genome.fa.s2694.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002694.1 Hibiscus syriacus cultivar Beakdansim tig00005566_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  187373

Tables:   1   

This is table  1  of  1  ( 106 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2384--2673	141	2.0	140	85	9	392	26	15	21	36	1.93
3488--3529	2	22.5	2	86	13	63	52	0	0	47	1.00
3489--3528	13	3.0	13	96	3	71	55	0	0	45	0.99
7267--7387	64	1.9	63	87	1	179	34	22	18	24	1.96
9104--9136	17	1.9	17	93	0	57	48	3	15	33	1.60
10498--10658	65	2.5	65	83	7	204	29	19	20	31	1.97
23081--23205	64	1.9	65	87	4	182	28	19	19	33	1.96
34495--34560	33	2.0	33	100	0	132	27	24	27	21	1.99
36999--37028	15	2.0	15	100	0	60	13	26	46	13	1.80
45369--45441	26	2.8	26	93	0	119	58	9	9	21	1.58
49671--49746	39	1.9	39	89	5	118	53	5	15	25	1.62
51214--51391	57	3.0	58	70	15	150	34	19	3	42	1.69
51516--51627	60	1.9	59	81	5	136	42	2	18	35	1.65
51782--51835	18	3.1	18	77	22	69	33	5	0	61	1.19
64008--64050	20	2.2	20	83	8	52	67	4	2	25	1.22
64212--64332	30	4.1	29	81	4	143	58	9	13	18	1.62
64215--64332	60	2.0	60	91	1	193	59	9	13	17	1.60
65853--65916	3	21.3	3	84	6	76	64	6	0	29	1.18
66108--66739	137	4.7	134	82	5	631	25	18	30	25	1.98
66735--66791	29	1.9	30	85	3	80	36	15	21	26	1.93
66836--66972	67	2.1	67	84	11	191	40	13	14	32	1.84
67746--67809	27	2.4	27	89	0	101	42	10	25	21	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72053--72099	18	2.5	19	83	12	62	4	10	6	78	1.06
72051--72119	25	2.8	24	72	8	68	2	14	7	75	1.13
73659--73801	42	3.4	41	78	15	159	35	18	20	25	1.95
73661--73816	83	1.9	83	86	5	226	35	17	21	25	1.95
73680--73822	42	3.5	40	76	17	150	34	16	19	29	1.94
73836--73986	41	3.7	40	85	5	198	35	14	17	33	1.90
73809--73988	41	4.4	41	81	7	188	34	14	16	34	1.89
73809--73988	82	2.2	81	85	5	238	34	14	16	34	1.89
75094--75197	41	2.5	42	84	1	129	25	16	20	38	1.92
81469--81519	21	2.4	21	93	0	84	43	23	33	0	1.54
81932--82300	43	8.6	43	80	5	147	34	25	14	25	1.94
81917--82306	86	4.5	85	78	8	344	33	24	15	26	1.95
81975--82306	43	7.7	43	81	6	334	33	25	15	26	1.95
81917--82313	129	3.1	128	77	5	401	32	24	15	27	1.95
84771--84874	20	4.9	20	78	10	100	17	24	29	28	1.97
88530--88573	23	1.9	23	95	0	79	22	29	22	25	1.99
88618--88666	24	1.9	25	88	12	73	57	20	10	12	1.64
88647--88679	17	2.0	17	88	5	50	60	15	12	12	1.59
90119--90160	22	2.0	22	85	4	59	40	16	16	26	1.90
93150--93255	45	2.4	45	93	4	180	32	8	18	40	1.81
99173--99398	103	2.2	103	92	1	382	26	14	23	36	1.93
99397--99516	47	2.6	47	89	1	188	25	22	21	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99397--99521	23	5.3	23	74	2	115	26	21	21	30	1.98
104242--104290	22	2.2	22	82	7	64	32	30	28	8	1.86
104986--105203	103	2.1	103	97	0	409	25	13	23	36	1.92
105210--105329	47	2.6	47	95	1	215	23	23	23	30	1.99
105210--105334	23	5.3	23	78	2	133	24	22	23	30	1.99
107811--107850	20	2.0	20	95	0	71	22	35	25	17	1.95
107740--107863	64	1.9	65	88	3	187	33	25	21	20	1.97
113551--113586	17	2.1	17	89	0	54	22	22	11	44	1.84
116254--116372	30	4.0	30	83	1	141	59	10	12	17	1.60
117202--117244	12	3.3	12	78	15	50	2	18	0	79	0.85
122805--122866	5	12.4	5	94	0	70	24	32	40	3	1.71
122833--122877	5	9.4	5	95	2	58	31	26	42	0	1.56
136013--136074	23	2.7	23	87	0	79	40	4	19	35	1.73
136120--136183	23	2.8	23	85	2	85	37	6	17	39	1.75
136013--136261	109	2.3	110	90	1	383	40	9	14	34	1.79
136111--136174	23	2.9	22	83	2	83	32	7	15	43	1.76
136133--136363	87	2.7	87	90	0	363	44	9	13	32	1.77
136211--136260	23	2.2	23	85	0	64	40	8	18	34	1.79
136220--136267	23	2.1	23	88	0	69	41	6	18	33	1.76
136298--136347	23	2.2	23	85	0	64	46	12	10	32	1.74
136662--136706	14	3.1	14	81	15	56	42	0	2	55	1.12
136634--136757	28	4.7	28	69	20	81	46	0	2	50	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137370--137438	24	2.9	25	79	18	76	52	2	1	43	1.25
137651--138319	198	3.4	198	89	4	956	38	13	16	31	1.87
138332--138570	87	2.7	87	87	0	352	33	13	9	42	1.77
138406--138457	23	2.3	23	79	0	59	36	23	5	34	1.79
138500--138553	23	2.4	22	81	9	72	38	12	5	42	1.67
139512--139562	19	2.6	20	90	3	77	43	23	17	15	1.88
139512--139789	20	13.6	20	75	8	139	38	19	23	17	1.93
139656--139779	63	2.0	63	90	0	194	35	17	28	18	1.94
139616--139789	83	2.1	83	89	0	258	35	18	26	19	1.95
139637--139787	40	3.7	40	83	5	185	35	17	26	19	1.95
139879--139930	15	3.3	15	86	5	68	28	50	21	0	1.49
139881--139925	5	8.6	5	92	2	63	26	53	20	0	1.46
140615--140735	6	20.5	6	89	9	155	2	16	47	33	1.60
140774--140822	19	2.5	20	90	3	73	16	16	22	44	1.86
148292--148332	17	2.4	17	95	0	73	12	36	26	24	1.91
154817--154950	6	22.0	6	68	23	52	30	8	0	60	1.31
154817--154950	9	14.7	9	67	26	52	30	8	0	60	1.31
154823--154882	19	3.0	19	78	9	66	38	3	1	56	1.26
154819--154881	17	3.5	17	81	16	65	38	1	1	58	1.17
154825--154881	15	3.7	14	80	17	60	38	1	1	57	1.19
155051--155097	17	2.8	17	80	6	51	17	2	2	78	0.94
157115--157175	23	2.7	23	84	0	86	24	26	29	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157191--157405	103	2.1	104	93	1	369	36	22	13	26	1.92
159089--159133	21	2.1	21	87	0	63	15	24	28	31	1.96
160807--162043	312	4.0	312	98	0	2366	40	19	13	26	1.88
165981--166059	36	2.2	36	88	0	113	29	16	13	40	1.87
165997--166071	36	2.1	36	87	0	105	30	12	13	44	1.80
166206--166386	65	2.8	65	88	4	258	29	20	13	37	1.90
166337--166423	37	2.4	37	90	1	131	25	21	13	39	1.90
166287--166492	102	2.0	102	94	0	358	31	20	12	35	1.90
166167--166662	167	2.9	167	81	5	500	30	19	11	37	1.88
166373--166555	65	2.8	65	86	4	235	30	20	10	38	1.86
166439--166588	36	4.4	36	72	15	156	26	20	11	41	1.86
168080--168117	18	2.1	19	85	14	53	23	10	0	65	1.23
168139--168165	8	3.4	8	100	0	54	37	0	11	51	1.37
168233--168278	13	3.6	13	83	11	60	19	2	0	78	0.86
168247--168285	20	2.0	20	85	10	53	25	5	0	69	1.09
169327--169367	6	6.8	6	100	0	82	34	34	0	31	1.58
170344--170378	12	3.0	12	87	8	54	62	8	8	20	1.49
181055--181159	29	3.6	29	84	1	120	47	18	1	32	1.59

Tables:   1

The End!