Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002697.1 Hibiscus syriacus cultivar Beakdansim tig00005571_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80713

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4245--4624
182
2.1
181
90
5
603
46
8
3
42
1.49
4954--5016
21
3.0
21
77
9
65
26
22
20
30
1.98
6220--6280
25
2.4
25
100
0
122
18
27
0
54
1.44
12898--12939
18
2.3
18
100
0
84
11
16
33
38
1.86
19802--20263
230
2.0
230
93
0
789
32
14
20
31
1.93
38493--38599
24
4.5
24
74
0
106
47
16
14
21
1.82
38493--38601
48
2.3
48
78
0
128
47
16
14
21
1.82
41071--41140
18
4.2
18
78
17
96
12
20
50
17
1.78
41075--41135
31
2.0
31
100
0
122
14
19
49
16
1.80
41082--41118
13
2.8
13
91
0
65
13
21
48
16
1.80
43880--43986
24
4.5
24
74
4
99
47
15
14
21
1.82
43880--43988
48
2.3
48
77
3
121
47
15
15
21
1.82
46441--46509
18
4.1
18
78
17
94
13
20
49
17
1.79
46444--46504
31
2.0
31
100
0
122
14
19
49
16
1.80
46451--46487
13
2.8
13
91
0
65
13
21
48
16
1.80
50941--50973
16
2.1
16
88
11
50
39
9
3
48
1.50
51284--51380
42
2.3
41
82
1
113
32
22
21
22
1.98
51001--52009
229
4.4
230
83
4
1166
33
18
16
31
1.94
54521--54617
30
3.2
31
72
11
92
32
18
19
28
1.96
56128--56177
26
1.9
27
84
8
68
40
22
0
38
1.54
57057--57100
11
3.4
13
84
15
56
2
18
0
79
0.83
57053--57112
14
4.2
15
79
18
65
3
16
0
80
0.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57064--57152
11
7.6
11
75
10
61
6
16
0
76
0.99
58620--58671
22
2.5
20
78
9
52
51
11
15
21
1.74
63002--63032
6
5.2
6
100
0
62
83
0
0
16
0.64
64321--64360
3
13.0
3
94
5
71
65
0
0
35
0.93
65522--65681
63
2.5
63
82
6
180
34
18
21
26
1.96
67026--67327
149
2.0
148
92
0
505
26
15
21
36
1.93
67538--67598
21
2.9
21
80
4
61
49
1
18
31
1.57
67540--67605
33
2.0
33
82
5
80
50
1
16
31
1.55
70660--70803
64
2.2
65
83
9
170
35
16
20
27
1.94
73249--73310
3
21.0
3
80
3
54
58
0
0
41
0.98
73255--73304
18
2.8
18
84
6
66
54
0
0
46
1.00
73457--74169
76
9.4
76
97
0
1331
34
22
19
23
1.96
75000--75051
22
2.4
22
86
0
68
36
13
13
36
1.84
77558--77990
114
3.8
115
89
1
654
32
21
15
30
1.95
80019--80055
11
3.4
11
84
0
56
0
5
5
89
0.60
80044--80097
26
2.0
27
96
3
101
3
16
11
68
1.33

Tables:   1

The End!