genome.fa.s2693.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002693.1 Hibiscus syriacus cultivar Beakdansim tig00005561_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122161

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7--88	34	2.3	36	85	6	105	47	2	3	46	1.33
122--165	10	4.6	10	83	11	56	22	2	0	75	0.92
6622--7202	165	3.5	165	89	1	788	30	24	20	24	1.99
6574--7367	249	3.2	245	83	4	894	30	24	20	24	1.99
6622--7402	165	4.7	161	85	4	767	30	24	20	24	1.99
7726--7778	2	26.5	2	100	0	106	49	0	0	50	1.00
7761--7950	37	5.2	37	78	11	151	47	2	4	45	1.36
7759--7950	36	5.2	36	77	10	185	47	2	4	45	1.35
7839--8132	36	8.5	34	68	19	137	46	3	3	45	1.38
8020--8076	29	2.0	29	89	0	87	47	5	3	43	1.43
8049--8145	36	2.6	38	79	8	110	44	3	4	48	1.37
8179--8222	23	1.9	23	85	0	61	22	2	0	75	0.92
9442--9475	17	1.9	17	94	5	59	20	0	0	79	0.73
12772--12806	17	2.0	17	88	5	52	37	37	5	20	1.76
14519--14551	10	3.3	10	95	0	57	6	3	39	51	1.42
14945--14986	2	21.0	2	100	0	84	50	0	0	50	1.00
14910--14985	16	5.2	15	76	19	63	60	0	0	39	0.97
15013--15061	16	3.0	16	79	11	55	48	8	0	42	1.32
15014--15054	15	2.7	15	88	3	55	48	7	0	43	1.30
15144--15168	12	2.1	12	100	0	50	44	8	8	40	1.63
15045--15256	37	5.7	37	83	10	181	44	7	3	43	1.50
15242--15280	2	19.5	2	100	0	78	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20507--20591	23	3.7	23	79	0	89	17	23	23	35	1.95
20507--20603	46	2.1	46	86	3	133	18	22	23	35	1.96
24900--24959	21	3.0	21	76	14	72	31	30	21	16	1.96
29704--29751	21	2.3	21	96	0	87	18	22	35	22	1.96
29704--29761	21	2.8	21	86	5	73	20	25	31	22	1.98
29861--29891	16	1.9	16	100	0	62	51	25	9	12	1.70
30888--30968	7	11.6	7	82	0	54	23	1	30	44	1.61
31038--31138	7	14.7	7	76	4	98	19	0	35	43	1.58
31062--31138	20	3.8	21	80	11	97	18	0	35	46	1.49
31061--31135	27	2.8	27	85	4	107	18	0	34	46	1.49
31296--31336	14	3.1	14	76	20	52	41	0	4	53	1.22
34656--34745	46	2.0	46	93	0	153	36	12	17	33	1.87
34963--35021	29	2.0	29	100	0	118	23	13	13	49	1.78
39648--39706	29	2.0	29	93	0	100	23	11	11	52	1.71
49531--49606	24	3.2	24	84	3	73	44	19	11	23	1.84
49548--49663	24	4.8	24	89	4	180	39	18	15	25	1.91
49579--49681	48	2.1	48	85	7	138	41	18	15	24	1.89
51743--51768	13	2.0	13	100	0	52	15	23	46	15	1.83
51727--51790	31	2.2	27	86	10	83	18	21	40	18	1.91
51749--51792	18	2.4	18	80	0	61	13	20	47	18	1.82
54637--54693	29	2.0	29	92	0	96	15	28	38	17	1.91
54720--54752	14	2.4	14	94	0	57	6	30	39	24	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54739--54792	20	2.7	20	97	0	99	9	27	37	25	1.87
54779--54806	14	2.0	14	100	0	56	7	28	42	21	1.79
54739--54792	10	5.4	10	79	16	67	9	27	37	25	1.87
56543--57118	265	2.2	255	87	8	830	29	11	17	41	1.85
58079--58126	24	2.0	25	95	4	89	31	12	16	39	1.86
58079--58146	24	2.8	24	86	4	73	27	14	17	39	1.89
61649--61723	35	2.1	35	82	4	89	25	10	22	41	1.86
62321--62379	29	2.0	29	100	0	118	42	16	20	20	1.89
67553--67595	21	2.0	21	81	4	50	27	11	23	37	1.89
67582--67665	44	1.9	44	85	0	114	26	10	20	42	1.84
68349--68394	23	2.0	23	100	0	92	21	21	13	43	1.86
70895--70938	21	2.0	21	82	4	52	27	13	22	36	1.92
70947--71020	23	3.3	23	66	27	68	27	9	18	44	1.81
70925--71044	44	2.8	44	94	1	206	28	10	20	40	1.85
85105--85136	12	2.7	12	95	0	55	15	21	21	40	1.91
95498--95526	15	2.0	15	93	6	51	65	0	27	6	1.18
96435--96527	30	3.1	30	80	0	105	13	16	9	60	1.59
96613--96656	22	2.0	21	91	4	70	29	0	11	59	1.32
103644--103706	29	2.2	29	97	2	119	28	12	9	49	1.72
108323--108382	29	2.1	28	96	3	111	28	13	10	48	1.74
109051--109099	22	2.2	22	100	0	98	46	14	26	12	1.79
112489--112521	8	4.1	8	96	0	57	33	12	15	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113640--113696	29	2.0	29	82	6	71	38	10	3	47	1.55

Tables:   1

The End!