genome.fa.s2699.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002699.1 Hibiscus syriacus cultivar Beakdansim tig00005574_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48826

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1952--1982	16	1.9	16	93	0	53	12	22	35	29	1.91
2267--2311	22	2.0	23	83	12	58	44	4	20	31	1.71
2901--2976	23	3.3	23	75	3	82	34	23	23	18	1.96
8184--8307	38	3.3	38	82	7	121	45	1	9	42	1.46
8206--8332	37	3.3	38	81	11	145	45	3	8	42	1.50
8298--8322	12	2.1	12	100	0	50	40	8	8	44	1.63
8252--8404	37	4.2	36	84	11	172	43	4	7	43	1.53
8476--8530	2	28.0	2	90	3	85	45	0	0	54	0.99
8511--8555	14	3.2	15	82	17	53	31	0	0	68	0.89
13942--13993	8	6.4	8	75	2	50	75	1	0	23	0.91
13946--13993	24	2.0	25	87	4	71	75	2	0	22	0.91
15273--15356	12	6.9	11	73	24	55	73	2	3	20	1.09
15273--15326	24	2.2	25	80	9	67	74	0	1	24	0.92
15422--15478	29	2.0	29	89	0	87	42	5	5	47	1.48
15525--15581	28	1.9	28	86	10	78	43	8	3	43	1.52
15548--15741	36	5.2	38	77	7	184	45	4	2	46	1.37
15724--15801	2	39.5	2	97	2	149	50	0	0	50	1.00
15548--15741	39	5.2	39	78	12	192	45	4	2	46	1.37
16125--16904	84	9.4	83	77	6	717	24	20	24	30	1.98
16160--16904	165	4.5	165	84	3	786	24	20	24	30	1.98
23421--23468	25	1.9	25	87	8	71	72	4	4	18	1.17
23464--23560	36	2.6	37	78	4	106	46	6	3	44	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23533--23588	28	2.0	29	85	3	78	41	5	5	48	1.49
23624--23770	36	4.3	33	71	25	103	44	4	2	49	1.33
23555--23852	34	8.2	36	72	16	215	43	4	4	47	1.41
23835--23879	2	23.0	2	95	4	83	51	0	0	48	1.00
25212--26155	164	5.7	164	87	1	1212	29	24	20	25	1.99
25212--26131	83	11.1	80	75	8	600	29	24	20	25	1.99
25218--26155	329	2.8	328	86	3	1249	29	24	20	24	1.99
26869--26918	26	1.9	26	83	0	64	46	2	6	46	1.39
26735--27062	37	9.1	37	76	16	228	44	3	7	44	1.50
26918--26968	24	2.1	25	92	3	86	43	3	9	43	1.56
26869--27004	61	2.2	62	86	5	186	42	3	7	46	1.49
26830--27041	98	2.1	100	83	6	259	42	4	7	45	1.52
27063--27126	15	4.0	17	76	11	64	43	1	6	48	1.37
27141--27186	2	23.0	2	100	0	92	50	0	0	50	1.00
27152--27226	12	5.9	12	89	6	55	38	0	0	61	0.96
27141--27235	16	5.9	18	86	11	88	40	0	0	60	0.97
27184--27235	3	18.0	3	84	15	74	30	0	0	69	0.89
28773--28802	2	15.0	2	100	0	60	50	0	0	50	1.00
29436--29478	22	2.0	22	90	0	68	23	18	4	53	1.63
31950--31977	2	14.0	2	100	0	56	50	0	0	50	1.00
36000--36078	31	2.5	31	77	2	86	16	26	29	27	1.97
48496--48573	35	2.3	34	88	4	113	41	23	2	33	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48511--48589	35	2.3	35	84	0	104	37	29	3	29	1.75

Tables:   1

The End!