genome.fa.s2696.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002696.1 Hibiscus syriacus cultivar Beakdansim tig00005570_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  236398

Tables:   1   

This is table  1  of  1  ( 109 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5455--5573	47	2.5	46	77	6	114	18	36	25	19	1.94
5689--5723	10	3.5	10	85	14	54	34	25	0	40	1.56
5851--6174	107	3.0	109	90	4	514	37	8	9	44	1.67
8315--8441	50	2.5	50	80	3	139	19	26	35	18	1.95
13026--13076	3	16.0	3	95	4	75	68	0	0	31	0.90
13057--13100	4	11.2	4	95	4	81	75	0	0	25	0.81
13030--13100	12	5.1	15	93	6	91	71	0	0	28	0.86
13452--13493	2	21.0	2	100	0	84	50	0	0	50	1.00
19371--19700	170	2.0	167	96	1	606	24	17	16	41	1.90
36328--36377	20	2.5	20	90	0	73	42	4	14	40	1.64
41461--41597	23	6.0	23	80	10	163	22	26	0	50	1.54
41461--41590	69	1.9	69	87	6	192	23	26	0	50	1.55
41661--41717	2	28.5	2	100	0	114	50	0	0	49	1.00
44848--44873	5	5.2	5	100	0	52	19	57	23	0	1.40
44809--44895	13	6.3	13	77	9	75	17	44	20	17	1.86
44868--44916	8	6.1	8	84	15	66	14	34	26	24	1.94
49946--49971	5	5.2	5	100	0	52	19	57	23	0	1.40
49907--49993	13	6.3	13	77	9	75	17	44	20	17	1.86
49966--50014	8	6.1	8	84	15	66	14	34	26	24	1.94
53617--53655	13	3.0	13	92	0	60	25	15	41	17	1.89
55672--55759	32	2.8	31	75	5	79	19	28	28	23	1.98
61943--62041	10	10.3	9	79	12	90	15	28	27	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61944--62041	19	5.1	19	79	16	87	14	28	27	29	1.95
61942--62016	29	2.5	30	89	8	118	17	26	26	29	1.97
61943--62041	29	3.4	28	84	8	101	15	28	27	29	1.96
62055--62095	5	7.8	5	84	10	55	19	53	21	4	1.63
62038--62102	22	3.0	22	97	0	121	18	47	23	10	1.79
62092--62122	7	4.4	7	100	0	62	16	29	29	25	1.96
62991--63114	63	2.0	63	82	6	153	16	28	29	25	1.97
70507--70540	18	1.9	18	88	5	52	14	11	2	70	1.27
78504--78575	24	3.0	24	89	0	117	50	18	15	16	1.79
78506--78575	12	5.8	12	76	6	70	50	18	15	15	1.79
78504--78598	24	4.0	24	84	2	111	48	16	14	20	1.81
78504--78612	48	2.3	48	84	6	132	47	16	16	19	1.83
81069--81108	7	5.4	7	88	11	62	25	25	35	15	1.94
81059--81107	8	6.1	8	86	13	66	26	24	34	14	1.94
81059--81108	15	3.2	15	94	5	82	26	24	34	16	1.95
88150--88181	16	2.0	16	100	0	64	56	12	0	31	1.37
97740--97772	16	2.1	16	94	0	57	33	21	12	33	1.90
99115--99176	32	1.9	32	84	12	83	35	6	12	45	1.68
101514--101544	10	2.9	11	95	4	55	19	29	32	19	1.96
101844--101869	6	4.3	6	100	0	52	69	15	0	15	1.20
107068--107168	42	2.4	41	80	3	121	30	20	22	25	1.98
107282--107382	42	2.4	41	80	3	112	30	21	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107696--107795	42	2.4	41	80	3	119	30	22	23	25	1.99
106680--108173	214	7.2	207	91	2	2285	32	19	15	31	1.93
107996--108334	179	1.9	178	96	0	633	32	18	15	33	1.93
108320--108589	36	7.4	36	84	6	323	22	17	22	37	1.94
109298--109619	126	2.6	124	89	3	493	23	26	17	32	1.96
110514--110589	40	1.9	39	86	2	107	25	17	18	39	1.91
113290--113405	55	2.1	55	90	0	178	20	23	13	42	1.88
118187--118349	37	4.5	36	81	7	116	41	4	7	47	1.51
118185--118349	35	4.6	36	81	7	129	41	4	7	47	1.51
118226--118356	38	3.6	35	83	7	147	42	4	5	47	1.46
118401--118450	22	2.3	22	82	3	57	22	6	2	70	1.20
119560--119599	9	4.3	9	90	6	62	22	0	0	77	0.77
119567--119599	5	7.0	5	86	13	52	21	0	0	78	0.75
119560--119599	14	2.9	14	82	14	55	22	0	0	77	0.77
119609--119669	2	31.0	2	96	3	115	49	0	0	50	1.00
119903--119978	22	3.5	21	74	16	57	11	3	5	78	1.04
119920--119978	22	2.7	22	80	15	68	13	1	5	79	0.97
119946--120006	17	3.5	17	72	16	61	19	6	0	73	1.04
137388--137439	17	3.2	17	75	10	54	32	1	13	51	1.52
145948--145980	13	2.3	15	90	10	52	33	0	3	63	1.10
154485--154557	22	3.3	22	94	0	119	30	26	27	16	1.97
154493--154559	22	3.0	22	97	0	125	26	26	28	17	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155198--155348	67	2.3	66	88	2	212	18	28	27	25	1.98
155328--155370	21	2.0	21	86	0	59	16	25	27	30	1.97
155199--155370	67	2.6	66	85	5	195	18	28	26	26	1.98
161393--161465	22	3.3	22	94	0	119	30	26	27	16	1.97
161401--161467	22	3.0	22	97	0	125	26	26	28	17	1.98
162106--162254	67	2.2	66	89	1	217	18	28	26	26	1.98
162234--162276	21	2.0	21	86	0	59	16	25	27	30	1.97
162106--162276	67	2.6	66	85	4	202	18	28	26	26	1.98
166152--166212	11	5.5	11	80	3	59	26	21	19	32	1.97
168218--168538	167	1.9	170	88	5	488	29	10	20	39	1.86
168218--168547	174	1.9	170	86	9	470	29	10	20	39	1.85
168507--168557	21	2.4	21	90	0	75	21	0	31	47	1.51
168507--168557	7	7.3	7	81	0	57	21	0	31	47	1.51
168599--168666	11	6.3	11	70	14	52	38	1	2	57	1.23
172373--172438	30	2.2	30	83	0	78	33	22	33	10	1.89
182014--182046	2	16.5	2	100	0	66	48	0	0	51	1.00
186760--186864	20	5.2	20	82	3	131	47	23	17	11	1.80
186760--186864	41	2.6	40	88	4	158	47	23	17	11	1.80
187224--187288	22	3.0	22	77	4	62	21	13	41	23	1.89
187436--187481	20	2.3	20	100	0	92	15	15	26	43	1.85
187475--187541	20	3.3	20	93	0	107	19	20	22	37	1.95
187455--187546	40	2.3	39	75	12	96	18	18	22	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187453--187561	40	2.7	39	73	8	94	20	17	24	37	1.93
191668--191758	41	2.2	41	100	0	182	38	19	7	34	1.81
199270--199302	13	2.3	15	90	10	52	33	0	3	63	1.10
207806--207878	22	3.3	22	94	0	119	30	26	27	16	1.97
207814--207880	22	3.0	22	97	0	125	26	26	28	17	1.98
208519--208667	66	2.3	66	90	0	226	18	28	26	26	1.98
208647--208689	21	2.0	21	86	0	59	16	25	27	30	1.97
214711--214783	22	3.3	22	94	0	119	30	26	27	16	1.97
214719--214785	22	3.0	22	97	0	125	26	26	28	17	1.98
215424--215573	67	2.3	66	89	1	219	18	28	27	26	1.98
215553--215595	21	2.0	21	86	0	59	16	25	27	30	1.97
215425--215595	67	2.6	66	85	4	202	18	28	26	26	1.98
219470--219530	11	5.5	11	80	3	59	26	21	19	32	1.97
221533--221853	167	1.9	170	88	5	488	29	10	20	39	1.86
221533--221862	174	1.9	170	86	9	470	29	10	20	39	1.85
221822--221872	21	2.4	21	90	0	75	21	0	31	47	1.51
221822--221872	7	7.3	7	81	0	57	21	0	31	47	1.51
221914--221981	11	6.3	11	70	14	52	38	1	2	57	1.23
225684--225749	30	2.2	30	83	0	78	33	22	33	10	1.89
235268--235300	2	17.5	2	87	12	52	51	0	0	48	1.00
235268--235297	13	2.3	13	100	0	60	53	0	0	46	1.00

Tables:   1

The End!