0.00
444 3 0.00
445 2 0.00
446 2 0.00
447 1 0.00
448 1 0.00
451 112 0.02
452 55 0.01
453 237 0.03
ACGTcount: A:0.41, C:0.08, G:0.13, T:0.39
Consensus pattern (431 bp):
TTAAATTAAAAATTCTAAATAATATTTTATAAAATATCAAAACAATCAAATAATTTTTTGTGCAA
ATGAAATTATTAAATTAATATTGTAGGTGGAAAACATGAAACACTATTAAAAAAAATTGAAACAT
AAATTACATAACTTTAAAAGAAGTATCGATCCTTTTTATAAAAAGTATGGACACTTTCAATATAA
TAGGTAAAAATATGATGTAATAGGTAGCGCTTATATAATGTAATAGGTATCGTTTATATAATGTA
ATAGGTAGTGGTTATATTGTAAAGTATCTATCCTTTTTATAAAAGTGTCCATACTTTTTTCACTG
TGGAAAACATTAATTTAAGGTTATCTTTTGAGTGAGTTTTAAGATATTAATTTAGTAATTATAGG
CGTCTAATGATTTATTTTTTACGTACCGATATATATTATTA
Found at i:23321 original size:23 final size:23
Alignment explanation
Indices: 23290--23362 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
23280 ATAGGTAAAA
*
23290 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
23313 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
23336 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
23359 ATAT
1 ATAT
23363 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:23754 original size:23 final size:23
Alignment explanation
Indices: 23723--23795 Score: 101
Period size: 23 Copynumber: 3.2 Consensus size: 23
23713 ATAGGTAAAA
*
23723 ATATGATGTAATAGGTAGCGCTT
1 ATATAATGTAATAGGTAGCGCTT
* *
23746 ATATAATGTAATAGGTATCGTTT
1 ATATAATGTAATAGGTAGCGCTT
* *
23769 ATATAATGTAATAGGTAGTGGTT
1 ATATAATGTAATAGGTAGCGCTT
23792 ATAT
1 ATAT
23796 TGTAAAGTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.22, T:0.40
Consensus pattern (23 bp):
ATATAATGTAATAGGTAGCGCTT
Found at i:26855 original size:35 final size:34
Alignment explanation
Indices: 26779--26856 Score: 102
Period size: 35 Copynumber: 2.2 Consensus size: 34
26769 TTCTAAACTC
*
26779 TAAATTAAAGTATTTTAGAATTTAGGGTTTAAAA
1 TAAATTGAAGTATTTTAGAATTTAGGGTTTAAAA
* * *
26813 CATAATTGAATTATTTTAGAATTTAGGGTTTAGAAT
1 TA-AATTGAAGTATTTTAGAATTTAGGGTTTA-AAA
26849 TAAATTGA
1 TAAATTGA
26857 TGATTGTGTT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
34 1 0.03
35 33 0.89
36 3 0.08
ACGTcount: A:0.41, C:0.01, G:0.15, T:0.42
Consensus pattern (34 bp):
TAAATTGAAGTATTTTAGAATTTAGGGTTTAAAA
Found at i:29512 original size:14 final size:15
Alignment explanation
Indices: 29492--29526 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
29482 TAAGAAAAAA
29492 ATTTAATAATTTAAT
1 ATTTAATAATTTAAT
*
29507 -TTTAATATTTTAAT
1 ATTTAATAATTTAAT
29521 ATTTAA
1 ATTTAA
29527 GCAAATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
ATTTAATAATTTAAT
Found at i:30170 original size:59 final size:60
Alignment explanation
Indices: 30078--30213 Score: 154
Period size: 59 Copynumber: 2.3 Consensus size: 60
30068 ATAGATGAGT
* * *
30078 GACCATTTTGTAACTTTTAATAGTTGAAGGACTCAACAAAA-TAGCATCTTATAATT-GGA
1 GACCATTTTGTAACTTTTAATAATTGAAGGACTCAA-AAAATTAGCACCCTATAATTGGGA
** * *
30137 GACCATTTTGTAACTTTTCGTAATTCG-GGGACTCAAAAAATTAGCACCCTATAATTGGGG
1 GACCATTTTGTAACTTTTAATAATT-GAAGGACTCAAAAAATTAGCACCCTATAATTGGGA
30197 GACCAGTTTTGT-ACTTT
1 GACCA-TTTTGTAACTTT
30214 ACCCTATATA
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
58 4 0.06
59 43 0.65
60 13 0.20
61 6 0.09
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.35
Consensus pattern (60 bp):
GACCATTTTGTAACTTTTAATAATTGAAGGACTCAAAAAATTAGCACCCTATAATTGGGA
Found at i:30371 original size:4 final size:4
Alignment explanation
Indices: 30362--30392 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
30352 CAAGAAAAGC
30362 TTTA TTTA TTTA TTTA TTTA TTTA TTT- TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
30393 CAGTGAGCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:32350 original size:18 final size:19
Alignment explanation
Indices: 32327--32363 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
32317 TTTACTTTCC
*
32327 TTTT-AACTTTATCTATTT
1 TTTTAAACTTTAACTATTT
32345 TTTTAAACTTTAACTATTT
1 TTTTAAACTTTAACTATTT
32364 GGATGTGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.27, C:0.11, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTTAAACTTTAACTATTT
Found at i:34544 original size:59 final size:59
Alignment explanation
Indices: 34481--34917 Score: 322
Period size: 59 Copynumber: 7.5 Consensus size: 59
34471 ATGGCACTGT
* ** * *
34481 GTGTGCTAAAATGATAAGGAAATCATACTGAGTGTATATATTTCCATATGGAGCACTGA
1 GTGTGCTAAAATGATAAGGAAATCATATTGAGTGTATGGATTTCCAGATGGAGCACTAA
* *** * *
34540 GTGTGCT-AAACGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGG-GCATTTTA
1 GTGTGCTAAAATGATAAGGAAATCATATTGAGTGTATGGATTTCCAGAT-GGAGCA-CTAA
* ** **
34599 -TGTGCTAAAATGATAAGGGAATCATAACGAGTGTATGGATTTCCAGATAAAGCACTAA
1 GTGTGCTAAAATGATAAGGAAATCATATTGAGTGTATGGATTTCCAGATGGAGCACTAA
* *** * *
34657 GGGTGCTACAAAT-ATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGG-GCATTTTA
1 GTGTGCTA-AAATGATAAGGAAATCATATTGAGTGTATGGATTTCCAGAT-GGAGCA-CTAA
* * *
34717 -TGTGCTAAAATGGTAAGGAAATAATATTGAGTGTATGGATTTCCAGAT-AAGCACTAA
1 GTGTGCTAAAATGATAAGGAAATCATATTGAGTGTATGGATTTCCAGATGGAGCACTAA
* *** * * * **
34774 GGGTGCTATAAA-GATAAGGAAATCATATTGAAAATATGGATTTCTATATAGG-GCATTTTT
1 GTGTGCTA-AAATGATAAGGAAATCATATTGAGTGTATGGATTTCCAGAT-GGAGCA-CTAA
* * * ** **
34834 TTGTGCTAAAATGGTAAGGGAAT-ATACCGAGTGTATGGATTTCCAGATAAAGCACT-A
1 GTGTGCTAAAATGATAAGGAAATCATATTGAGTGTATGGATTTCCAGATGGAGCACTAA
* *
34891 GGGTGCTACAAA-GATAAGAAAATCATA
1 GTGTGCTA-AAATGATAAGGAAATCATA
34918 CTAATGGTAT
Statistics
Matches: 286, Mismatches: 73, Indels: 39
0.72 0.18 0.10
Matches are distributed among these distances:
57 16 0.06
58 94 0.33
59 154 0.54
60 22 0.08
ACGTcount: A:0.38, C:0.10, G:0.22, T:0.29
Consensus pattern (59 bp):
GTGTGCTAAAATGATAAGGAAATCATATTGAGTGTATGGATTTCCAGATGGAGCACTAA
Found at i:34972 original size:59 final size:59
Alignment explanation
Indices: 34893--35022 Score: 176
Period size: 59 Copynumber: 2.2 Consensus size: 59
34883 AAGCACTAGG
* *
34893 GTGCTACAAA-GATAAGAAAATCATACTAATGGTATGGA-TTTTCACATAGGGCATTTCAT
1 GTGCTA-AAATGATAAGAAAATCATACTAATGGTATGAATTTTTCA-ATAGGGCACTTCAT
* *
34952 GTGCTAAAATGATTAA-AAAATCATACTAATGGTATGAATTTTTGAATAGGGCACTTCGT
1 GTGCTAAAATGA-TAAGAAAATCATACTAATGGTATGAATTTTTCAATAGGGCACTTCAT
35011 GTGCTAAAATGA
1 GTGCTAAAATGA
35023 AAGGGGAAGT
Statistics
Matches: 64, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
58 3 0.05
59 53 0.83
60 8 0.12
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.32
Consensus pattern (59 bp):
GTGCTAAAATGATAAGAAAATCATACTAATGGTATGAATTTTTCAATAGGGCACTTCAT
Found at i:34987 original size:117 final size:118
Alignment explanation
Indices: 34482--34978 Score: 657
Period size: 117 Copynumber: 4.2 Consensus size: 118
34472 TGGCACTGTG
** * ** * *
34482 TGTGCTAAAATGATAAGGAAATCATACTGAGTGTATATATTTCCATATGGAGCACTGAGTGTGCT
1 TGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCAGATAAAGCACTAAGGGTGCT
*
34547 A-AACGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCATTTTA
66 ACAAAGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCATTTTA
*
34599 TGTGCTAAAATGATAAGGGAATCATAAC-GAGTGTATGGATTTCCAGATAAAGCACTAAGGGTGC
1 TGTGCTAAAATGATAAGGAAATCAT-ACTGAGTGTATGGATTTCCAGATAAAGCACTAAGGGTGC
*
34663 TACAAATATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCATTTTA
65 TACAAAGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCATTTTA
* * *
34717 TGTGCTAAAATGGTAAGGAAATAATATTGAGTGTATGGATTTCCAGAT-AAGCACTAAGGGTGCT
1 TGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCAGATAAAGCACTAAGGGTGCT
* * * *
34781 ATAAAGATAAGGAAATCATATTGAAAATATGGATTTCTATATAGGGCATTTTTT
66 ACAAAGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCA-TTTTA
* * *
34835 TGTGCTAAAATGGTAAGGGAAT-ATACCGAGTGTATGGATTTCCAGATAAAGCACT-AGGGTGCT
1 TGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCAGATAAAGCACTAAGGGTGCT
* * ** * * *
34898 ACAAAGATAAGAAAATCATACT-AATGGTATGGATTTTCACATAGGGCATTTCA
66 ACAAAGATAAGGAAATCATATTGAA-AATATGGATTTCCAGATAGGGCATTTTA
*
34951 TGTGCTAAAATGATTAA-AAAATCATACT
1 TGTGCTAAAATGA-TAAGGAAATCATACT
34979 AATGGTATGA
Statistics
Matches: 336, Mismatches: 36, Indels: 16
0.87 0.09 0.04
Matches are distributed among these distances:
116 20 0.06
117 191 0.57
118 125 0.37
ACGTcount: A:0.38, C:0.11, G:0.22, T:0.30
Consensus pattern (118 bp):
TGTGCTAAAATGATAAGGAAATCATACTGAGTGTATGGATTTCCAGATAAAGCACTAAGGGTGCT
ACAAAGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCATTTTA
Found at i:35209 original size:44 final size:44
Alignment explanation
Indices: 35154--35251 Score: 169
Period size: 44 Copynumber: 2.2 Consensus size: 44
35144 TAAATGAGGT
*
35154 TAATGGCAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAA
1 TAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAA
*
35198 TAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGGA
1 TAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAA
35242 TAAATGGTAA
1 T-AATGGTAA
35252 ATTTATTGAT
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
44 43 0.84
45 8 0.16
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (44 bp):
TAATGGTAAGTATATTGGTAAAATAAGCTTACGAGCTTATGGAA
Found at i:35693 original size:21 final size:21
Alignment explanation
Indices: 35667--35709 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
35657 CTATAACAGT
*
35667 ATTGTATCAGTGCATCGATAC
1 ATTGTAGCAGTGCATCGATAC
35688 ATTGTAGCAGTGCATCGATAC
1 ATTGTAGCAGTGCATCGATAC
35709 A
1 A
35710 CATTTTTGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (21 bp):
ATTGTAGCAGTGCATCGATAC
Found at i:40225 original size:19 final size:19
Alignment explanation
Indices: 40176--40225 Score: 50
Period size: 19 Copynumber: 2.5 Consensus size: 19
40166 TTTAATAATG
40176 ATATTA-TTTTATGTCATT
1 ATATTATTTTTATGTCATT
40194 ATTATTATTTTTTCTAT-TCATT
1 A-TATTA--TTTT-TATGTCATT
40216 ATATTATTTT
1 ATATTATTTT
40226 ATTTTAAGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 9
0.75 0.00 0.25
Matches are distributed among these distances:
18 1 0.04
19 9 0.33
21 5 0.19
22 9 0.33
23 3 0.11
ACGTcount: A:0.26, C:0.06, G:0.02, T:0.66
Consensus pattern (19 bp):
ATATTATTTTTATGTCATT
Found at i:41479 original size:3 final size:3
Alignment explanation
Indices: 41473--41527 Score: 92
Period size: 3 Copynumber: 17.7 Consensus size: 3
41463 GTATTATTTG
41473 TAA TAA TAAA TATA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA T-AA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
41520 TAA TAA TA
1 TAA TAA TA
41528 TAAATAATGA
Statistics
Matches: 50, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
3 44 0.88
4 6 0.12
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:42295 original size:112 final size:112
Alignment explanation
Indices: 41795--42404 Score: 807
Period size: 112 Copynumber: 5.4 Consensus size: 112
41785 ATTGAATTGA
* *
41795 GCAGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTT-GAAAA-AAAGACCTGTTCCGCTT
1 GCAGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAAAAGAGAGACCTGTTCTGCTT
* ** **
41858 ACTCTGAAGGGAATATCAGATCTGAAGGAGTTTGATTCCTTGAATCATG
66 ACTCTGAAGGGAATATCAGATCT-TA-GAAATTGATTCCTTGAATCGGG
* * * *
41907 ACAGACTTGTTCCACTTACTCTGAAGAGAATATCAAATCTTGGGAAAGAGAGACCTATTCTGCTT
1 GCAGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAAAAGAGAGACCTGTTCTGCTT
* * *
41972 ACTCTGAAAGGAATATCAGATCTTAGAGTAATTCGATTCCTTGAATAGAG
66 ACTCTGAAGGGAATATCAGATCTTAGA--AATT-GATTCCTTGAATCGGG
* *
42022 GTAGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAAAAGAGAGACTTGTT-TCGCT
1 GCAGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAAAAGAGAGACCTGTTCT-GCT
** * *
42086 TACTCTGAAGGGAATATCAGATCTGGGGAATTTGATTCCTTGAATCAGG
65 TACTCTGAAGGGAATATCAGATCT-TAGAAATTGATTCCTTGAATCGGG
* *
42135 GCAGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGGAAAGAGAGACTTGTTCTGCTT
1 GCAGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAAAAGAGAGACCTGTTCTGCTT
* * *
42200 ACTCTGAAAGGAATATAAGATCTTAGAAATTGATTCATTGAATCGGG
66 ACTCTGAAGGGAATATCAGATCTTAGAAATTGATTCCTTGAATCGGG
* * *
42247 GCAGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAAAAGAGTGACATGTTCCGCTT
1 GCAGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAAAAGAGAGACCTGTTCTGCTT
*
42312 ACTCTTAAGGGAATATCAGATCTT-GAAGGATTTTGATT-CTTGAATCGGG
66 ACTCTGAAGGGAATATCAGATCTTAGAA--A--TTGATTCCTTGAATCGGG
**
42361 GCAGACTTGTTCCACTTTTTCTGAAGGGAATATCAAATCTTGGA
1 GCAGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGA
42405 GGAGTTTGAC
Statistics
Matches: 441, Mismatches: 45, Indels: 22
0.87 0.09 0.04
Matches are distributed among these distances:
111 3 0.01
112 142 0.32
113 101 0.23
114 95 0.22
115 98 0.22
116 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (112 bp):
GCAGACTTGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAAAAGAGAGACCTGTTCTGCTT
ACTCTGAAGGGAATATCAGATCTTAGAAATTGATTCCTTGAATCGGG
Found at i:42440 original size:67 final size:67
Alignment explanation
Indices: 42302--42602 Score: 392
Period size: 67 Copynumber: 4.5 Consensus size: 67
42292 AAGAGTGACA
* * * * * * * *
42302 TGTTCCGCTTACTCTTAAGGGAATATCAGATCTTGAAGGATTTTGATTC-TTGAATCGGGGCAGA
1 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGGAGTTTGATCCATTGAATCAGGACAGA
42366 CT
66 CT
** * * *
42368 TGTTCCACTTTTTCTGAAGGGAATATCAAATCTTGGAGGAGTTTGACCCATTGAATCGGGGCAGA
1 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGGAGTTTGATCCATTGAATCAGGACAGA
42433 CT
66 CT
* * *
42435 TGTTCCACTTACTCTGAAGGGAATATCAAATATTGGAGAAGTTTTATCCATTGAATCAGGACAGA
1 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGGAGTTTGATCCATTGAATCAGGACAGA
42500 CT
66 CT
*
42502 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGGAGTTTGATCCATTGAATCAGGACAAA
1 TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGGAGTTTGATCCATTGAATCAGGACAGA
42567 CT
66 CT
* * *
42569 TGTTCCACTGT-CGCT-CAGGGAATATCAAGTCTTG
1 TGTTCCACT-TACTCTGAAGGGAATATCAAATCTTG
42603 AAAAAGAGTG
Statistics
Matches: 209, Mismatches: 24, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
66 57 0.27
67 151 0.72
68 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.32
Consensus pattern (67 bp):
TGTTCCACTTACTCTGAAGGGAATATCAAATCTTGGAGGAGTTTGATCCATTGAATCAGGACAGA
CT
Found at i:46836 original size:11 final size:11
Alignment explanation
Indices: 46819--46849 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
46809 TGAAAAAGTA
46819 AATGCAATGTG
1 AATGCAATGTG
*
46830 GATGCAATGTG
1 AATGCAATGTG
46841 AATGCAATG
1 AATGCAATG
46850 CAAGGTGTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.35, C:0.10, G:0.29, T:0.26
Consensus pattern (11 bp):
AATGCAATGTG
Found at i:51054 original size:3 final size:3
Alignment explanation
Indices: 51048--51136 Score: 101
Period size: 3 Copynumber: 30.0 Consensus size: 3
51038 GTATTATTTG
** **
51048 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TTG TAA TTG
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
**
51096 TAA TTG TAA T-A TAA TAA TAA TAA TAA TAA T-A TAAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA
51137 CGGAAAAATG
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
2 4 0.06
3 65 0.92
4 2 0.03
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:51400 original size:21 final size:22
Alignment explanation
Indices: 51371--51411 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
51361 TTGAAAGAGG
*
51371 TTGAGGATAACCT-AAAGATAA
1 TTGAAGATAACCTCAAAGATAA
*
51392 TTGAAGATAATCTCAAAGAT
1 TTGAAGATAACCTCAAAGAT
51412 GATAATTGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.46, C:0.10, G:0.17, T:0.27
Consensus pattern (22 bp):
TTGAAGATAACCTCAAAGATAA
Found at i:53860 original size:59 final size:60
Alignment explanation
Indices: 53797--54283 Score: 353
Period size: 59 Copynumber: 8.3 Consensus size: 60
53787 ATGGCACTGT
* * * * *
53797 GTGTGCTAAAATGATAAGGAAAACATACTGAGTGTATAGATTTCCATATAGAGTA-ATGA
1 GTGTGCTAAAATGATAAGGAAAACATACTGAGTGTATGGATTTCCAGATAGAGCATTTTA
* * ***
53856 GTGTGCT-AAACGATAA-GAAAATCATATTGAAAATATGGATTTCCAGATA-AGGCATTTTA
1 GTGTGCTAAAATGATAAGGAAAA-CATACTGAGTGTATGGATTTCCAGATAGA-GCATTTTA
* * * * * *
53915 -TGTGCTAAAATGGTAAGGGAATCATACTGAGTGTATGGATTTCCAGATAAAGCA-CTAA
1 GTGTGCTAAAATGATAAGGAAAACATACTGAGTGTATGGATTTCCAGATAGAGCATTTTA
* * * *** *
53973 GGGTGCTACAAAT-ATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCATTTTA
1 GTGTGCTA-AAATGATAAGGAAAACATACTGAGTGTATGGATTTCCAGATAGAGCATTTTA
* * * *
54033 -TGTGCTAAAATGGTAAGGAAATA-ATACTGAGTGTATGGATTTCCATATA-AGCA-CTAA
1 GTGTGCTAAAATGATAAGGAAA-ACATACTGAGTGTATGGATTTCCAGATAGAGCATTTTA
* * * *** *
54090 GGGTGCTATAAA-GATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCATTTTA
1 GTGTGCTA-AAATGATAAGGAAAACATACTGAGTGTATGGATTTCCAGATAGAGCATTTTA
* * * * * *
54150 -TGTGCTAAAATGGTAAGGGAACCATACTGAGTGTATGTATTTCCAGATAAAGCA--CTA
1 GTGTGCTAAAATGATAAGGAAAACATACTGAGTGTATGGATTTCCAGATAGAGCATTTTA
* * * * * * *
54207 GGGTTGCTACAAA-GATAAGGAAATCATACT-AATGGTATGGATTTTCACATAGGGCATTTCA
1 GTG-TGCTA-AAATGATAAGGAAAACATACTGAGT-GTATGGATTTCCAGATAGAGCATTTTA
54268 -TGTGCTAAAATGATAA
1 GTGTGCTAAAATGATAA
54284 CAAAATCATA
Statistics
Matches: 326, Mismatches: 78, Indels: 48
0.72 0.17 0.11
Matches are distributed among these distances:
57 10 0.03
58 91 0.28
59 208 0.64
60 16 0.05
61 1 0.00
ACGTcount: A:0.38, C:0.11, G:0.22, T:0.29
Consensus pattern (60 bp):
GTGTGCTAAAATGATAAGGAAAACATACTGAGTGTATGGATTTCCAGATAGAGCATTTTA
Found at i:54217 original size:235 final size:235
Alignment explanation
Indices: 53798--54283 Score: 746
Period size: 235 Copynumber: 2.1 Consensus size: 235
53788 TGGCACTGTG
* * *
53798 TGTGCTAAAATGATAAGGAAAACATACTGAGTGTATAGATTTCCATATAGAGTAATGAGTGTGCT
1 TGTGCTAAAATGATAAGGAAAACATACTGAGTGTATAGATTTCCATATAGAGCAATAAGGGTGCT
*
53863 AAACGATAAGAAAATCATATTGAAAATATGGATTTCCAGATAAGGCATTTTATGTGCTAAAATGG
66 AAAAGATAAGAAAATCATATTGAAAATATGGATTTCCAGATAAGGCATTTTATGTGCTAAAATGG
* *
53928 TAAGGGAATCATACTGAGTGTATGGATTTCCAGATAAAGCACTAAGGGTGCTACAAATATAAGGA
131 TAAGGGAACCATACTGAGTGTATGGATTTCCAGATAAAGCACTAAGGGTGCTACAAAGATAAGGA
* * *
53993 AATCATATTGAA-AATATGGATTTCCAGATAGGGCATTTTA
196 AATCATACT-AATAATATGGATTTCCACATAGGGCATTTCA
* * *
54033 TGTGCTAAAATGGTAAGGAAATA-ATACTGAGTGTATGGATTTCCATATA-AGCACTAAGGGTGC
1 TGTGCTAAAATGATAAGGAAA-ACATACTGAGTGTATAGATTTCCATATAGAGCAATAAGGGTGC
* *
54096 TATAAAGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCATTTTATGTGCTAAAAT
65 TA-AAAGATAAGAAAATCATATTGAAAATATGGATTTCCAGATAAGGCATTTTATGTGCTAAAAT
*
54161 GGTAAGGGAACCATACTGAGTGTATGTATTTCCAGATAAAGCACT-AGGGTTGCTACAAAGATAA
129 GGTAAGGGAACCATACTGAGTGTATGGATTTCCAGATAAAGCACTAAGGG-TGCTACAAAGATAA
** *
54225 GGAAATCATACTAATGGTATGGATTTTCACATAGGGCATTTCA
193 GGAAATCATACTAATAATATGGATTTCCACATAGGGCATTTCA
54268 TGTGCTAAAATGATAA
1 TGTGCTAAAATGATAA
54284 CAAAATCATA
Statistics
Matches: 228, Mismatches: 19, Indels: 8
0.89 0.07 0.03
Matches are distributed among these distances:
234 18 0.08
235 209 0.92
236 1 0.00
ACGTcount: A:0.38, C:0.11, G:0.22, T:0.29
Consensus pattern (235 bp):
TGTGCTAAAATGATAAGGAAAACATACTGAGTGTATAGATTTCCATATAGAGCAATAAGGGTGCT
AAAAGATAAGAAAATCATATTGAAAATATGGATTTCCAGATAAGGCATTTTATGTGCTAAAATGG
TAAGGGAACCATACTGAGTGTATGGATTTCCAGATAAAGCACTAAGGGTGCTACAAAGATAAGGA
AATCATACTAATAATATGGATTTCCACATAGGGCATTTCA
Found at i:54290 original size:59 final size:59
Alignment explanation
Indices: 54227--54339 Score: 174
Period size: 59 Copynumber: 1.9 Consensus size: 59
54217 AAAGATAAGG
* *
54227 AAATCATACTAATGGTATGGA-TTTTCACATAGGGCATTTCATGTGCTAAAATGATAACA
1 AAATCATACTAATGGTATGAATTTTTCA-ATAGGGCACTTCATGTGCTAAAATGATAACA
* *
54286 AAATCATACTAATGGTATGAATTTTTGAATAGGGCACTTCGTGTGCTAAAATGA
1 AAATCATACTAATGGTATGAATTTTTCAATAGGGCACTTCATGTGCTAAAATGA
54340 AAGGGATAGC
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
59 44 0.90
60 5 0.10
ACGTcount: A:0.36, C:0.12, G:0.19, T:0.33
Consensus pattern (59 bp):
AAATCATACTAATGGTATGAATTTTTCAATAGGGCACTTCATGTGCTAAAATGATAACA
Found at i:54304 original size:118 final size:118
Alignment explanation
Indices: 53798--54295 Score: 689
Period size: 117 Copynumber: 4.2 Consensus size: 118
53788 TGGCACTGTG
* * * * * * * * *
53798 TGTGCTAAAATGATAAGGAAAACATACTGAGTGTATAGATTTCCATATAGAGTAATGAGTGTGCT
1 TGTGCTAAAATGGTAAGGAAATCATACTGAGTGTATGGATTTCCAGATAAAGCACTAAGGGTGCT
* * *
53863 A-AACGATAAGAAAATCATATTGAAAATATGGATTTCCAGATAAGGCATTTTA
66 ACAAAGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCATTTTA
*
53915 TGTGCTAAAATGGTAAGGGAATCATACTGAGTGTATGGATTTCCAGATAAAGCACTAAGGGTGCT
1 TGTGCTAAAATGGTAAGGAAATCATACTGAGTGTATGGATTTCCAGATAAAGCACTAAGGGTGCT
*
53980 ACAAATATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCATTTTA
66 ACAAAGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCATTTTA
* *
54033 TGTGCTAAAATGGTAAGGAAATAATACTGAGTGTATGGATTTCCATAT-AAGCACTAAGGGTGCT
1 TGTGCTAAAATGGTAAGGAAATCATACTGAGTGTATGGATTTCCAGATAAAGCACTAAGGGTGCT
*
54097 ATAAAGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCATTTTA
66 ACAAAGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCATTTTA
* * *
54150 TGTGCTAAAATGGTAAGGGAACCATACTGAGTGTATGTATTTCCAGATAAAGCACT-AGGGTTGC
1 TGTGCTAAAATGGTAAGGAAATCATACTGAGTGTATGGATTTCCAGATAAAGCACTAAGGG-TGC
* ** * * *
54214 TACAAAGATAAGGAAATCATACT-AATGGTATGGATTTTCACATAGGGCATTTCA
65 TACAAAGATAAGGAAATCATATTGAA-AATATGGATTTCCAGATAGGGCATTTTA
* **
54268 TGTGCTAAAATGATAACAAAATCATACT
1 TGTGCTAAAATGGTAAGGAAATCATACT
54296 AATGGTATGA
Statistics
Matches: 341, Mismatches: 36, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
117 172 0.50
118 169 0.50
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.29
Consensus pattern (118 bp):
TGTGCTAAAATGGTAAGGAAATCATACTGAGTGTATGGATTTCCAGATAAAGCACTAAGGGTGCT
ACAAAGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCATTTTA
Found at i:54323 original size:118 final size:117
Alignment explanation
Indices: 53798--54309 Score: 656
Period size: 118 Copynumber: 4.4 Consensus size: 117
53788 TGGCACTGTG
* * * * * * *
53798 TGTGCTAAAATGATAAGGAAAACATACTGAGTGTAT-AGATTTCCATATAGAGTAATGAGTGTGC
1 TGTGCTAAAATGGTAAGGAAATCATACTGAGTGTATGA-ATTTCCAGATA-AGCACTAAGGGTGC
* * *
53862 TA-AACGATAAGAAAATCATATTGAAAATATGGATTTCCAGATAAGGCATTTTA
64 TACAAAGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCATTTTA
* *
53915 TGTGCTAAAATGGTAAGGGAATCATACTGAGTGTATGGATTTCCAGATAAAGCACTAAGGGTGCT
1 TGTGCTAAAATGGTAAGGAAATCATACTGAGTGTATGAATTTCCAGAT-AAGCACTAAGGGTGCT
*
53980 ACAAATATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCATTTTA
65 ACAAAGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCATTTTA
* * *
54033 TGTGCTAAAATGGTAAGGAAATAATACTGAGTGTATGGATTTCCATATAAGCACTAAGGGTGCTA
1 TGTGCTAAAATGGTAAGGAAATCATACTGAGTGTATGAATTTCCAGATAAGCACTAAGGGTGCTA
*
54098 TAAAGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCATTTTA
66 CAAAGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCATTTTA
* * *
54150 TGTGCTAAAATGGTAAGGGAACCATACTGAGTGTATGTATTTCCAGATAAAGCACT-AGGGTTGC
1 TGTGCTAAAATGGTAAGGAAATCATACTGAGTGTATGAATTTCCAGAT-AAGCACTAAGGG-TGC
* ** * * *
54214 TACAAAGATAAGGAAATCATACT-AATGGTATGGATTTTCACATAGGGCATTTCA
64 TACAAAGATAAGGAAATCATATTGAA-AATATGGATTTCCAGATAGGGCATTTTA
* ** *
54268 TGTGCTAAAATGATAACAAAATCATACT-AATGGTATGAATTT
1 TGTGCTAAAATGGTAAGGAAATCATACTGAGT-GTATGAATTT
54310 TTGAATAGGG
Statistics
Matches: 351, Mismatches: 37, Indels: 13
0.88 0.09 0.03
Matches are distributed among these distances:
117 172 0.49
118 179 0.51
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.30
Consensus pattern (117 bp):
TGTGCTAAAATGGTAAGGAAATCATACTGAGTGTATGAATTTCCAGATAAGCACTAAGGGTGCTA
CAAAGATAAGGAAATCATATTGAAAATATGGATTTCCAGATAGGGCATTTTA
Found at i:54526 original size:44 final size:43
Alignment explanation
Indices: 54471--54567 Score: 140
Period size: 44 Copynumber: 2.2 Consensus size: 43
54461 TAAATGAGGT
* *
54471 TAATGGCAAGTATATTGGTAAAATAAGATTACAAGCTTATGGAA
1 TAATGGTAAGTATATTGGTAAAATAAGATTACAA-CTTAAGGAA
* *
54515 TAATGGTAAGTATATTGGTAAAATAAGCTTACAACTTAAGGGA
1 TAATGGTAAGTATATTGGTAAAATAAGATTACAACTTAAGGAA
54558 TAAATGGTAA
1 T-AATGGTAA
54568 ATTTATTGAT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
43 8 0.17
44 40 0.83
ACGTcount: A:0.43, C:0.06, G:0.21, T:0.30
Consensus pattern (43 bp):
TAATGGTAAGTATATTGGTAAAATAAGATTACAACTTAAGGAA
Found at i:54998 original size:21 final size:21
Alignment explanation
Indices: 54954--55000 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
54944 TTCGGAAATT
*
54954 ACTGTAGCAGTGCATCGATGC
1 ACTGTAGCAGTGCATCGATAC
* *
54975 ACTGTAGCAGTGCATTGGTAC
1 ACTGTAGCAGTGCATCGATAC
54996 ACTGT
1 ACTGT
55001 TCACTGTTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (21 bp):
ACTGTAGCAGTGCATCGATAC
Found at i:55007 original size:7 final size:7
Alignment explanation
Indices: 54995--55050 Score: 53
Period size: 7 Copynumber: 8.3 Consensus size: 7
54985 TGCATTGGTA
54995 CACTGTT
1 CACTGTT
55002 CACTGTT
1 CACTGTT
* *
55009 CACGGGT
1 CACTGTT
*
55016 -ATTGTT
1 CACTGTT
*
55022 CATTGTT
1 CACTGTT
55029 -ACTGTT
1 CACTGTT
55035 CACTGTT
1 CACTGTT
*
55042 CACTATT
1 CACTGTT
55049 CA
1 CA
55051 TAAAAAAATC
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
6 8 0.20
7 32 0.80
ACGTcount: A:0.18, C:0.23, G:0.16, T:0.43
Consensus pattern (7 bp):
CACTGTT
Found at i:60888 original size:18 final size:17
Alignment explanation
Indices: 60867--60906 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
60857 AAAATTTCAA
60867 AAATTAGCTAGATTTTTG
1 AAATTAGCT-GATTTTTG
**
60885 AAATTTTCTGATTTTTG
1 AAATTAGCTGATTTTTG
60902 AAATT
1 AAATT
60907 TTGGCAATCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.33, C:0.05, G:0.12, T:0.50
Consensus pattern (17 bp):
AAATTAGCTGATTTTTG
Found at i:61595 original size:3 final size:3
Alignment explanation
Indices: 61587--61669 Score: 85
Period size: 3 Copynumber: 27.0 Consensus size: 3
61577 AAATTTAAAT
** * *
61587 TTA TTA TTA TTA TTA AAA TTA TTA TTA TTA ATA TTA TTA TTA TGA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
61635 TAA TTA TTA ATA TTA ATA TTA TATA TTA TATA TTA
1 TTA TTA TTA TTA TTA TTA TTA T-TA TTA T-TA TTA
61670 CAAAGCCCAA
Statistics
Matches: 64, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
3 58 0.91
4 6 0.09
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (3 bp):
TTA
Found at i:63150 original size:14 final size:17
Alignment explanation
Indices: 63125--63161 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
63115 AATTATTATT
63125 TATTTACAATTT-AATA
1 TATTTACAATTTCAATA
63141 -ATTT-CAATTTCAATA
1 TATTTACAATTTCAATA
63156 TATTTA
1 TATTTA
63162 TTTATTACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 5
0.78 0.00 0.22
Matches are distributed among these distances:
14 6 0.33
15 8 0.44
16 4 0.22
ACGTcount: A:0.41, C:0.08, G:0.00, T:0.51
Consensus pattern (17 bp):
TATTTACAATTTCAATA
Found at i:63247 original size:23 final size:23
Alignment explanation
Indices: 63212--63255 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
63202 TAATAAATAA
** *
63212 TATTTATTTATTTATTTTTATCC
1 TATTTATAAATTTAATTTTATCC
63235 TATTTATAAATTTAATTTTAT
1 TATTTATAAATTTAATTTTAT
63256 AAATTAGTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.66
Consensus pattern (23 bp):
TATTTATAAATTTAATTTTATCC
Found at i:64040 original size:18 final size:19
Alignment explanation
Indices: 64018--64054 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
64008 TTTCTTTCAA
64018 ATTTTT-TATTAC-TTATT
1 ATTTTTATATTACTTTATT
64035 ATTTTTATATTACTTTATT
1 ATTTTTATATTACTTTATT
64054 A
1 A
64055 ATATTTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.33
18 6 0.33
19 6 0.33
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (19 bp):
ATTTTTATATTACTTTATT
Found at i:69357 original size:6 final size:6
Alignment explanation
Indices: 69336--69384 Score: 59
Period size: 6 Copynumber: 8.5 Consensus size: 6
69326 TCCAGCAAAG
*
69336 AAAGAA GAAGGAA AAAGAA AAAG-A AAAG-A AAAGAA AAAG-A AAAGAA
1 AAAGAA -AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA
69382 AAA
1 AAA
69385 AATGAAAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
5 15 0.39
6 18 0.47
7 5 0.13
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:69362 original size:5 final size:5
Alignment explanation
Indices: 69348--69402 Score: 58
Period size: 5 Copynumber: 10.6 Consensus size: 5
69338 AGAAGAAGGA
* *
69348 AAAAG AAAAAG AAAAG AAAAG AAAAAG AAAAG AAAA- AAATG AAAAA AAGAAG
1 AAAAG -AAAAG AAAAG AAAAG -AAAAG AAAAG AAAAG AAAAG AAAAG AA-AAG
69400 AAA
1 AAA
69403 TTGAATCAAG
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
4 3 0.07
5 25 0.60
6 14 0.33
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (5 bp):
AAAAG
Found at i:69362 original size:11 final size:11
Alignment explanation
Indices: 69346--69384 Score: 62
Period size: 11 Copynumber: 3.5 Consensus size: 11
69336 AAAGAAGAAG
69346 GAAAAAGAAAA
1 GAAAAAGAAAA
69357 -AGAAAAGAAAA
1 GA-AAAAGAAAA
69368 GAAAAAGAAAA
1 GAAAAAGAAAA
69379 GAAAAA
1 GAAAAA
69385 AATGAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 1 0.04
11 24 0.92
12 1 0.04
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (11 bp):
GAAAAAGAAAA
Found at i:69363 original size:28 final size:30
Alignment explanation
Indices: 69334--69402 Score: 83
Period size: 28 Copynumber: 2.4 Consensus size: 30
69324 CATCCAGCAA
* *
69334 AGAAAGAAGAAGGAAAA-AGAAAAA-GAAA
1 AGAAAGAAGAAAGAAAAGAAAAAAATGAAA
69362 AGAAAAGAA-AAAGAAAAGAAAAAAATGAAA
1 AG-AAAGAAGAAAGAAAAGAAAAAAATGAAA
69392 A-AAAGAAGAAA
1 AGAAAGAAGAAA
69403 TTGAATCAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
28 15 0.43
29 15 0.43
30 5 0.14
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.01
Consensus pattern (30 bp):
AGAAAGAAGAAAGAAAAGAAAAAAATGAAA
Found at i:69367 original size:16 final size:16
Alignment explanation
Indices: 69348--69383 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
69338 AGAAGAAGGA
69348 AAAAGAAAAAGAAAAG
1 AAAAGAAAAAGAAAAG
69364 AAAAGAAAAAGAAAAG
1 AAAAGAAAAAGAAAAG
69380 AAAA
1 AAAA
69384 AAATGAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (16 bp):
AAAAGAAAAAGAAAAG
Found at i:69403 original size:16 final size:14
Alignment explanation
Indices: 69332--69398 Score: 64
Period size: 16 Copynumber: 4.4 Consensus size: 14
69322 CTCATCCAGC
69332 AAAGAAAGAAGAAGGAA
1 AAAGAAA-AAGAA--AA
69349 AAAGAAAAAGAAAAGA
1 AAAGAAAAAG-AAA-A
69365 AAAGAAAAAGAAAA
1 AAAGAAAAAGAAAA
*
69379 GAAA-AAAATGAAAA
1 -AAAGAAAAAGAAAA
69393 AAAGAA
1 AAAGAA
69399 GAAATTGAAT
Statistics
Matches: 45, Mismatches: 1, Indels: 11
0.79 0.02 0.19
Matches are distributed among these distances:
13 3 0.07
14 12 0.27
15 7 0.16
16 14 0.31
17 9 0.20
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.01
Consensus pattern (14 bp):
AAAGAAAAAGAAAA
Found at i:71746 original size:114 final size:114
Alignment explanation
Indices: 71546--71763 Score: 337
Period size: 114 Copynumber: 1.9 Consensus size: 114
71536 CGTTCTCGTG
* ** *
71546 GTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGATTTGG
1 GTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTAAAATGATTCGG
* * * *
71611 TATGAACCCCAAAACTAATCATTAGATTTGAAAGATGAATTTGCTCATA
66 TAGGAACCCCAAAACCAATCATTAGAATTAAAAGATGAATTTGCTCATA
*
71660 GTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTAAAATGGTTCGG
1 GTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTAAAATGATTCGG
* *
71725 TAGGAACCCCAGAACCAATCATTGGAATTAAAAGATGAA
66 TAGGAACCCCAAAACCAATCATTAGAATTAAAAGATGAA
71764 CTACATGATC
Statistics
Matches: 93, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
114 93 1.00
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (114 bp):
GTAGAAATAAGGAGACCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTAAAATGATTCGG
TAGGAACCCCAAAACCAATCATTAGAATTAAAAGATGAATTTGCTCATA
Found at i:73925 original size:50 final size:50
Alignment explanation
Indices: 73850--74043 Score: 325
Period size: 50 Copynumber: 3.9 Consensus size: 50
73840 AGAAATCTTG
*
73850 GCAGAAACCACAGGAAATGATGAATGTGTTGTCAAATGTTTTACATCTGA
1 GCAGAAACCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTACATCTGA
*
73900 GCAGAAACCACATGAAAGGATGAATGTGTTGTCAAATGTTTTACATCTGA
1 GCAGAAACCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTACATCTGA
* *
73950 GTAGAAACCACAGGAAAGGATGCATGTGTTGTCAAATGTTTTACATCTGA
1 GCAGAAACCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTACATCTGA
* * *
74000 GTAGAAACCACAGGAAATGATGAATATGTTGTCAAATGTTTTAC
1 GCAGAAACCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTAC
74044 GAACCAATTA
Statistics
Matches: 136, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 136 1.00
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.28
Consensus pattern (50 bp):
GCAGAAACCACAGGAAAGGATGAATGTGTTGTCAAATGTTTTACATCTGA
Found at i:74436 original size:22 final size:22
Alignment explanation
Indices: 74410--74486 Score: 145
Period size: 22 Copynumber: 3.5 Consensus size: 22
74400 ATCTACACTC
74410 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
74432 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
*
74454 TTTAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
74476 TTCAAAGATGA
1 TTCAAAGATGA
74487 AAGCTTTATG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 53 1.00
ACGTcount: A:0.34, C:0.12, G:0.14, T:0.40
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:75266 original size:164 final size:166
Alignment explanation
Indices: 74994--75316 Score: 535
Period size: 164 Copynumber: 2.0 Consensus size: 166
74984 AAAATGAGCA
74994 TTATCTTACGATTGGGGCATGTTACCCAATCAACATGTTATTTCAAAAAAATAATGAGAAAACAA
1 TTATCTTACGATTGGGGCATGTTACCCAATCAACATGTTATTTCAAAAAAATAATGAGAAAACAA
** * * *
75059 TTTCCATAGTTTCTCATTTTATCTTTTCTAAAATGAAATTGTTGGAAAGTAAGAAAACGATTTTC
66 TTTCCATAGTTTCTCATTCAATCTTTTCGAAAATGAAATTGTTGAAAAGTAAGAAAACGATTTCC
75124 TTAG-TTTTTTACTTAGTAAACTATTTCCAACAGCC
131 TTAGTTTTTTTACTTAGTAAACTATTTCCAACAGCC
* ** *
75159 TTATCTTGA-GATTGGGGCATGTTACCTAATCAACATGTTATTT-TGAAAAATAATGAGAAAACG
1 TTATCTT-ACGATTGGGGCATGTTACCCAATCAACATGTTATTTCAAAAAAATAATGAGAAAACA
75222 ATTTCCATAGTTTCTCATTCAATCTTTTCGAAAATGAAATTGTTGAAAAGTAAGAAAACGATTTC
65 ATTTCCATAGTTTCTCATTCAATCTTTTCGAAAATGAAATTGTTGAAAAGTAAGAAAACGATTTC
75287 CTTAGTTTTTTTACTTAGTAAACTATTTCC
130 CTTAGTTTTTTTACTTAGTAAACTATTTCC
75317 CACATCTGTA
Statistics
Matches: 147, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
164 82 0.56
165 64 0.44
166 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (166 bp):
TTATCTTACGATTGGGGCATGTTACCCAATCAACATGTTATTTCAAAAAAATAATGAGAAAACAA
TTTCCATAGTTTCTCATTCAATCTTTTCGAAAATGAAATTGTTGAAAAGTAAGAAAACGATTTCC
TTAGTTTTTTTACTTAGTAAACTATTTCCAACAGCC
Found at i:75418 original size:76 final size:76
Alignment explanation
Indices: 75319--75682 Score: 683
Period size: 76 Copynumber: 4.8 Consensus size: 76
75309 CTATTTCCCA
*
75319 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
75384 AGCCTTAGGGT
66 AGCCTTAGGGT
75395 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
75460 AGCCTTAGAGT
66 AGCCTTAGGGT
* *
75471 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGATCTTTTTGTTGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
75536 AGCCTTAGGGT
66 AGCCTTAGGGT
*
75547 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAACCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
75612 AGCCTTAGGGT
66 AGCCTTAGGGT
75623 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTT
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTT
75683 GTTATTTTGA
Statistics
Matches: 279, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 279 1.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.35
Consensus pattern (76 bp):
CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTTAGGGT
Found at i:75903 original size:76 final size:76
Alignment explanation
Indices: 75804--76000 Score: 360
Period size: 76 Copynumber: 2.6 Consensus size: 76
75794 CTATTTCACA
75804 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
75869 AGCCTTAGAGT
66 AGCCTTAGAGT
75880 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
75945 AGCCTTAGGGT
66 AGCCTTAGAGT
* *
75956 CATCTGTAAGTCCTTCAGTGCATGATGTTTTCAAAAA-CCTTCGGG
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGG
76001 TCATCTGTAA
Statistics
Matches: 118, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
75 8 0.07
76 110 0.93
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.34
Consensus pattern (76 bp):
CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTTAGAGT
Found at i:76010 original size:46 final size:45
Alignment explanation
Indices: 75933--76081 Score: 262
Period size: 45 Copynumber: 3.3 Consensus size: 45
75923 GGGAGCTTTT
* *
75933 TGATGTTTTCAAAGCCTTAGGGTCATCTGTAAGTCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCA
75978 TGATGTTTTCAAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCA
1 TGATGTTTTC-AAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCA
*
76024 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGCCCTTCAGTGCA
1 TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCA
76069 TGATGTTTTCAAA
1 TGATGTTTTCAAA
76082 CATTTCCATC
Statistics
Matches: 100, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
45 57 0.57
46 43 0.43
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (45 bp):
TGATGTTTTCAAAACCTTCGGGTCATCTGTAAGTCCTTCAGTGCA
Found at i:76217 original size:3 final size:3
Alignment explanation
Indices: 76209--76276 Score: 82
Period size: 3 Copynumber: 22.0 Consensus size: 3
76199 CATTTTAAAT
* **
76209 TTA TTA TTA TTT TTA AAA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
76257 ATA TTA TATA TTA TTTA TTA
1 TTA TTA T-TA TTA -TTA TTA
76277 AATATTACAA
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
3 49 0.89
4 6 0.11
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:82048 original size:22 final size:22
Alignment explanation
Indices: 82020--82065 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
82010 GCTTCTGTCG
82020 TTGAATGTTAAACCTTAATGGT
1 TTGAATGTTAAACCTTAATGGT
82042 TTGAATGTTAAACCTTAATGGT
1 TTGAATGTTAAACCTTAATGGT
82064 TT
1 TT
82066 CTGTCTATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.30, C:0.09, G:0.17, T:0.43
Consensus pattern (22 bp):
TTGAATGTTAAACCTTAATGGT
Found at i:89271 original size:95 final size:95
Alignment explanation
Indices: 89171--89465 Score: 259
Period size: 95 Copynumber: 3.1 Consensus size: 95
89161 TTAAATCATA
89171 AAAAATAAATAAATAAGTTTAACATAAGTTCGAGATGATAAAGTTACTACTATTTACGAAATTAG
1 AAAAATAAATAAATAAGTTTAACATAAGTTCGAGATGATAAAGTTACTACTATTTACGAAATTAG
89236 AATTGATTATATAAAAGATACTTAATGTAG
66 AATTGATTATATAAAAGATACTTAATGTAG
* * * * * * ** * *
89266 AAAAATAATTTTATATAATTAA-TTT-A-AT-ATTTTG-GTTCATTAA-TTATTAAAATCTA-AA
1 AAAAATAA----ATA-AA-TAAGTTTAACATAAGTTCGAGATGATAAAGTTACTACTATTTACGA
* * * ** * *
89324 ATATTA-AATTAATAAT-TATGATTATCAAATTAAATCATA-
60 A-ATTAGAATTGATTATATA-AAAGAT--ACTT-AAT-GTAG
89363 AAAAATAAATAAATAAGTTTAACATAAGTTCGAGATGATAAAGTTACTACTATTTACGAAATTAG
1 AAAAATAAATAAATAAGTTTAACATAAGTTCGAGATGATAAAGTTACTACTATTTACGAAATTAG
89428 AATTGATTATATAAAAGATACTTAATGTAG
66 AATTGATTATATAAAAGATACTTAATGTAG
89458 AAAAATAA
1 AAAAATAA
89466 TTTTATATAA
Statistics
Matches: 144, Mismatches: 34, Indels: 44
0.65 0.15 0.20
Matches are distributed among these distances:
91 3 0.02
92 5 0.03
93 6 0.04
94 17 0.12
95 36 0.25
96 18 0.12
97 28 0.19
98 17 0.12
99 6 0.04
100 5 0.03
101 3 0.02
ACGTcount: A:0.49, C:0.05, G:0.09, T:0.36
Consensus pattern (95 bp):
AAAAATAAATAAATAAGTTTAACATAAGTTCGAGATGATAAAGTTACTACTATTTACGAAATTAG
AATTGATTATATAAAAGATACTTAATGTAG
Found at i:89418 original size:192 final size:195
Alignment explanation
Indices: 89087--89478 Score: 745
Period size: 192 Copynumber: 2.0 Consensus size: 195
89077 TTATTTAAAG
*
89087 ATTAATTTAATATTTTGGTTCATTAATTATTAAAATCTAAAATAATATTAAATTAATAAATTATT
1 ATTAATTTAATATTTTGGTTCATTAATTATTAAAATCT-AAATAATATTAAATTAATAAATTATG
89152 ATTATCAAATTAAATCATAAAAAATAAATAAATAAGTTTAACATAAGTTCGAGATGATAAAGTTA
65 ATTATCAAATTAAATCATAAAAAATAAATAAATAAGTTTAACATAAGTTCGAGATGATAAAGTTA
89217 CTACTATTTACGAAATTAGAATTGATTATATAAAAGATACTTAATGTAGAAAAATAATTTTATAT
130 CTACTATTTACGAAATTAGAATTGATTATATAAAAGATACTTAATGTAGAAAAATAATTTTATAT
89282 A
195 A
89283 ATTAATTTAATATTTTGGTTCATTAATTATTAAAATCT-AA-AATATTAAATTAAT-AATTATGA
1 ATTAATTTAATATTTTGGTTCATTAATTATTAAAATCTAAATAATATTAAATTAATAAATTATGA
89345 TTATCAAATTAAATCATAAAAAATAAATAAATAAGTTTAACATAAGTTCGAGATGATAAAGTTAC
66 TTATCAAATTAAATCATAAAAAATAAATAAATAAGTTTAACATAAGTTCGAGATGATAAAGTTAC
89410 TACTATTTACGAAATTAGAATTGATTATATAAAAGATACTTAATGTAGAAAAATAATTTTATATA
131 TACTATTTACGAAATTAGAATTGATTATATAAAAGATACTTAATGTAGAAAAATAATTTTATATA
89475 ATTA
1 ATTA
89479 TTAATTAGTC
Statistics
Matches: 195, Mismatches: 1, Indels: 4
0.98 0.00 0.02
Matches are distributed among these distances:
192 141 0.72
193 14 0.07
194 2 0.01
196 38 0.19
ACGTcount: A:0.49, C:0.05, G:0.07, T:0.39
Consensus pattern (195 bp):
ATTAATTTAATATTTTGGTTCATTAATTATTAAAATCTAAATAATATTAAATTAATAAATTATGA
TTATCAAATTAAATCATAAAAAATAAATAAATAAGTTTAACATAAGTTCGAGATGATAAAGTTAC
TACTATTTACGAAATTAGAATTGATTATATAAAAGATACTTAATGTAGAAAAATAATTTTATATA
Found at i:100339 original size:15 final size:15
Alignment explanation
Indices: 100311--100343 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
100301 GCTATTAACT
100311 TATCGATAATGTTTCA
1 TATCGATAATGTTT-A
100327 TATCGAT-ATGTTTA
1 TATCGATAATGTTTA
100341 TAT
1 TAT
100344 TTAACTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.24
15 6 0.35
16 7 0.41
ACGTcount: A:0.30, C:0.09, G:0.12, T:0.48
Consensus pattern (15 bp):
TATCGATAATGTTTA
Found at i:104169 original size:15 final size:16
Alignment explanation
Indices: 104144--104176 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
104134 TTTTTAGCCC
104144 TTATGTTTAAGGATAT
1 TTATGTTTAAGGATAT
*
104160 TTAT-TTTAAGGTTAT
1 TTATGTTTAAGGATAT
104175 TT
1 TT
104177 TCTATATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (16 bp):
TTATGTTTAAGGATAT
Found at i:112013 original size:14 final size:14
Alignment explanation
Indices: 111994--112020 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
111984 CCGTTCTTCA
111994 CCACTATTCTTCTG
1 CCACTATTCTTCTG
112008 CCACTATTCTTCT
1 CCACTATTCTTCT
112021 ATCTTCTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.37, G:0.04, T:0.44
Consensus pattern (14 bp):
CCACTATTCTTCTG
Found at i:112759 original size:32 final size:32
Alignment explanation
Indices: 112712--112791 Score: 88
Period size: 32 Copynumber: 2.5 Consensus size: 32
112702 AAATACTGTT
* * *
112712 GGGCCTTAGAACCTACCCAAAGGACTACCTTA
1 GGGCCTAAGAGCCTACCCAAAGGACTACCTCA
* * * *
112744 GGGCCTAAGAGCCTACCCAATGGAGTATCTCG
1 GGGCCTAAGAGCCTACCCAAAGGACTACCTCA
*
112776 GGGTCTAAGAGCCTAC
1 GGGCCTAAGAGCCTAC
112792 GTAAGGGTCA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.28, C:0.29, G:0.25, T:0.19
Consensus pattern (32 bp):
GGGCCTAAGAGCCTACCCAAAGGACTACCTCA
Found at i:113128 original size:31 final size:31
Alignment explanation
Indices: 113060--113120 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 31
113050 ACCTAAGAGA
* *
113060 AATACCTTGAGGCCTTAGAGTCTACCCCAGG
1 AATACCTTGAGGCCTTAGAGCCTACCCAAGG
*
113091 AATACCTTG-GGTCTTAGAGCCTACCCAAGG
1 AATACCTTGAGGCCTTAGAGCCTACCCAAGG
113121 GAGTACCTCG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 18 0.67
31 9 0.33
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (31 bp):
AATACCTTGAGGCCTTAGAGCCTACCCAAGG
Found at i:113145 original size:27 final size:27
Alignment explanation
Indices: 113113--113167 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
113103 CTTAGAGCCT
**
113113 ACCCAAGGGAGTACCTCGGGGCCTAAG
1 ACCCAAGGGAACACCTCGGGGCCTAAG
*
113140 ACCCAAGGGAACATCTCGGGGCCTAAG
1 ACCCAAGGGAACACCTCGGGGCCTAAG
113167 A
1 A
113168 GCTTACTCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.29, C:0.29, G:0.31, T:0.11
Consensus pattern (27 bp):
ACCCAAGGGAACACCTCGGGGCCTAAG
Found at i:113947 original size:18 final size:19
Alignment explanation
Indices: 113904--113947 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
113894 ACAATCTTTC
*
113904 ATTCCTAGTAATGATTACT
1 ATTCCTAGAAATGATTACT
*
113923 -TTACTAGAAATGATTA-T
1 ATTCCTAGAAATGATTACT
113940 ATTCCTAG
1 ATTCCTAG
113948 TATTCTGGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
17 1 0.05
18 20 0.95
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.41
Consensus pattern (19 bp):
ATTCCTAGAAATGATTACT
Found at i:116600 original size:19 final size:20
Alignment explanation
Indices: 116570--116623 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
116560 ACTTTCACAT
* *
116570 TTCAGAATTTATTTTCTATA
1 TTCAGAACTTATTTTCCATA
116590 TT-AGAACTTA-TTTCCATA
1 TTCAGAACTTATTTTCCATA
*
116608 TTCATAACTTATTTTC
1 TTCAGAACTTATTTTC
116624 AGACTCATAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 9 0.31
19 14 0.48
20 6 0.21
ACGTcount: A:0.30, C:0.15, G:0.04, T:0.52
Consensus pattern (20 bp):
TTCAGAACTTATTTTCCATA
Found at i:116671 original size:19 final size:19
Alignment explanation
Indices: 116578--116672 Score: 93
Period size: 19 Copynumber: 5.0 Consensus size: 19
116568 ATTTCAGAAT
* *
116578 TTATTTTCTATATT-AGAAC
1 TTATTTTC-ATATTCATAGC
* *
116597 TTATTTCCATATTCATAAC
1 TTATTTTCATATTCATAGC
* *
116616 TTATTTTCAGACTCATAGC
1 TTATTTTCATATTCATAGC
* *
116635 TTACTGTCATATTCATAGC
1 TTATTTTCATATTCATAGC
*
116654 TTATTTTCAAATTCATAGC
1 TTATTTTCATATTCATAGC
116673 CCAATGCATA
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
18 5 0.08
19 57 0.92
ACGTcount: A:0.29, C:0.18, G:0.06, T:0.46
Consensus pattern (19 bp):
TTATTTTCATATTCATAGC
Found at i:117075 original size:2 final size:2
Alignment explanation
Indices: 117068--117108 Score: 73
Period size: 2 Copynumber: 20.0 Consensus size: 2
117058 TTTCTTTAAC
117068 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT CAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
117109 TCATCATGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 36 0.95
3 2 0.05
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:117112 original size:6 final size:7
Alignment explanation
Indices: 117067--117112 Score: 50
Period size: 6 Copynumber: 7.4 Consensus size: 7
117057 CTTTCTTTAA
117067 CATATAT
1 CATATAT
117074 -ATATAT
1 CATATAT
117080 -ATATAT
1 CATATAT
117086 -ATATAT
1 CATATAT
117092 -ATATAT
1 CATATAT
117098 -ATATAT
1 CATATAT
117104 CATAT-T
1 CATATAT
117110 CAT
1 CAT
117113 CATGTAATAA
Statistics
Matches: 38, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
6 34 0.89
7 4 0.11
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.48
Consensus pattern (7 bp):
CATATAT
Found at i:119265 original size:159 final size:162
Alignment explanation
Indices: 119028--119337 Score: 466
Period size: 159 Copynumber: 1.9 Consensus size: 162
119018 CTTGCCCTCA
* *
119028 GCACACAGCAAAAAGGGGAGCCAACCTAAGGATATACCTTGGATCTACCCAAGGACATCCTTAAA
1 GCACACAGC-AAAAGGGGAACCAACCTAAGGATATACCTTGGACCTACCCAAGGACATCCTTAAA
* *
119093 TCCGTAGGGTTACCTTAAGCACACAGCTAAGGGAACCAACCTAAAGATATACCTT-GGGCCTACC
65 TCCATAGGGTTACCTTAAGCACACAGCAAAGGGAACCAACCTAAAGATATACCTTGGGGCCTACC
119157 CAAGATATCCTTAGGTCCGTAGGGTTATCTTAT
130 CAAGATATCCTTAGGTCCGTAGGGTTATCTTAT
* **
119190 GCACACAGC-AAA-GGGAACCAACCTAAGGATATACCTTAGGACCTACCCAA-GATATCCTTAGG
1 GCACACAGCAAAAGGGGAACCAACCTAAGGATATACCTT-GGACCTACCCAAGGACATCCTTAAA
* * * *
119252 TCCATAGGGTTACCTTATGCACACAGCAAAGGGAATCAACCTGAGGATATACCTTGGGGCCTACC
65 TCCATAGGGTTACCTTAAGCACACAGCAAAGGGAACCAACCTAAAGATATACCTTGGGGCCTACC
*
119317 CAAGATATCCTTAGGTTCGTA
130 CAAGATATCCTTAGGTCCGTA
119338 AGGACTTATA
Statistics
Matches: 134, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
159 82 0.61
160 43 0.32
162 9 0.07
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.21
Consensus pattern (162 bp):
GCACACAGCAAAAGGGGAACCAACCTAAGGATATACCTTGGACCTACCCAAGGACATCCTTAAAT
CCATAGGGTTACCTTAAGCACACAGCAAAGGGAACCAACCTAAAGATATACCTTGGGGCCTACCC
AAGATATCCTTAGGTCCGTAGGGTTATCTTAT
Found at i:119269 original size:80 final size:79
Alignment explanation
Indices: 119028--119337 Score: 431
Period size: 80 Copynumber: 3.8 Consensus size: 79
119018 CTTGCCCTCA
* * * **
119028 GCACACAGCAAAAAGGGGAGCCAACCTAAGGATATACCTTGGATCTACCCAAGGACATCCTTAAA
1 GCACACAGC--AAA-GGGAACCAACCTAAGGATATACCTTGGACCTACCCAA-GATATCCTTAGG
*
119093 TCCGTAGGGTTACCTTAA
62 TCCGTAGGGTTACCTTAT
* * *
119111 GCACACAGCTAAGGGAACCAACCTAAAGATATACCTTGGGCCTACCCAAGATATCCTTAGGTCCG
1 GCACACAGCAAAGGGAACCAACCTAAGGATATACCTTGGACCTACCCAAGATATCCTTAGGTCCG
*
119176 TAGGGTTATCTTAT
66 TAGGGTTACCTTAT
119190 GCACACAGCAAAGGGAACCAACCTAAGGATATACCTTAGGACCTACCCAAGATATCCTTAGGTCC
1 GCACACAGCAAAGGGAACCAACCTAAGGATATACCTT-GGACCTACCCAAGATATCCTTAGGTCC
*
119255 ATAGGGTTACCTTAT
65 GTAGGGTTACCTTAT
* * * *
119270 GCACACAGCAAAGGGAATCAACCTGAGGATATACCTTGGGGCCTACCCAAGATATCCTTAGGTTC
1 GCACACAGCAAAGGGAACCAACCTAAGGATATACCTT-GGACCTACCCAAGATATCCTTAGGTCC
119335 GTA
65 GTA
119338 AGGACTTATA
Statistics
Matches: 205, Mismatches: 21, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
79 60 0.29
80 134 0.65
81 2 0.01
83 9 0.04
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.21
Consensus pattern (79 bp):
GCACACAGCAAAGGGAACCAACCTAAGGATATACCTTGGACCTACCCAAGATATCCTTAGGTCCG
TAGGGTTACCTTAT
Found at i:120884 original size:26 final size:26
Alignment explanation
Indices: 120855--120911 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
120845 TTTATTTCAT
120855 TCATTTCAGAGCTCTAGGATATCCAA
1 TCATTTCAGAGCTCTAGGATATCCAA
*
120881 TCATTTCAGAGGTCTAGGATATCCAA
1 TCATTTCAGAGCTCTAGGATATCCAA
120907 TCATT
1 TCATT
120912 CCTGAGCTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (26 bp):
TCATTTCAGAGCTCTAGGATATCCAA
Found at i:120928 original size:26 final size:26
Alignment explanation
Indices: 120855--120919 Score: 94
Period size: 26 Copynumber: 2.5 Consensus size: 26
120845 TTTATTTCAT
*
120855 TCATTTCAGAGCTCTAGGATATCCAA
1 TCATTCCAGAGCTCTAGGATATCCAA
* *
120881 TCATTTCAGAGGTCTAGGATATCCAA
1 TCATTCCAGAGCTCTAGGATATCCAA
*
120907 TCATTCCTGAGCT
1 TCATTCCAGAGCT
120920 TGGTGATATT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (26 bp):
TCATTCCAGAGCTCTAGGATATCCAA
Found at i:121509 original size:151 final size:152
Alignment explanation
Indices: 121235--121517 Score: 559
Period size: 151 Copynumber: 1.9 Consensus size: 152
121225 ATACTCAAAG
121235 TACTTTCTCATTCAGGGTCAACTCAAACTATTTTACCTCTCAAGGGCATTTTCGTAATTTCTTAA
1 TACTTTCTCATTCAGGGTCAACTCAAACTATTTTACCTCTCAAGGGCATTTTCGTAATTTCTTAA
121300 CCAGATAATTTTGATATTAGTTCTTAACGAAAATAATTATAATTTAAAGATCCTATGGTC-ATTG
66 CCAGATAATTTTGATATTAGTTCTTAACGAAAATAATTATAATTTAAAGATCCTATGGTCAATTG
121364 TTTTCCCGAACATCTCTGATCT
131 TTTTCCCGAACATCTCTGATCT
121386 TACTTTCTCATTCAGGGTCAACTCAAACTATTTTACCTCTCAAGGGCATTTTCGTAATTTCTTAA
1 TACTTTCTCATTCAGGGTCAACTCAAACTATTTTACCTCTCAAGGGCATTTTCGTAATTTCTTAA
121451 CCAGATAATTTTGATATTAGTTCTTAACGAAAATAATTATAATTTAAAGATCCTATGGTCAATTG
66 CCAGATAATTTTGATATTAGTTCTTAACGAAAATAATTATAATTTAAAGATCCTATGGTCAATTG
121516 TT
131 TT
121518 ATATCAAATC
Statistics
Matches: 131, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
151 125 0.95
152 6 0.05
ACGTcount: A:0.31, C:0.18, G:0.11, T:0.40
Consensus pattern (152 bp):
TACTTTCTCATTCAGGGTCAACTCAAACTATTTTACCTCTCAAGGGCATTTTCGTAATTTCTTAA
CCAGATAATTTTGATATTAGTTCTTAACGAAAATAATTATAATTTAAAGATCCTATGGTCAATTG
TTTTCCCGAACATCTCTGATCT
Found at i:124459 original size:18 final size:18
Alignment explanation
Indices: 124436--124486 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 18
124426 CCCACTATCT
124436 ATAAATAAATTTCACTTA
1 ATAAATAAATTTCACTTA
124454 ATAAATCAATAAATTTCACTTA
1 AT--A--AATAAATTTCACTTA
124476 ATAAATAAATT
1 ATAAATAAATT
124487 GAGATTTAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
18 10 0.34
20 2 0.07
22 17 0.59
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (18 bp):
ATAAATAAATTTCACTTA
Found at i:124464 original size:22 final size:22
Alignment explanation
Indices: 124439--124481 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
124429 ACTATCTATA
124439 AATAAATTTCACTTAATAAATC
1 AATAAATTTCACTTAATAAATC
124461 AATAAATTTCACTTAATAAAT
1 AATAAATTTCACTTAATAAAT
124482 AAATTGAGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (22 bp):
AATAAATTTCACTTAATAAATC
Found at i:128211 original size:20 final size:21
Alignment explanation
Indices: 128178--128217 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
128168 TTTTAACGTA
128178 ATTGATATTCATTTT-AAACC
1 ATTGATATTCATTTTCAAACC
128198 ATTGATA-TCAATTTTCAAAC
1 ATTGATATTC-ATTTTCAAAC
128218 AATTTGATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.11
20 12 0.67
21 4 0.22
ACGTcount: A:0.38, C:0.15, G:0.05, T:0.42
Consensus pattern (21 bp):
ATTGATATTCATTTTCAAACC
Found at i:128225 original size:22 final size:20
Alignment explanation
Indices: 128177--128221 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
128167 ATTTTAACGT
128177 AATTGATATTCATTTTAAAC
1 AATTGATATTCATTTTAAAC
*
128197 CATTGATA-TCAATTTTCAAAC
1 AATTGATATTC-ATTTT-AAAC
128218 AATT
1 AATT
128222 TGATTTTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
19 2 0.10
20 12 0.57
21 7 0.33
ACGTcount: A:0.40, C:0.13, G:0.04, T:0.42
Consensus pattern (20 bp):
AATTGATATTCATTTTAAAC
Found at i:131554 original size:20 final size:19
Alignment explanation
Indices: 131527--131588 Score: 70
Period size: 21 Copynumber: 3.1 Consensus size: 19
131517 CATTTTGGTG
131527 CAGAGGGAATCGATCCCCC
1 CAGAGGGAATCGATCCCCC
*
131546 CATGAGGGAACCGATTCCCCC
1 CA-GAGGGAATCGA-TCCCCC
*
131567 CACAGGGGAATCGATACCCCC
1 CAGA-GGGAATCGAT-CCCCC
131588 C
1 C
131589 TGGGGTTCTG
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
19 2 0.06
20 12 0.33
21 22 0.61
ACGTcount: A:0.26, C:0.39, G:0.24, T:0.11
Consensus pattern (19 bp):
CAGAGGGAATCGATCCCCC
Found at i:131566 original size:21 final size:20
Alignment explanation
Indices: 131529--131568 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
131519 TTTTGGTGCA
*
131529 GAGGGAATCGATCCCCCCAT
1 GAGGGAACCGATCCCCCCAT
131549 GAGGGAACCGATTCCCCCCA
1 GAGGGAACCGA-TCCCCCCA
131569 CAGGGGAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.25, C:0.38, G:0.25, T:0.12
Consensus pattern (20 bp):
GAGGGAACCGATCCCCCCAT
Found at i:143768 original size:43 final size:43
Alignment explanation
Indices: 143717--143800 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
143707 AGAAATGACC
* * *
143717 ATGATTTTCTACACGGTGCACTAATATTTCTTAAAATGATTTT
1 ATGATTTTCCACACGGTGAACTAATATTTCTTAAAACGATTTT
* *
143760 ATGATTTTCCACGCGGTGAATTAATATTTCTTAAAACGATT
1 ATGATTTTCCACACGGTGAACTAATATTTCTTAAAACGATT
143801 GTATTAGATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.42
Consensus pattern (43 bp):
ATGATTTTCCACACGGTGAACTAATATTTCTTAAAACGATTTT
Found at i:146136 original size:16 final size:16
Alignment explanation
Indices: 146112--146147 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
146102 TTTGTTATAA
* *
146112 TATTTTTTATTATGCT
1 TATTATTTATTATGAT
146128 TATTATTTATTATGAT
1 TATTATTTATTATGAT
146144 TATT
1 TATT
146148 TGAAAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.25, C:0.03, G:0.06, T:0.67
Consensus pattern (16 bp):
TATTATTTATTATGAT
Found at i:149609 original size:35 final size:34
Alignment explanation
Indices: 149524--149610 Score: 90
Period size: 35 Copynumber: 2.5 Consensus size: 34
149514 AATATAATTT
*
149524 TAAATACAACAAACTTACAATAAGTATTAAATGG
1 TAAATACAACAAAATTACAATAAGTATTAAATGG
*
149558 TAAATGATAA-ACAAATTACAATAACTGATATTAAATGG
1 TAAAT-ACAACA-AAATTACAATAA--G-TATTAAATGG
149596 T-AATA-AACAAAATTA
1 TAAATACAACAAAATTA
149611 ACCAAAATAC
Statistics
Matches: 45, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
34 6 0.13
35 22 0.49
36 2 0.04
37 4 0.09
38 11 0.24
ACGTcount: A:0.55, C:0.09, G:0.08, T:0.28
Consensus pattern (34 bp):
TAAATACAACAAAATTACAATAAGTATTAAATGG
Found at i:149680 original size:33 final size:33
Alignment explanation
Indices: 149605--149688 Score: 107
Period size: 33 Copynumber: 2.5 Consensus size: 33
149595 GTAATAAACA
*
149605 AAATTAACCAAAATACATTAACAAAAAATCCAAC
1 AAATTAA-CAAAATAAATTAACAAAAAATCCAAC
*
149639 AAATTTAACAAAATAAATTAA-AATAAATCCAACC
1 AAA-TTAACAAAATAAATTAACAAAAAATCCAA-C
*
149673 AAATTAACGAAATAAA
1 AAATTAACAAAATAAA
149689 GTAAGTATTA
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
33 22 0.49
34 19 0.42
35 4 0.09
ACGTcount: A:0.63, C:0.15, G:0.01, T:0.20
Consensus pattern (33 bp):
AAATTAACAAAATAAATTAACAAAAAATCCAAC
Found at i:150871 original size:24 final size:24
Alignment explanation
Indices: 150839--150888 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
150829 ATAATTTTTT
150839 TATCAAAATAATAATCTAATTATA
1 TATCAAAATAATAATCTAATTATA
150863 TATCAAAATAATAATCTAATTATA
1 TATCAAAATAATAATCTAATTATA
150887 TA
1 TA
150889 ACTATAATCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (24 bp):
TATCAAAATAATAATCTAATTATA
Found at i:152016 original size:25 final size:26
Alignment explanation
Indices: 151981--152036 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
151971 TATATCTGTA
* *
151981 AAAAAAATTAATTAAATAAA-ATATT
1 AAAAAAATTAAATAAATAAATAAATT
* *
152006 AAAAAATTTAAATAATTAAATAAATT
1 AAAAAAATTAAATAAATAAATAAATT
152032 AAAAA
1 AAAAA
152037 TAAAATATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 17 0.65
26 9 0.35
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (26 bp):
AAAAAAATTAAATAAATAAATAAATT
Found at i:152017 original size:17 final size:18
Alignment explanation
Indices: 151997--152038 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
151987 ATTAATTAAA
151997 TAAAATATTAAA-AAATT
1 TAAAATATTAAATAAATT
152014 T-AAATAATTAAATAAATT
1 TAAAAT-ATTAAATAAATT
*
152032 AAAAATA
1 TAAAATA
152039 AAATATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
16 4 0.19
17 7 0.33
18 6 0.29
19 4 0.19
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
TAAAATATTAAATAAATT
Found at i:152030 original size:33 final size:33
Alignment explanation
Indices: 151986--152060 Score: 82
Period size: 33 Copynumber: 2.3 Consensus size: 33
151976 CTGTAAAAAA
* *
151986 AATTAATTAAA-TAAAATATTAAAAAATTTAA-AT
1 AATTAAATAAATTAAAA-A-TAAAAAATTAAATAT
*
152019 AATTAAATAAATTAAAAATAAAATATTAAATAT
1 AATTAAATAAATTAAAAATAAAAAATTAAATAT
*
152052 AATAAAATA
1 AATTAAATA
152061 TACATTAACT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
32 10 0.28
33 21 0.58
34 5 0.14
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (33 bp):
AATTAAATAAATTAAAAATAAAAAATTAAATAT
Found at i:152042 original size:24 final size:24
Alignment explanation
Indices: 151979--152058 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 24
151969 TTTATATCTG
*
151979 TAAAAA-AAATTAATTAAATAAAATAT
1 TAAAAATAAAATAATTAAAT--AA-AT
*
152005 TAAAAAATTTAAATAATTAAATAAAT
1 T-AAAAA-TAAAATAATTAAATAAAT
152031 TAAAAATAAAAT-ATTAAATATAA-
1 TAAAAATAAAATAATTAAATA-AAT
152054 TAAAA
1 TAAAA
152059 TATACATTAA
Statistics
Matches: 47, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
23 13 0.28
24 7 0.15
25 5 0.11
26 4 0.09
27 7 0.15
29 11 0.23
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (24 bp):
TAAAAATAAAATAATTAAATAAAT
Found at i:153901 original size:59 final size:60
Alignment explanation
Indices: 153795--153911 Score: 155
Period size: 59 Copynumber: 2.0 Consensus size: 60
153785 CATTTGACAC
* * * * *
153795 GATGTCTTCAAATTCTAAGGGGAGGCATTCAACTGCGAGATTCTTCGACCTCAATGTCGA
1 GATGCCTTCAAATTCTAAGGGAAGGCATTCAACTACCAGATTCTTCGACCTAAATGTCGA
* * *
153855 GATGCCTTCAAGTTC-AAGGGAAGGCATTCAACTACCAGCTTGTTCGACCTAAATGTC
1 GATGCCTTCAAATTCTAAGGGAAGGCATTCAACTACCAGATTCTTCGACCTAAATGTC
153912 AACACCATGG
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
59 36 0.73
60 13 0.27
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Consensus pattern (60 bp):
GATGCCTTCAAATTCTAAGGGAAGGCATTCAACTACCAGATTCTTCGACCTAAATGTCGA
Done.