Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000027.1 Hibiscus syriacus cultivar Beakdansim tig00000046_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83287

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5339--5401
32
1.9
33
84
9
85
44
1
4
49
1.33
13287--13337
16
3.3
15
83
10
50
41
1
11
45
1.52
13726--13754
15
1.9
15
100
0
58
41
3
6
48
1.47
13749--13780
16
2.0
16
93
0
55
40
0
15
43
1.47
23795--23949
65
2.4
65
83
2
177
29
18
21
30
1.96
26318--26378
28
2.2
28
96
0
113
54
16
6
22
1.65
26641--26718
23
3.5
22
73
7
77
30
23
21
24
1.99
28834--28864
16
1.9
16
93
0
53
64
9
3
22
1.38
30860--31016
65
2.4
65
84
2
190
28
17
22
31
1.97
32287--32561
138
2.0
138
100
0
550
34
8
9
48
1.66
36123--36196
21
3.6
21
76
12
73
55
0
0
44
0.99
36144--36198
3
19.0
3
85
7
60
61
0
0
38
0.96
36455--37693
113
11.0
113
94
0
2063
28
20
14
36
1.92
37963--38118
54
2.9
54
88
0
204
23
24
14
38
1.91
39004--39174
76
2.3
76
85
1
227
32
22
13
31
1.92
40258--40477
114
1.9
114
91
0
359
29
20
16
33
1.94
42741--42815
23
3.2
23
75
20
75
1
17
2
78
0.93
47848--47888
19
2.1
20
90
4
66
17
24
41
17
1.89
48130--48169
20
2.0
20
90
4
64
55
7
0
37
1.29
51299--51341
21
2.1
21
91
4
70
18
25
39
16
1.91
55779--55842
26
2.4
27
89
5
94
39
29
20
10
1.87
55783--55845
28
2.3
26
89
5
90
38
30
19
12
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
57485--57531
16
2.9
16
80
0
58
48
8
14
27
1.73
63544--63618
30
2.8
26
77
16
80
40
4
8
48
1.51
81133--81180
15
3.1
16
79
11
55
33
2
0
64
1.05
81262--81295
13
2.8
12
91
8
59
50
0
0
50
1.00
83117--83168
25
2.1
24
82
10
61
48
13
23
15
1.80

Tables:   1

The End!