genome.fa.s2698.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002698.1 Hibiscus syriacus cultivar Beakdansim tig00005573_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  144881

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
824--919	30	3.1	31	93	4	167	18	22	26	32	1.97
830--931	31	3.3	29	89	6	125	17	22	27	32	1.96
824--949	62	2.0	61	83	1	153	18	21	26	34	1.96
4954--5017	31	2.1	31	90	0	101	21	20	25	32	1.97
4972--5071	30	3.3	30	83	2	94	20	22	27	31	1.98
5003--5074	29	2.4	30	86	2	92	18	20	29	31	1.96
5889--6052	65	2.5	64	84	1	220	28	15	25	30	1.96
6003--6049	19	2.5	19	83	10	62	27	17	29	25	1.97
5893--6100	64	3.2	65	80	8	194	28	17	24	30	1.97
11412--11451	21	1.9	21	85	10	55	35	10	2	52	1.48
13392--13555	65	2.5	64	85	1	229	27	15	26	30	1.96
13506--13552	19	2.5	19	83	10	62	25	17	31	25	1.97
13396--13602	65	3.2	62	80	12	204	27	16	24	30	1.97
13769--13808	20	2.0	21	85	14	57	45	7	5	42	1.54
20156--20187	16	2.0	16	93	0	55	50	28	6	15	1.68
21492--21525	2	17.0	2	100	0	68	50	0	0	50	1.00
24261--24285	2	12.5	2	100	0	50	52	0	0	48	1.00
24345--24421	35	2.2	35	81	2	111	35	31	23	10	1.88
24502--24637	24	5.7	24	92	3	202	41	19	13	25	1.89
27124--27182	18	3.6	18	73	21	65	8	22	50	18	1.73
27105--27160	13	4.3	13	95	0	94	10	23	50	16	1.76
31469--31505	14	2.6	14	100	0	74	21	21	8	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32049--32327	138	2.0	138	98	0	540	35	16	18	29	1.93
33147--33264	55	2.1	55	87	0	173	44	17	9	27	1.80
47196--47246	20	2.5	20	96	0	93	39	13	25	21	1.90
54821--54858	2	19.0	2	100	0	76	50	0	0	50	1.00
60721--60753	10	3.4	10	87	8	50	27	0	6	66	1.15
66673--66720	22	2.3	20	83	16	71	33	14	10	41	1.80
66679--66724	22	2.1	22	95	0	83	32	13	13	41	1.82
67439--67716	127	2.2	127	92	0	459	38	14	23	23	1.92
76621--76650	14	2.2	14	94	5	53	60	6	13	20	1.55
77164--77199	17	2.1	17	94	0	63	36	11	25	27	1.90
79978--80511	39	14.2	37	84	8	599	44	2	8	44	1.49
80520--80594	17	4.3	16	76	15	53	18	6	1	73	1.12
80549--80915	183	2.0	183	99	0	725	25	18	19	36	1.94
81624--81654	2	15.5	2	100	0	62	48	0	0	51	1.00
87352--87413	31	2.0	31	83	3	79	40	17	19	22	1.91
87425--87511	32	2.7	32	96	0	156	33	14	18	33	1.92
90274--90316	20	2.2	20	91	0	68	32	13	20	32	1.92
98008--98038	13	2.5	13	94	5	55	16	22	0	61	1.34
100663--100705	20	2.2	20	91	0	68	32	13	20	32	1.92
102177--102241	23	2.8	23	92	0	112	21	29	12	36	1.90
105402--105509	45	2.4	45	95	3	191	32	21	11	35	1.88
108754--108802	19	2.7	17	84	9	53	26	20	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108774--108983	65	3.2	64	79	9	230	26	19	24	30	1.98
110037--110080	21	2.1	21	83	8	54	31	11	45	11	1.76
111093--111131	13	3.1	13	88	3	53	48	2	7	41	1.45
116010--116049	6	7.0	6	97	2	66	30	52	17	0	1.45
116549--116582	5	6.6	5	89	3	50	2	20	52	23	1.60
116724--116989	41	6.5	41	95	1	444	25	21	19	33	1.97
117450--117498	19	2.7	17	84	9	53	26	20	28	24	1.99
117450--117629	65	2.8	65	81	9	217	27	19	24	28	1.99
117579--117627	19	2.6	19	87	9	66	28	16	28	26	1.97
117470--117679	65	3.2	64	79	11	207	26	18	24	30	1.98
120037--120092	24	2.4	24	81	3	69	48	17	21	12	1.80
120589--120631	10	4.2	10	82	14	52	25	2	0	72	0.97
120597--120632	17	2.1	17	94	0	63	25	0	0	75	0.81
120600--120631	14	2.4	13	94	5	55	25	0	0	75	0.81
125745--126393	320	2.0	320	98	0	1253	40	18	17	23	1.90
134856--134911	25	2.2	25	100	0	112	25	19	0	55	1.43
136052--136086	2	17.5	2	100	0	70	51	0	0	48	1.00
137284--137355	31	2.3	32	83	11	96	77	4	1	16	0.99
137314--137353	12	3.2	12	92	3	62	82	5	0	12	0.82
137284--137349	18	3.6	18	77	8	62	78	3	1	16	0.95
137317--137355	13	3.1	13	92	3	62	79	5	0	15	0.90
137408--137633	38	6.2	36	76	10	176	45	5	3	46	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137453--137676	38	6.0	37	75	12	138	42	7	3	46	1.48
137453--137676	76	3.0	73	78	9	170	42	7	3	46	1.48

Tables:   1

The End!