Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002700.1 Hibiscus syriacus cultivar Beakdansim tig00005576_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 121970
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.33
Found at i:589 original size:22 final size:22
Alignment explanation
Indices: 563--639 Score: 136
Period size: 22 Copynumber: 3.5 Consensus size: 22
553 CACTACACTC
563 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
585 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
* *
607 TTTAAAGATGATAGATTCCCTT
1 TTCAAAGATGATAGATTCTCTT
629 TTCAAAGATGA
1 TTCAAAGATGA
640 AGCTTTATTG
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 52 1.00
ACGTcount: A:0.34, C:0.13, G:0.14, T:0.39
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:1613 original size:75 final size:76
Alignment explanation
Indices: 1301--2224 Score: 1615
Period size: 74 Copynumber: 12.3 Consensus size: 76
1291 CTATTTCCCA
1301 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1366 AGCCTTAGGGT
66 AGCCTTAGGGT
*
1377 CATTTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
1442 AGCCTTAAGGT
66 AGCCTTAGGGT
*
1453 CA--TGTAAGTCCTACAGTGCATGATGTTTCCAAAAATCCTTC-GGAGCTTTTTGATGTTTTC-A
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1514 AGCCTTAGGGT
66 AGCCTTAGGGT
* * *
1525 CATCTGTAAGTCCTACA-TGCATGATGTTTCCAAAAAGCCTTCGGGAGCATTTTGATATTTTTAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1589 AGCCTTAGGGT
66 AGCCTTAGGGT
1600 CATCTGTAAGTCCTACA-TGCATGATGTTTCC-AAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1663 AGCCTTAGGGT
66 AGCCTTAGGGT
* *
1674 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAACCTTCGGGAGATTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1739 AGCCTTAGGGT
66 AGCCTTAGGGT
* *
1750 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGAGAGCTTTTTGATGTTTTTAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1815 AGCCTTAGGGT
66 AGCCTTAGGGT
1826 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTC-GGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1890 AGCCTTAGGGT
66 AGCCTTAGGGT
*
1901 CATCTATAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGC-TTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
1965 AGCCTTAAGGT
66 AGCCTTAGGGT
1976 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTC-GGAGC-TTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
2039 AGCCTTAGGGT
66 AGCCTTAGGGT
2050 CATCTGTAAGTCCTACAGTGCATGATG-TTCCAAAAAGCCTTCGGGAG-TTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
2113 AGCCTTAGGGT
66 AGCCTTAGGGT
*
2124 CATCTGTAAGTCTTACAGTGCATGATGTTTCC-AAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
2188 AGCCTTAGGGT
66 AGCCTTAGGGT
* *
2199 CATCTGTAAGCCCTTCAGTGCATGAT
1 CATCTGTAAGTCCTACAGTGCATGAT
2225 TATTTTAAGA
Statistics
Matches: 810, Mismatches: 27, Indels: 23
0.94 0.03 0.03
Matches are distributed among these distances:
72 13 0.02
73 58 0.07
74 252 0.31
75 250 0.31
76 237 0.29
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (76 bp):
CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTTAGGGT
Found at i:2407 original size:14 final size:14
Alignment explanation
Indices: 2380--2414 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
2370 TCACTTTTAT
* *
2380 TAATATTATTATAA
1 TAATAATATAATAA
2394 TAATAATATAATAA
1 TAATAATATAATAA
2408 TAATAAT
1 TAATAAT
2415 TATTATTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
TAATAATATAATAA
Found at i:4224 original size:21 final size:22
Alignment explanation
Indices: 4194--4236 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
4184 CATTTTCTGA
*
4194 TATTTCTAAATAAATA-AAATT
1 TATTTATAAATAAATATAAATT
*
4215 TATTTATAAATATATATAAATT
1 TATTTATAAATAAATATAAATT
4237 AATATTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (22 bp):
TATTTATAAATAAATATAAATT
Found at i:5532 original size:60 final size:60
Alignment explanation
Indices: 5446--5624 Score: 202
Period size: 60 Copynumber: 3.0 Consensus size: 60
5436 ATCATATATC
* * *
5446 TCTAAACAATAACTCTCATTTTAAATTGGTCCTTAAACTTTTGAATATTCTAATTTCAT-
1 TCTAAACTATGACTCTCATTCTAAATTGGTCCTTAAACTTTTGAATATTCTAATTTCATA
* * * * *
5505 TCTCAAATTATGACTCTCATTCCAAATTAGTCCTTAGACTTTTGAACATTCTAATTTCATA
1 TCT-AAACTATGACTCTCATTCTAAATTGGTCCTTAAACTTTTGAATATTCTAATTTCATA
* * * *
5566 TCTAAACTATGACCCTCTTTCTAAATTAGTTCC-CAAACTTTTGAATATT-TCAATTTCAT
1 TCTAAACTATGACTCTCATTCTAAATT-GGTCCTTAAACTTTTGAATATTCT-AATTTCAT
5625 CCCCAAAATC
Statistics
Matches: 99, Mismatches: 17, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
59 4 0.04
60 89 0.90
61 6 0.06
ACGTcount: A:0.32, C:0.20, G:0.06, T:0.42
Consensus pattern (60 bp):
TCTAAACTATGACTCTCATTCTAAATTGGTCCTTAAACTTTTGAATATTCTAATTTCATA
Found at i:8803 original size:2 final size:2
Alignment explanation
Indices: 8796--8854 Score: 111
Period size: 2 Copynumber: 30.0 Consensus size: 2
8786 TATCAAAATA
8796 AT AT AT AT AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8837 AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT
8855 GCGTGCGCGT
Statistics
Matches: 56, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 55 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:10631 original size:13 final size:13
Alignment explanation
Indices: 10613--10649 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
10603 CCAAGGCAAG
10613 TCATTTCACTTGT
1 TCATTTCACTTGT
10626 TCATTTCACTTGT
1 TCATTTCACTTGT
10639 TCATTTCACTT
1 TCATTTCACTT
10650 AGGGAAGCGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.16, C:0.24, G:0.05, T:0.54
Consensus pattern (13 bp):
TCATTTCACTTGT
Found at i:12183 original size:12 final size:12
Alignment explanation
Indices: 12166--12190 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
12156 AGCACTGAAT
12166 TTCTTCTTTTTC
1 TTCTTCTTTTTC
12178 TTCTTCTTTTTC
1 TTCTTCTTTTTC
12190 T
1 T
12191 CTCTCTCTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TTCTTCTTTTTC
Found at i:14318 original size:18 final size:19
Alignment explanation
Indices: 14270--14310 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
14260 AACAAAGGTG
*
14270 AATAAAATAAATAAAGTAA
1 AATAAAAGAAATAAAGTAA
14289 AATAAAAGAAATAAAG-AA
1 AATAAAAGAAATAAAGTAA
14307 AATA
1 AATA
14311 TAGAAAATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (19 bp):
AATAAAAGAAATAAAGTAA
Found at i:14618 original size:31 final size:32
Alignment explanation
Indices: 14580--14639 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
14570 ATATAGTTAA
14580 ATATATATATCA-AATAAAACAAAA-ATAATGT
1 ATATATATAT-ATAATAAAACAAAATATAATGT
*
14611 ATATATATATATAATTAAACAAAATATAA
1 ATATATATATATAATAAAACAAAATATAA
14640 AATAATAATC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 1 0.04
31 21 0.81
32 4 0.15
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.32
Consensus pattern (32 bp):
ATATATATATATAATAAAACAAAATATAATGT
Found at i:16535 original size:37 final size:36
Alignment explanation
Indices: 16485--16922 Score: 209
Period size: 36 Copynumber: 12.7 Consensus size: 36
16475 TGTTTTAAGG
* *
16485 GAAACTGTCTCAAGAGAGACAAAATTTAGTTCCAAAA
1 GAAACAGTCTCAAGAGAGACAAAATTT-GTTTCAAAA
* * *
16522 GAAACAGTCTCAAGGGAGACACAATTTGTTTC-AAG
1 GAAACAGTCTCAAGAGAGACAAAATTTGTTTCAAAA
* * *
16557 GAATACAAAT-TC---AGAG----ATTTTGTTTCAAGA
1 GAA-AC-AGTCTCAAGAGAGACAAAATTTGTTTCAAAA
* * * **
16587 GAAACTGTCTTAAGAGAGACAAAATTTGTTTTACGA
1 GAAACAGTCTCAAGAGAGACAAAATTTGTTTCAAAA
16623 GAAA-ATGTCTCAAGAGAGACAAAATTTAG-TTCTAAAA
1 GAAACA-GTCTCAAGAGAGACAAAATTT-GTTTC-AAAA
* ** *
16660 GAAACTGTCTCAAGAGAGACGGAATTTGTTT-AAAG
1 GAAACAGTCTCAAGAGAGACAAAATTTGTTTCAAAA
* * * **
16695 GAAAACAAAT-TC-A-A-AG----ATTTTATTTCAAGG
1 G-AAAC-AGTCTCAAGAGAGACAAAATTTGTTTCAAAA
* *
16725 GAAACTGTCTCAAGAGAGACAAAACTTTGTTTC-AAG
1 GAAACAGTCTCAAGAGAGACAAAA-TTTGTTTCAAAA
* ** **
16761 GAAAACAAAT-TC-A-A-AG----TTTTTGTTTCAAGG
1 G-AAAC-AGTCTCAAGAGAGACAAAATTTGTTTCAAAA
* * *
16791 GAAACCGTCTCAAGAGAGACAAAATTTGTTTTAAGA
1 GAAACAGTCTCAAGAGAGACAAAATTTGTTTCAAAA
* *
16827 GAAA-ATGTCTCAAGAGAGACAAAATTTGTTTTAAGA
1 GAAACA-GTCTCAAGAGAGACAAAATTTGTTTCAAAA
* *
16863 GAAA-ATGTCTCAAGAGAGACAAAATTTGTTTTAAGA
1 GAAACA-GTCTCAAGAGAGACAAAATTTGTTTCAAAA
*
16899 GAAACTGTCTCAAGAGAGACAAAA
1 GAAACAGTCTCAAGAGAGACAAAA
16923 CTTTTTTTTG
Statistics
Matches: 312, Mismatches: 48, Indels: 83
0.70 0.11 0.19
Matches are distributed among these distances:
28 3 0.01
29 39 0.12
30 13 0.04
31 2 0.01
32 8 0.03
33 5 0.02
34 3 0.01
35 11 0.04
36 159 0.51
37 68 0.22
38 1 0.00
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.26
Consensus pattern (36 bp):
GAAACAGTCTCAAGAGAGACAAAATTTGTTTCAAAA
Found at i:16548 original size:102 final size:102
Alignment explanation
Indices: 16415--16867 Score: 292
Period size: 102 Copynumber: 4.4 Consensus size: 102
16405 GAAACTGTCA
* * * * *
16415 CAAAAGAAACTGTCTCGAGTGAGACAAAATTTGTTT-AATGGAAAATAGATTCAAAGATTTTGTT
1 CAAAAGAAACAGTCTCAAGGGAGACAAAATTTGTTTCAA-GGAAAACAAATTCAAAGATTTTGTT
* *
16479 TTAAGGGAAACTGTCTCAAGAGAGACAAAATTTAGTTC
65 TCAAGAGAAACTGTCTCAAGAGAGACAAAATTTAGTTC
* * *
16517 CAAAAGAAACAGTCTCAAGGGAGACACAATTTGTTTCAAGGAATACAAATTCAGAGATTTTGTTT
1 CAAAAGAAACAGTCTCAAGGGAGACAAAATTTGTTTCAAGGAAAACAAATTCAAAGATTTTGTTT
* *
16582 CAAGAGAAACTGTCTTAAGAGAGACAAAATTT-GTTT
66 CAAGAGAAACTGTCTCAAGAGAGACAAAATTTAGTTC
* ** * * * **
16618 TACGAGAAA-ATGTCTCAAGAGAGACAAAATTTAGTTCTAAAAG-AAAC-TGTCTCAAGAGAGAC
1 CAAAAGAAACA-GTCTCAAGGGAGACAAAATTT-GTT-TCAAGGAAAACAAAT-TC---A-A-A-
* * ** * *
16680 GGAATTTGTTTAAAG-GAAAACAAAT-TC-A-A-AG----ATTTTA-TTT
56 -GATTTTGTTTCAAGAG-AAAC-TGTCTCAAGAGAGACAAAATTTAGTTC
** * * *
16720 CAAGGGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGAAAACAAATTCAAAGTTTTTGTT
1 CAAAAGAAACAGTCTCAAGGGAGACAAAA-TTTGTTTCAAGGAAAACAAATTCAAAGATTTTGTT
* * *
16785 TCAAGGGAAACCGTCTCAAGAGAGACAAAATTT-GTTT
65 TCAAGAGAAACTGTCTCAAGAGAGACAAAATTTAGTTC
* * * *
16822 TAAGAGAAA-ATGTCTCAAGAGAGACAAAATTTGTTTTAAGAGAAAA
1 CAAAAGAAACA-GTCTCAAGGGAGACAAAATTTGTTTCAAG-GAAAA
16868 TGTCTCAAGA
Statistics
Matches: 273, Mismatches: 47, Indels: 62
0.71 0.12 0.16
Matches are distributed among these distances:
94 1 0.00
95 17 0.06
96 2 0.01
97 2 0.01
98 3 0.01
99 1 0.00
100 1 0.00
101 43 0.16
102 168 0.62
103 10 0.04
105 1 0.00
106 2 0.01
107 2 0.01
108 2 0.01
109 17 0.06
110 1 0.00
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.27
Consensus pattern (102 bp):
CAAAAGAAACAGTCTCAAGGGAGACAAAATTTGTTTCAAGGAAAACAAATTCAAAGATTTTGTTT
CAAGAGAAACTGTCTCAAGAGAGACAAAATTTAGTTC
Found at i:16615 original size:36 final size:36
Alignment explanation
Indices: 16575--16922 Score: 284
Period size: 36 Copynumber: 10.0 Consensus size: 36
16565 ATTCAGAGAT
*
16575 TTTGTTTCAAGAGAAACTGTCTTAAGAGAGACAAAA
1 TTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
* * *
16611 TTTGTTTTACGAGAAAATGTCTCAAGAGAGACAAAA
1 TTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
* **
16647 TTTAG-TTCTAAAAGAAACTGTCTCAAGAGAGACGGAA
1 TTT-GTTTC-AAGAGAAACTGTCTCAAGAGAGACAAAA
* ** *
16684 TTTGTTTAAAG-GAAAACAAAT-TC-A-A-AG----AT
1 TTTGTTTCAAGAG-AAAC-TGTCTCAAGAGAGACAAAA
* *
16713 TTTATTTCAAGGGAAACTGTCTCAAGAGAGACAAAA
1 TTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
** **
16749 CTTTGTTTCAAG-GAAAACAAAT-TC-A-A-AG----TT
1 -TTTGTTTCAAGAG-AAAC-TGTCTCAAGAGAGACAAAA
* *
16779 TTTGTTTCAAGGGAAACCGTCTCAAGAGAGACAAAA
1 TTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
* *
16815 TTTGTTTTAAGAGAAAATGTCTCAAGAGAGACAAAA
1 TTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
* *
16851 TTTGTTTTAAGAGAAAATGTCTCAAGAGAGACAAAA
1 TTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
*
16887 TTTGTTTTAAGAGAAACTGTCTCAAGAGAGACAAAA
1 TTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
16923 CTTTTTTTTG
Statistics
Matches: 252, Mismatches: 34, Indels: 52
0.75 0.10 0.15
Matches are distributed among these distances:
28 2 0.01
29 33 0.13
30 4 0.02
31 2 0.01
32 4 0.02
33 2 0.01
34 3 0.01
35 3 0.01
36 152 0.60
37 46 0.18
38 1 0.00
ACGTcount: A:0.42, C:0.11, G:0.19, T:0.27
Consensus pattern (36 bp):
TTTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA
Found at i:16721 original size:138 final size:139
Alignment explanation
Indices: 16473--16922 Score: 442
Period size: 138 Copynumber: 3.3 Consensus size: 139
16463 ATTCAAAGAT
* * *
16473 TTTGTTTTAAGGGAAACTGTCTCAAGAGAGACAAAATTTAGTTCCAAAAGAAACAGTCTCAAGGG
1 TTTGTTTTAAGAGAAAATGTCTCAAGAGAGACAAAATTTAGTTCCAAAAGAAACAGTCTCAAGAG
* * * * *
16538 AGACACAATTTGTTTCAAGGAATACAAATTCAGAGATTTTGTTTCAAGAGAAACTGTCTTAAGAG
66 AGACACAATTTGTTTAAAGGAAAACAAATTCAAAGATTTTATTTCAAGAGAAACTGTCTCAAGAG
16603 AGACAAAA-
131 AGACAAAAC
* * *
16611 TTTGTTTTACGAGAAAATGTCTCAAGAGAGACAAAATTTAGTTCTAAAAGAAACTGTCTCAAGAG
1 TTTGTTTTAAGAGAAAATGTCTCAAGAGAGACAAAATTTAGTTCCAAAAGAAACAGTCTCAAGAG
** *
16676 AGACGGAATTTGTTTAAAGGAAAACAAATTCAAAGATTTTATTTCAAGGGAAACTGTCTCAAGAG
66 AGACACAATTTGTTTAAAGGAAAACAAATTCAAAGATTTTATTTCAAGAGAAACTGTCTCAAGAG
16741 AGACAAAAC
131 AGACAAAAC
* ** * * * ** *
16750 TTTGTTTCAAG-GAAAA-----C-A-A-ATTCAAAGTTTTTGTTTCAAGGGAAACCGTCTCAAGA
1 TTTGTTTTAAGAGAAAATGTCTCAAGAGAGACAAA-ATTTAGTTCCAAAAGAAACAGTCTCAAGA
* * ** *
16806 GAGACAAAATTTGTTTTAAGAGAAAATGTCTCAAGAGAGACAAA-ATTTGT-TTT-AAGAGAAAA
65 GAGACACAATTTGTTTAAAG-GAAAA-----C-A-A-ATTCAAAGATTT-TATTTCAAGAGAAAC
16868 TGTCTCAAGAGAGACAAAA-
120 TGTCTCAAGAGAGACAAAAC
*
16887 TTTGTTTTAAGAGAAACTGTCTCAAGAGAGACAAAA
1 TTTGTTTTAAGAGAAAATGTCTCAAGAGAGACAAAA
16923 CTTTTTTTTG
Statistics
Matches: 254, Mismatches: 37, Indels: 35
0.78 0.11 0.11
Matches are distributed among these distances:
130 5 0.02
131 40 0.16
132 6 0.02
133 1 0.00
137 11 0.04
138 160 0.63
139 17 0.07
140 6 0.02
143 1 0.00
144 1 0.00
145 1 0.00
146 5 0.02
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.27
Consensus pattern (139 bp):
TTTGTTTTAAGAGAAAATGTCTCAAGAGAGACAAAATTTAGTTCCAAAAGAAACAGTCTCAAGAG
AGACACAATTTGTTTAAAGGAAAACAAATTCAAAGATTTTATTTCAAGAGAAACTGTCTCAAGAG
AGACAAAAC
Found at i:16770 original size:66 final size:65
Alignment explanation
Indices: 16659--16831 Score: 247
Period size: 66 Copynumber: 2.6 Consensus size: 65
16649 TAGTTCTAAA
** *
16659 AGAAACTGTCTCAAGAGAGACGGAATTTGTTTAAAGGAAAACAAATTCAAAGATTTTATTTCAAG
1 AGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGGAAAACAAATTCAAAGATTTTATTTCAAG
* * *
16724 GGAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGAAAACAAATTCAAAGTTTTTGTTTCAA
1 AGAAACTGTCTCAAGAGAGACAAAA-TTTGTTTCAAGGAAAACAAATTCAAAGATTTTATTTCAA
16789 G
65 G
* * *
16790 GGAAACCGTCTCAAGAGAGACAAAATTTGTTTTAAGAGAAAA
1 AGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAG-GAAAA
16832 TGTCTCAAGA
Statistics
Matches: 98, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
65 32 0.33
66 66 0.67
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.27
Consensus pattern (65 bp):
AGAAACTGTCTCAAGAGAGACAAAATTTGTTTCAAGGAAAACAAATTCAAAGATTTTATTTCAAG
Found at i:16786 original size:204 final size:203
Alignment explanation
Indices: 16522--16902 Score: 593
Period size: 204 Copynumber: 1.9 Consensus size: 203
16512 AGTTCCAAAA
* * * *
16522 GAAACAGTCTCAAGGGAGACACAATTTGTTTCAAGGAATACAAATTCAGAGATTTTGTTTCAAGA
1 GAAACAGTCTCAAGAGAGACAAAATTTGTTTCAAGGAAAACAAATTCAAAGATTTTGTTTCAAGA
* * *
16587 GAAACTGTCTTAAGAGAGACAAAATTTGTTTTACGAGAAAATGTCTCAAGAGAGACAAAATTTAG
66 GAAACCGTCTCAAGAGAGACAAAATTTGTTTTAAGAGAAAATGTCTCAAGAGAGACAAAATTT-G
* **
16652 TTCTAAAAGAAACTGTCTCAAGAGAGACGGAATTTGTTTAAAG-GAAAACAAATTCAAAGATTTT
130 TTCTAAAAGAAAATGTCTCAAGAGAGACAAAATTTGTTTAAAGAGAAAACAAATTCAAAGATTTT
16716 ATTTCAAGG
195 ATTTCAAGG
* *
16725 GAAACTGTCTCAAGAGAGACAAAACTTTGTTTCAAGGAAAACAAATTCAAAGTTTTTGTTTCAAG
1 GAAACAGTCTCAAGAGAGACAAAA-TTTGTTTCAAGGAAAACAAATTCAAAGATTTTGTTTCAAG
*
16790 GGAAACCGTCTCAAGAGAGACAAAATTTGTTTTAAGAGAAAATGTCTCAAGAGAGACAAAATTTG
65 AGAAACCGTCTCAAGAGAGACAAAATTTGTTTTAAGAGAAAATGTCTCAAGAGAGACAAAATTTG
* * *
16855 TTTTAAGAGAAAATGTCTCAAGAGAGACAAAATTTGTTTTAAGAGAAA
130 TTCTAAAAGAAAATGTCTCAAGAGAGACAAAATTTGTTTAAAGAGAAA
16903 CTGTCTCAAG
Statistics
Matches: 160, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
203 59 0.37
204 101 0.63
ACGTcount: A:0.42, C:0.12, G:0.19, T:0.27
Consensus pattern (203 bp):
GAAACAGTCTCAAGAGAGACAAAATTTGTTTCAAGGAAAACAAATTCAAAGATTTTGTTTCAAGA
GAAACCGTCTCAAGAGAGACAAAATTTGTTTTAAGAGAAAATGTCTCAAGAGAGACAAAATTTGT
TCTAAAAGAAAATGTCTCAAGAGAGACAAAATTTGTTTAAAGAGAAAACAAATTCAAAGATTTTA
TTTCAAGG
Found at i:16863 original size:19 final size:19
Alignment explanation
Indices: 16805--16900 Score: 64
Period size: 19 Copynumber: 5.3 Consensus size: 19
16795 CCGTCTCAAG
16805 AGAGACAAAATTTGTTTTA
1 AGAGACAAAATTTGTTTTA
**
16824 AGAG--AAAA--TGTCTCAA
1 AGAGACAAAATTTGT-TTTA
16840 GAGAGACAAAATTTGTTTTA
1 -AGAGACAAAATTTGTTTTA
**
16860 AGAG--AAAA--TGTCTCAA
1 AGAGACAAAATTTGT-TTTA
16876 GAGAGACAAAATTTGTTTTA
1 -AGAGACAAAATTTGTTTTA
16896 AGAGA
1 AGAGA
16901 AACTGTCTCA
Statistics
Matches: 57, Mismatches: 8, Indels: 24
0.64 0.09 0.27
Matches are distributed among these distances:
15 6 0.11
16 4 0.07
17 16 0.28
19 21 0.37
20 4 0.07
21 6 0.11
ACGTcount: A:0.45, C:0.07, G:0.20, T:0.28
Consensus pattern (19 bp):
AGAGACAAAATTTGTTTTA
Found at i:18317 original size:83 final size:89
Alignment explanation
Indices: 18230--18427 Score: 212
Period size: 95 Copynumber: 2.2 Consensus size: 89
18220 GAGCCAATGT
* * *
18230 GTTTAACCAATTTCTCTAGAATGACAGCTC-A-A-TAT-GTA-AAT-ACCTTTATCAGGTTAGCT
1 GTTTAACCAATTACTCTAGAAGGACAGCTCAATATTATAGTATAATCACCTTTATCAGGCTAGCT
*
18289 GAATATTATCCATAAAGTCGGGGC
66 GAATATTATCCATAAAGCCGGGGC
* *
18313 GTTTAACCAATTGC-CTTAGAGGGACAGCTCAAGCTTTATTGTATAGTATAATCACCTTTATCAG
1 GTTTAACCAATTACTC-TAGAAGGACAGCTCAA----TA-T-TATAGTATAATCACCTTTATCAG
*
18377 GCTAGCTGAATATTATCCATAAAGCCGTGGC
59 GCTAGCTGAATATTATCCATAAAGCCGGGGC
*
18408 GATTAACCAATTACTCTAGA
1 GTTTAACCAATTACTCTAGA
18428 GGGAAAACCC
Statistics
Matches: 93, Mismatches: 8, Indels: 16
0.79 0.07 0.14
Matches are distributed among these distances:
82 1 0.01
83 25 0.27
84 1 0.01
89 1 0.01
92 3 0.03
93 3 0.03
94 3 0.03
95 55 0.59
96 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (89 bp):
GTTTAACCAATTACTCTAGAAGGACAGCTCAATATTATAGTATAATCACCTTTATCAGGCTAGCT
GAATATTATCCATAAAGCCGGGGC
Found at i:18441 original size:95 final size:95
Alignment explanation
Indices: 18271--18452 Score: 276
Period size: 95 Copynumber: 1.9 Consensus size: 95
18261 ATATGTAAAT
* * * *
18271 ACCTTTATCAGGTTAGCTGAATATTATCCATAAAGTCGGGGCGTTTAACCAATTGCCTTAGAGGG
1 ACCTTTATCAGGCTAGCTGAATATTATCCATAAAGCCGGGGCGATTAACCAATTACCTTAGAGGG
* * *
18336 ACAGCTCAAGCTTTATTGTATAGTATAATC
66 AAAACCCAAGCTTTATTGTATAGTATAATC
*
18366 ACCTTTATCAGGCTAGCTGAATATTATCCATAAAGCCGTGGCGATTAACCAATTA-CTCTAGAGG
1 ACCTTTATCAGGCTAGCTGAATATTATCCATAAAGCCGGGGCGATTAACCAATTACCT-TAGAGG
18430 GAAAACCCAAGCTTTATTGTATA
65 GAAAACCCAAGCTTTATTGTATA
18453 TAAATAATAT
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
94 2 0.03
95 76 0.97
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (95 bp):
ACCTTTATCAGGCTAGCTGAATATTATCCATAAAGCCGGGGCGATTAACCAATTACCTTAGAGGG
AAAACCCAAGCTTTATTGTATAGTATAATC
Found at i:22618 original size:24 final size:22
Alignment explanation
Indices: 22564--22618 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 22
22554 AGATGGAAAG
*
22564 AATAAAATAAAATAAAAAATGA
1 AATAAAACAAAATAAAAAATGA
*
22586 AGATGAAAACAAAATAAAACATGTGA
1 A-AT-AAAACAAAATAAAA-A-ATGA
22612 AATAAAA
1 AATAAAA
22619 TAATAATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
22 1 0.04
23 2 0.07
24 17 0.63
25 3 0.11
26 4 0.15
ACGTcount: A:0.71, C:0.04, G:0.09, T:0.16
Consensus pattern (22 bp):
AATAAAACAAAATAAAAAATGA
Found at i:22883 original size:19 final size:19
Alignment explanation
Indices: 22859--22924 Score: 96
Period size: 19 Copynumber: 3.5 Consensus size: 19
22849 AAAGAAAATT
*
22859 GGGTTTAAAATTAGATTTA
1 GGGTTTAAAATAAGATTTA
22878 GGGTTTAAAATAAGATTTA
1 GGGTTTAAAATAAGATTTA
** *
22897 GGGTTTAAAATCGGATTTG
1 GGGTTTAAAATAAGATTTA
22916 GGGTTTAAA
1 GGGTTTAAA
22925 TTGAGCCTTC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 43 1.00
ACGTcount: A:0.35, C:0.02, G:0.26, T:0.38
Consensus pattern (19 bp):
GGGTTTAAAATAAGATTTA
Found at i:26095 original size:31 final size:31
Alignment explanation
Indices: 26060--26135 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 31
26050 TAATATGTCA
*
26060 AATATGATATCTATAATCCAATAAAATATTT
1 AATATGATATCTATAATCCAATAAAATAGTT
* **
26091 AATATGATA-CATATACTTTAATAAAATAGTT
1 AATATGATATC-TATAATCCAATAAAATAGTT
*
26122 AATGTGATATCTAT
1 AATATGATATCTAT
26136 TTTTTTAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
30 1 0.03
31 36 0.95
32 1 0.03
ACGTcount: A:0.46, C:0.08, G:0.07, T:0.39
Consensus pattern (31 bp):
AATATGATATCTATAATCCAATAAAATAGTT
Found at i:31819 original size:24 final size:24
Alignment explanation
Indices: 31788--31859 Score: 90
Period size: 24 Copynumber: 3.0 Consensus size: 24
31778 GATACATTAC
* *
31788 CTGAATTCTATTATGATTTCTGAT
1 CTGAATTCTGTTTTGATTTCTGAT
* * *
31812 CTGGATTCTGTTTTGATATCTTAT
1 CTGAATTCTGTTTTGATTTCTGAT
*
31836 CTGAATTTTGTTTTGATTTCTGAT
1 CTGAATTCTGTTTTGATTTCTGAT
31860 ATCTCCGTTT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.19, C:0.11, G:0.15, T:0.54
Consensus pattern (24 bp):
CTGAATTCTGTTTTGATTTCTGAT
Found at i:31829 original size:48 final size:48
Alignment explanation
Indices: 31768--31859 Score: 123
Period size: 48 Copynumber: 1.9 Consensus size: 48
31758 TCCGACTTGA
31768 ATTCTGTTATGATA-CATTACCTGAATTCTATTATGATTTCTGATCTGG
1 ATTCTGTTATGATATC-TTACCTGAATTCTATTATGATTTCTGATCTGG
* * * * *
31816 ATTCTGTTTTGATATCTTATCTGAATTTTGTTTTGATTTCTGAT
1 ATTCTGTTATGATATCTTACCTGAATTCTATTATGATTTCTGAT
31860 ATCTCCGTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
48 37 0.97
49 1 0.03
ACGTcount: A:0.22, C:0.12, G:0.14, T:0.52
Consensus pattern (48 bp):
ATTCTGTTATGATATCTTACCTGAATTCTATTATGATTTCTGATCTGG
Found at i:36642 original size:12 final size:12
Alignment explanation
Indices: 36622--36691 Score: 63
Period size: 12 Copynumber: 5.8 Consensus size: 12
36612 GATACATTAC
*
36622 CTGAATTCTGTT
1 CTGATTTCTGTT
36634 CTGATTTCT-TAT
1 CTGATTTCTGT-T
36646 CTAGA-TTCTGTT
1 CT-GATTTCTGTT
* *
36658 CTGATATCTGAT
1 CTGATTTCTGTT
*
36670 CTGAATTCTGTT
1 CTGATTTCTGTT
*
36682 TTGATTTCTG
1 CTGATTTCTG
36692 ATATCTCCGT
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
11 3 0.07
12 40 0.87
13 3 0.07
ACGTcount: A:0.17, C:0.16, G:0.16, T:0.51
Consensus pattern (12 bp):
CTGATTTCTGTT
Found at i:36653 original size:24 final size:24
Alignment explanation
Indices: 36622--36693 Score: 101
Period size: 24 Copynumber: 3.0 Consensus size: 24
36612 GATACATTAC
*
36622 CTGAATTCTGTTCTGATTTCTTAT
1 CTGAATTCTGTTCTGATTTCTGAT
*
36646 CT-AGATTCTGTTCTGATATCTGAT
1 CTGA-ATTCTGTTCTGATTTCTGAT
*
36670 CTGAATTCTGTTTTGATTTCTGAT
1 CTGAATTCTGTTCTGATTTCTGAT
36694 ATCTCCGTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
23 1 0.02
24 40 0.95
25 1 0.02
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.51
Consensus pattern (24 bp):
CTGAATTCTGTTCTGATTTCTGAT
Found at i:37911 original size:9 final size:9
Alignment explanation
Indices: 37897--37921 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
37887 TAAAAGGTAC
37897 TGAAAGATA
1 TGAAAGATA
37906 TGAAAGATA
1 TGAAAGATA
37915 TGAAAGA
1 TGAAAGA
37922 ACTGATGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.24, T:0.20
Consensus pattern (9 bp):
TGAAAGATA
Found at i:41488 original size:24 final size:24
Alignment explanation
Indices: 41458--41528 Score: 97
Period size: 24 Copynumber: 3.0 Consensus size: 24
41448 ATACATTACT
41458 TGAATTCTGTTATAATTTCTGATC
1 TGAATTCTGTTATAATTTCTGATC
* * *
41482 TGGATTCTGTTCTAATATCTGATC
1 TGAATTCTGTTATAATTTCTGATC
* *
41506 TGAATTCTGTTTTGATTTCTGAT
1 TGAATTCTGTTATAATTTCTGAT
41529 AACTCCATTT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 40 1.00
ACGTcount: A:0.21, C:0.13, G:0.15, T:0.51
Consensus pattern (24 bp):
TGAATTCTGTTATAATTTCTGATC
Found at i:48337 original size:24 final size:24
Alignment explanation
Indices: 48310--48416 Score: 92
Period size: 24 Copynumber: 4.5 Consensus size: 24
48300 TTTGGGTATC
*
48310 TGATTTCTGA-CTTGAATTCTATTA
1 TGATTTCTGATC-TGAATTCTGTTA
* * * * *
48334 TGATATATTACCTGAATTCTGTTC
1 TGATTTCTGATCTGAATTCTGTTA
* *
48358 TTATTTCTGATCTGGATTCTGTTA
1 TGATTTCTGATCTGAATTCTGTTA
* *
48382 TG-TTATCTGATCTGAATTCTTTTT
1 TGATT-TCTGATCTGAATTCTGTTA
48406 TGATTTCTGAT
1 TGATTTCTGAT
48417 ATCTTCGTTT
Statistics
Matches: 64, Mismatches: 16, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
23 2 0.03
24 59 0.92
25 3 0.05
ACGTcount: A:0.21, C:0.13, G:0.14, T:0.52
Consensus pattern (24 bp):
TGATTTCTGATCTGAATTCTGTTA
Found at i:48383 original size:48 final size:49
Alignment explanation
Indices: 48310--48416 Score: 121
Period size: 48 Copynumber: 2.2 Consensus size: 49
48300 TTTGGGTATC
*
48310 TGATTTCTGA-CTTGAATTCTATTATGATATATTACCTGAATTCTGTTCT
1 TGATTTCTGATCTTGAATTCTATTATGATATATGACCTGAATTCT-TTCT
* * * * * *
48359 T-ATTTCTGATC-TGGATTCTGTTATGTTATCTGATCTGAATTCTTTTT
1 TGATTTCTGATCTTGAATTCTATTATGATATATGACCTGAATTCTTTCT
48406 TGATTTCTGAT
1 TGATTTCTGAT
48417 ATCTTCGTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
47 4 0.08
48 43 0.88
49 2 0.04
ACGTcount: A:0.21, C:0.13, G:0.14, T:0.52
Consensus pattern (49 bp):
TGATTTCTGATCTTGAATTCTATTATGATATATGACCTGAATTCTTTCT
Found at i:53179 original size:24 final size:24
Alignment explanation
Indices: 53144--53215 Score: 65
Period size: 24 Copynumber: 3.0 Consensus size: 24
53134 GATACATTAC
* *
53144 CTGAATTATGTTCTGATTTCTGAT
1 CTGAATTCTGTTATGATTTCTGAT
* * *
53168 CT-AGATTCTGTTATGGTATCTTAT
1 CTGA-ATTCTGTTATGATTTCTGAT
* *
53192 CTGAATTCTATTTTGATTTCTGAT
1 CTGAATTCTGTTATGATTTCTGAT
53216 ATATCCGTTT
Statistics
Matches: 36, Mismatches: 10, Indels: 4
0.72 0.20 0.08
Matches are distributed among these distances:
23 1 0.03
24 34 0.94
25 1 0.03
ACGTcount: A:0.21, C:0.12, G:0.15, T:0.51
Consensus pattern (24 bp):
CTGAATTCTGTTATGATTTCTGAT
Found at i:54324 original size:12 final size:12
Alignment explanation
Indices: 54307--54337 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
54297 ATAAGACTTA
54307 AAAAAAAAAAGG
1 AAAAAAAAAAGG
*
54319 AAAAAACAAAGG
1 AAAAAAAAAAGG
54331 AAAAAAA
1 AAAAAAA
54338 CAGCTGCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.84, C:0.03, G:0.13, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAGG
Found at i:56773 original size:28 final size:28
Alignment explanation
Indices: 56740--56796 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
56730 ATCTCCGTGT
56740 ACATTATGTCATCGAACCAGTGCTTGAA
1 ACATTATGTCATCGAACCAGTGCTTGAA
** *
56768 ACATTATGTCATCGAGTCGGTGCTTGAA
1 ACATTATGTCATCGAACCAGTGCTTGAA
56796 A
1 A
56797 GCAACGATAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (28 bp):
ACATTATGTCATCGAACCAGTGCTTGAA
Found at i:57093 original size:60 final size:59
Alignment explanation
Indices: 56931--57093 Score: 150
Period size: 60 Copynumber: 2.7 Consensus size: 59
56921 TTGATTAATC
* * * * *
56931 ATTTTGTAACTTTTAATAGTCAAATGACTTAACAAAATATCACTAGATAGACATGAGAAT
1 ATTTTGTAACTTTTAATAATCATA-GACTTAACAAAAAATCAATAGATAGACAAGAGAAT
** * ** **
56991 ATTTTGTAACTTTTAATAATCATGAGA-TTCAACGTAACATCAATCTATAGTTAAGA-AATT
1 ATTTTGTAACTTTTAATAATCAT-AGACTT-AACAAAAAATCAATAGATAGACAAGAGAA-T
*
57051 ATTTTGTAACTTTTAATAATCATACGACTTAATAAAAAATCAA
1 ATTTTGTAACTTTTAATAATCATA-GACTTAACAAAAAATCAA
57094 CAAAACAACA
Statistics
Matches: 83, Mismatches: 15, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
59 5 0.06
60 75 0.90
61 3 0.04
ACGTcount: A:0.43, C:0.12, G:0.09, T:0.36
Consensus pattern (59 bp):
ATTTTGTAACTTTTAATAATCATAGACTTAACAAAAAATCAATAGATAGACAAGAGAAT
Found at i:68550 original size:16 final size:16
Alignment explanation
Indices: 68499--68628 Score: 86
Period size: 16 Copynumber: 8.1 Consensus size: 16
68489 ATTTTAGTTG
68499 AACCGAAAA-CAACCCA
1 AACC-AAAATCAACCCA
* * * *
68515 AATCAGAATCAATCGA
1 AACCAAAATCAACCCA
**
68531 AACCAAAATCAACCTG
1 AACCAAAATCAACCCA
* *
68547 AACCGAAATTAACCCA
1 AACCAAAATCAACCCA
* *
68563 AACCAAAATCCACCCG
1 AACCAAAATCAACCCA
*
68579 AACAGAAAAT-AACCCA
1 AAC-CAAAATCAACCCA
*
68595 AACCGAAAAT-AACCCT
1 AACC-AAAATCAACCCA
* *
68611 AACCAAAAACTACCCA
1 AACCAAAATCAACCCA
68627 AA
1 AA
68629 TTTAATTTAC
Statistics
Matches: 85, Mismatches: 25, Indels: 8
0.72 0.21 0.07
Matches are distributed among these distances:
15 7 0.08
16 73 0.86
17 5 0.06
ACGTcount: A:0.53, C:0.32, G:0.06, T:0.09
Consensus pattern (16 bp):
AACCAAAATCAACCCA
Found at i:68566 original size:32 final size:32
Alignment explanation
Indices: 68530--68609 Score: 108
Period size: 32 Copynumber: 2.5 Consensus size: 32
68520 GAATCAATCG
* * *
68530 AAACCAAAATCAACCTGAACCGAAATTAACCC
1 AAACCAAAATCAACCCGAACAGAAAATAACCC
*
68562 AAACCAAAATCCACCCGAACAGAAAATAACCC
1 AAACCAAAATCAACCCGAACAGAAAATAACCC
68594 AAACCGAAAAT-AACCC
1 AAACC-AAAATCAACCC
68610 TAACCAAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
32 37 0.88
33 5 0.12
ACGTcount: A:0.53, C:0.33, G:0.06, T:0.09
Consensus pattern (32 bp):
AAACCAAAATCAACCCGAACAGAAAATAACCC
Found at i:72564 original size:12 final size:12
Alignment explanation
Indices: 72550--72620 Score: 63
Period size: 12 Copynumber: 5.8 Consensus size: 12
72540 TAATTTAATT
*
72550 TATATTTATATT
1 TATATTTATATA
72562 TAT-TTTAATGAGTA
1 TATATTT-AT-A-TA
*
72576 TATATATATATA
1 TATATTTATATA
*
72588 TATATATATATA
1 TATATTTATATA
*
72600 TATATATATATA
1 TATATTTATATA
*
72612 TATCTTTAT
1 TATATTTAT
72621 TGCTTTTTAT
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
11 3 0.06
12 38 0.75
13 2 0.04
14 6 0.12
15 2 0.04
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (12 bp):
TATATTTATATA
Found at i:72581 original size:2 final size:2
Alignment explanation
Indices: 72574--72614 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
72564 TTTTAATGAG
72574 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
72615 CTTTATTGCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:75883 original size:23 final size:23
Alignment explanation
Indices: 75834--75887 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
75824 TGACGAATAT
* *
75834 TAAACGAACATGTTTGCAAACGT
1 TAAACGAACATGTTCGCAAACGC
* *
75857 TAAACGAACATGTTCGCGAATGC
1 TAAACGAACATGTTCGCAAACGC
75880 TAAACGAA
1 TAAACGAA
75888 TAAAATACAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.41, C:0.19, G:0.19, T:0.22
Consensus pattern (23 bp):
TAAACGAACATGTTCGCAAACGC
Found at i:75989 original size:16 final size:16
Alignment explanation
Indices: 75953--75990 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
75943 TAACGAATGC
75953 TAAACAAATAAAATAA
1 TAAACAAATAAAATAA
75969 T-AACAAATTAAAA-AA
1 TAAACAAA-TAAAATAA
75984 TAAACAA
1 TAAACAA
75991 GCAAAGACGA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.74, C:0.08, G:0.00, T:0.18
Consensus pattern (16 bp):
TAAACAAATAAAATAA
Found at i:79488 original size:2 final size:2
Alignment explanation
Indices: 79481--79552 Score: 119
Period size: 2 Copynumber: 36.5 Consensus size: 2
79471 TGCTTATCCA
79481 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
79523 AT AT AT AT AT AT AT AT AA AT GT A- AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
79553 ATTTTTATTA
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
1 1 0.02
2 64 0.98
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (2 bp):
AT
Found at i:81321 original size:2 final size:2
Alignment explanation
Indices: 81314--81371 Score: 54
Period size: 2 Copynumber: 31.5 Consensus size: 2
81304 CCGCCCTGAT
* *
81314 TA TA TA TA TA TA TA TA TA TA -A TA T- TT TA TA TA T- TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
81353 TA AA T- TA TA TA TA TA -A TA T
1 TA TA TA TA TA TA TA TA TA TA T
81372 TTTATATTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
1 5 0.11
2 42 0.89
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:81346 original size:9 final size:9
Alignment explanation
Indices: 81320--81386 Score: 59
Period size: 9 Copynumber: 7.6 Consensus size: 9
81310 TGATTATATA
*
81320 TATATATATA
1 TATATAT-TT
81330 TATAATATTT
1 TAT-ATATTT
81340 TATATATTT
1 TATATATTT
**
81349 TATATAAAT
1 TATATATTT
*
81358 TATATA-TA
1 TATATATTT
81366 TA-ATATTT
1 TATATATTT
81374 TATAT-TTT
1 TATATATTT
81382 TATAT
1 TATAT
81387 TAATTATATA
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
7 3 0.06
8 13 0.27
9 21 0.44
10 7 0.15
11 4 0.08
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
TATATATTT
Found at i:81383 original size:33 final size:34
Alignment explanation
Indices: 81313--81407 Score: 147
Period size: 33 Copynumber: 2.8 Consensus size: 34
81303 CCCGCCCTGA
*
81313 TTATATATATATATATATATAATATTTTATATATT
1 TTATATAAAT-TATATATATAATATTTTATATATT
81348 TTATATAAATTATATATATAATATTTTATAT-TT
1 TTATATAAATTATATATATAATATTTTATATATT
* *
81381 TTATATTAATTATATATAAAATATTTT
1 TTATATAAATTATATATATAATATTTT
81408 CGGGTTCGGG
Statistics
Matches: 57, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
33 27 0.47
34 21 0.37
35 9 0.16
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (34 bp):
TTATATAAATTATATATATAATATTTTATATATT
Found at i:81383 original size:42 final size:44
Alignment explanation
Indices: 81316--81400 Score: 113
Period size: 42 Copynumber: 2.0 Consensus size: 44
81306 GCCCTGATTA
*
81316 TATATATATATATATATAATATTTTATA-T-ATTTTATATAAAT
1 TATATATATATATATATAATATTTTATATTAATTATATATAAAT
* *
81358 TATATATATA-ATATTTTATATTTTTATATTAATTATATATAAA
1 TATATATATATATATATAATA-TTTTATATTAATTATATATAAA
81401 ATATTTTCGG
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
41 8 0.22
42 17 0.46
43 1 0.03
44 11 0.30
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (44 bp):
TATATATATATATATATAATATTTTATATTAATTATATATAAAT
Found at i:81981 original size:276 final size:276
Alignment explanation
Indices: 81488--82041 Score: 1090
Period size: 276 Copynumber: 2.0 Consensus size: 276
81478 CAGGGATAGG
81488 GATTCATTTCTGGTTCGGGGACGGGGCGAGCAAAACCCGCCCCGAACCCGACCCGTCCTATTGAA
1 GATTCATTTCTGGTTCGGGGACGGGGCGAGCAAAACCCGCCCCGAACCCGACCCGTCCTATTGAA
81553 AAGAAAAAAAGAGACTCTGGAGTCTATAAGTAGTAGCATTGTATATCCTATCAAACATGTTTTTG
66 AAGAAAAAAAGAGACTCTGGAGTCTATAAGTAGTAGCATTGTATATCCTATCAAACATGTTTTTG
81618 GAGAATAAGATAATGATCTTGTGACAAGTGATATCAGAATGATCCTTTAATTATTCGATTTCATG
131 GAGAATAAGATAATGATCTTGTGACAAGTGATATCAGAATGATCCTTTAATTATTCGATTTCATG
81683 TTGAGCGCCCCAATAGGTGGGATAGGTAGTGTAGACAAATGTAATAATGGTCCGTGATGAGGGCA
196 TTGAGCGCCCCAATAGGTGGGATAGGTAGTGTAGACAAATGTAATAATGGTCCGTGATGAGGGCA
81748 TCACAAGATTGAGTGA
261 TCACAAGATTGAGTGA
81764 GATTCATTTCTGGTTCGGGGACGGGGCGAGCAAAACCCGCCCCGAACCCGACCCGTCCTATTGAA
1 GATTCATTTCTGGTTCGGGGACGGGGCGAGCAAAACCCGCCCCGAACCCGACCCGTCCTATTGAA
**
81829 AAGAAAAATTGAGACTCTGGAGTCTATAAGTAGTAGCATTGTATATCCTATCAAACATGTTTTTG
66 AAGAAAAAAAGAGACTCTGGAGTCTATAAGTAGTAGCATTGTATATCCTATCAAACATGTTTTTG
81894 GAGAATAAGATAATGATCTTGTGACAAGTGATATCAGAATGATCCTTTAATTATTCGATTTCATG
131 GAGAATAAGATAATGATCTTGTGACAAGTGATATCAGAATGATCCTTTAATTATTCGATTTCATG
81959 TTGAGCGCCCCAATAGGTGGGATAGGTAGTGTAGACAAATGTAATAATGGTCCGTGATGAGGGCA
196 TTGAGCGCCCCAATAGGTGGGATAGGTAGTGTAGACAAATGTAATAATGGTCCGTGATGAGGGCA
82024 TCACAAGATTGAGTGA
261 TCACAAGATTGAGTGA
82040 GA
1 GA
82042 GTGAATCTCA
Statistics
Matches: 276, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
276 276 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (276 bp):
GATTCATTTCTGGTTCGGGGACGGGGCGAGCAAAACCCGCCCCGAACCCGACCCGTCCTATTGAA
AAGAAAAAAAGAGACTCTGGAGTCTATAAGTAGTAGCATTGTATATCCTATCAAACATGTTTTTG
GAGAATAAGATAATGATCTTGTGACAAGTGATATCAGAATGATCCTTTAATTATTCGATTTCATG
TTGAGCGCCCCAATAGGTGGGATAGGTAGTGTAGACAAATGTAATAATGGTCCGTGATGAGGGCA
TCACAAGATTGAGTGA
Found at i:83070 original size:170 final size:170
Alignment explanation
Indices: 82788--83100 Score: 499
Period size: 170 Copynumber: 1.8 Consensus size: 170
82778 TTCTCTACTC
* *
82788 TTATCAGATATCTTTGCATCCAGTGATGGACTGAGGACGACGAACGAAGACAATCATTTCTCTTA
1 TTATCAGATATCTTTGCATCCACTGATGGACTGAGGACGACGAAAGAAGACAATCATTTCTCTTA
82853 CAAATTTTAAATTATCATATATTTTGGATATTCACTTTGTATTTTTTATTGATAATATATTGTT-
66 CAAATTTTAAATTATCATATATTTTGGATATTCACTTTGTATTTTTTATTGATAATATATT-TTC
*
82917 ATTCTCTTAAAATTCTATAGGTTTTTTTTATTGATAATATG
130 AATCTCTTAAAATTCTATAGGTTTTTTTTATTGATAATATG
* *
82958 TTATCAGATATGTTTGCATCCACTGATGGACTGAGGACGACTAATAG-AGACAATCATTTCTCTT
1 TTATCAGATATCTTTGCATCCACTGATGGACTGAGGACGACGAA-AGAAGACAATCATTTCTCTT
* *
83022 GA-AAATTTTAAATTATCATATATTTT-TATATTCACTTTGTATTTTTTTATTGATAATATGTTT
65 -ACAAATTTTAAATTATCATATATTTTGGATATTCACTTTGTA-TTTTTTATTGATAATATATTT
83085 TCAATCTCTTAAAATT
128 TCAATCTCTTAAAATT
83101 ATCTCTTTCT
Statistics
Matches: 132, Mismatches: 7, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
169 16 0.12
170 114 0.86
171 2 0.02
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.45
Consensus pattern (170 bp):
TTATCAGATATCTTTGCATCCACTGATGGACTGAGGACGACGAAAGAAGACAATCATTTCTCTTA
CAAATTTTAAATTATCATATATTTTGGATATTCACTTTGTATTTTTTATTGATAATATATTTTCA
ATCTCTTAAAATTCTATAGGTTTTTTTTATTGATAATATG
Found at i:87016 original size:16 final size:17
Alignment explanation
Indices: 86985--87018 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
86975 GAATATTATT
*
86985 TTATTATTTATTTTAAA
1 TTATTATTTATATTAAA
87002 TTATT-TTTATATTAAA
1 TTATTATTTATATTAAA
87018 T
1 T
87019 AATAATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATTATTTATATTAAA
Found at i:87942 original size:11 final size:12
Alignment explanation
Indices: 87926--87955 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
87916 GTTTAATTTA
87926 AATTTTT-ATGT
1 AATTTTTAATGT
87937 AATTTTTAATGT
1 AATTTTTAATGT
87949 AATTTTT
1 AATTTTT
87956 TCTTAACTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (12 bp):
AATTTTTAATGT
Found at i:91884 original size:55 final size:54
Alignment explanation
Indices: 91824--91966 Score: 205
Period size: 55 Copynumber: 2.6 Consensus size: 54
91814 GACATTCAAG
* * *
91824 TGATTCATTAAGAAGGACATCCGATGAATGAAGAAATTTGAACCTGATTGAAGAA
1 TGATTCATGAAGAAGGACATCCGATGAATGAAGAAATCTGAAACTGATTGAAG-A
* *
91879 TGATTCATGAAGATGGACATCCAATGAATGAAGAAATCTGAAACTGATTGAAGA
1 TGATTCATGAAGAAGGACATCCGATGAATGAAGAAATCTGAAACTGATTGAAGA
* *
91933 TCGATCCATGAAGAAAGACATCCGATGAATGAAG
1 T-GATTCATGAAGAAGGACATCCGATGAATGAAG
91967 TTTGAAGTTG
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
54 2 0.03
55 76 0.97
ACGTcount: A:0.42, C:0.13, G:0.22, T:0.23
Consensus pattern (54 bp):
TGATTCATGAAGAAGGACATCCGATGAATGAAGAAATCTGAAACTGATTGAAGA
Found at i:98641 original size:37 final size:37
Alignment explanation
Indices: 98595--98906 Score: 173
Period size: 37 Copynumber: 8.2 Consensus size: 37
98585 TGAGATTGGG
* *
98595 GCAAGTCAATCTTAAGCCTTCACCAAAGAGTAGTGAA
1 GCAAATCAATCTTAAGCCTTCACTAAAGAGTAGTGAA
*
98632 GCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGAA
1 GCAAATCAATCTTAAGCCTTCACTAAAGAGTAGTGAA
* * * * * **
98669 GCAAATCCATCAGTAAGCCTTCTGAGCATGATGATTAAGT-CC
1 GCAAATCAATC-TTAAGCCTTC--A-C-TAAAGAGT-AGTGAA
* **** * * *
98711 TCCGGGCCATCTTAAGCCTTCACCAAAGAGTAGGGAA
1 GCAAATCAATCTTAAGCCTTCACTAAAGAGTAGTGAA
*
98748 GCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGAA
1 GCAAATCAATCTTAAGCCTTCACTAAAGAGTAGTGAA
* ** * * * *
98785 ACAAATTTATCAGTAAGCCTTC-CGAGCATGA-T-GATTAA
1 GCAAATCAATC-TTAAGCCTTCACTA--AAGAGTAG-TGAA
*** * *
98823 GTCCTCTGGGCCATCTTAAGCCTTCACTGAAGAGTAGTGAA
1 G-CAAAT---CAATCTTAAGCCTTCACTAAAGAGTAGTGAA
* *
98864 GCAAATCAATCTTAAGCCTTCACTGAAGAGTAATGAA
1 GCAAATCAATCTTAAGCCTTCACTAAAGAGTAGTGAA
98901 GCAAAT
1 GCAAAT
98907 TTATCAGTAA
Statistics
Matches: 202, Mismatches: 55, Indels: 36
0.69 0.19 0.12
Matches are distributed among these distances:
36 2 0.01
37 121 0.60
38 23 0.11
39 6 0.03
40 6 0.03
41 24 0.12
42 17 0.08
43 3 0.01
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (37 bp):
GCAAATCAATCTTAAGCCTTCACTAAAGAGTAGTGAA
Found at i:98812 original size:116 final size:116
Alignment explanation
Indices: 98603--98963 Score: 632
Period size: 116 Copynumber: 3.1 Consensus size: 116
98593 GGGCAAGTCA
98603 ATCTTAAGCCTTCACCAAAGAGTAGTGAAGCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGA
1 ATCTTAAGCCTTCACCAAAGAGTAGTGAAGCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGA
**
98668 AGCAAATCCATCAGTAAGCCTTCTGAGCATGATGATTAAGTCCTCCGGGCC
66 AGCAAATTTATCAGTAAGCCTTCTGAGCATGATGATTAAGTCCTCCGGGCC
*
98719 ATCTTAAGCCTTCACCAAAGAGTAGGGAAGCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGA
1 ATCTTAAGCCTTCACCAAAGAGTAGTGAAGCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGA
* * *
98784 AACAAATTTATCAGTAAGCCTTCCGAGCATGATGATTAAGTCCTCTGGGCC
66 AGCAAATTTATCAGTAAGCCTTCTGAGCATGATGATTAAGTCCTCCGGGCC
** *
98835 ATCTTAAGCCTTCACTGAAGAGTAGTGAAGCAAATCAATCTTAAGCCTTCACTGAAGAGTAATGA
1 ATCTTAAGCCTTCACCAAAGAGTAGTGAAGCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGA
*
98900 AGCAAATTTATCAGTAAGCCTTCTGAGCATGATGATTAAGTTCTCCGGGCC
66 AGCAAATTTATCAGTAAGCCTTCTGAGCATGATGATTAAGTCCTCCGGGCC
98951 ATCTTAAGCCTTC
1 ATCTTAAGCCTTC
98964 TGAGCATGAT
Statistics
Matches: 231, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
116 231 1.00
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (116 bp):
ATCTTAAGCCTTCACCAAAGAGTAGTGAAGCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGA
AGCAAATTTATCAGTAAGCCTTCTGAGCATGATGATTAAGTCCTCCGGGCC
Found at i:98971 original size:41 final size:41
Alignment explanation
Indices: 98914--99004 Score: 164
Period size: 41 Copynumber: 2.2 Consensus size: 41
98904 AATTTATCAG
*
98914 TAAGCCTTCTGAGCATGATGATTAAGTTCTCCGGGCCATCT
1 TAAGCCTTCTGAGCATGATGATTAAGTCCTCCGGGCCATCT
*
98955 TAAGCCTTCTGAGCATGATGATTAAGTCCTCCGGGTCATCT
1 TAAGCCTTCTGAGCATGATGATTAAGTCCTCCGGGCCATCT
98996 TAAGCCTTC
1 TAAGCCTTC
99005 ACTGAAGAGT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.22, C:0.25, G:0.21, T:0.32
Consensus pattern (41 bp):
TAAGCCTTCTGAGCATGATGATTAAGTCCTCCGGGCCATCT
Found at i:98977 original size:157 final size:157
Alignment explanation
Indices: 98798--99120 Score: 529
Period size: 157 Copynumber: 2.1 Consensus size: 157
98788 AATTTATCAG
*
98798 TAAGCCTTCCGAGCATGATGATTAAGTCCTCTGGGCCATCTTAAGCCTTCACTGAAGAGTAGTGA
1 TAAGCCTTCCGAGCATGATGATTAAGTCCTCCGGGCCATCTTAAGCCTTCACTGAAGAGTAGTGA
* * *
98863 AGCAAATCAATCTTAAGCCTTCACTGAAGAGTAATGAAGCAAATTTATCAGTAAGCCTTCTGAGC
66 AACAAATCAATCTTAAGCCTTCACTGAAGAATAATGAAGCAAATTTATCAGTAAGCCTTCCGAGC
* **
98928 ATGATGATTAAGTTCTCCGGGCCATCT
131 ATGATGATTAAGTCCTCCGAACCATCT
* *
98955 TAAGCCTTCTGAGCATGATGATTAAGTCCTCCGGGTCATCTTAAGCCTTCACTGAAGAGTAGTGA
1 TAAGCCTTCCGAGCATGATGATTAAGTCCTCCGGGCCATCTTAAGCCTTCACTGAAGAGTAGTGA
* * *
99020 AACAAATCAATTTTAAGCCTTCACTGAATAATAGTGAAGCAAATTTATCAGTAAGCCTTCCGAGC
66 AACAAATCAATCTTAAGCCTTCACTGAAGAATAATGAAGCAAATTTATCAGTAAGCCTTCCGAGC
*
99085 ATGATGATTAAGTCCTCCGAACCATTT
131 ATGATGATTAAGTCCTCCGAACCATCT
99112 TAAGCCTTC
1 TAAGCCTTC
99121 ACCGAAGAGT
Statistics
Matches: 153, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
157 153 1.00
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.29
Consensus pattern (157 bp):
TAAGCCTTCCGAGCATGATGATTAAGTCCTCCGGGCCATCTTAAGCCTTCACTGAAGAGTAGTGA
AACAAATCAATCTTAAGCCTTCACTGAAGAATAATGAAGCAAATTTATCAGTAAGCCTTCCGAGC
ATGATGATTAAGTCCTCCGAACCATCT
Found at i:99079 original size:232 final size:229
Alignment explanation
Indices: 98607--99030 Score: 544
Period size: 232 Copynumber: 1.8 Consensus size: 229
98597 AAGTCAATCT
*
98607 TAAGCCTTCACCAAAGAGTAGTGAAGCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGAAGCA
1 TAAGCCTTCACCAAAGAGTAGTGAAGCAAATCAATCTTAAGCCTTCACTGAAGAGTAATGAAGCA
98672 AATCCATCAGTAAGCCTTCTGAGCATGATGATTAAGTCCTCCGGGCCATCTTAAGCCTTCACCAA
66 AATCCATCAGTAAGCCTTCTGAGCATGATGATTAAGTCCTCCGGGCCATCTTAAGCCTTCACCAA
* * **
98737 AGAGTAGGGAAGCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGAAACAAATTTATCAGTAAG
131 AGAGTAGGCAACCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGAAACAAATCAATCAGTAAG
* * *** *
98802 CCTTCCGAGCATGATGATTAAGTCCTCTGGGCCATCT
196 CCTTCCGA-CATAATGATGAAGTCAAAT--GCCATCG
**
98839 TAAGCCTTCACTGAAGAGTAGTGAAGCAAATCAATCTTAAGCCTTCACTGAAGAGTAATGAAGCA
1 TAAGCCTTCACCAAAGAGTAGTGAAGCAAATCAATCTTAAGCCTTCACTGAAGAGTAATGAAGCA
** * *
98904 AATTTATCAGTAAGCCTTCTGAGCATGATGATTAAGTTCTCCGGGCCATCTTAAGCCTTCTGAGC
66 AATCCATCAGTAAGCCTTCTGAGCATGATGATTAAGTCCTCCGGGCCATCTTAAGCCTTC--ACC
* * * ** ***
98969 ATGATGATTAAGTCCTCCGGGTC-ATCTTAAGCCTTCACTGAAGAGTAGTGAAACAAATCAAT
129 A--AAGAGT-AGGCAACCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGAAACAAATCAAT
99031 TTTAAGCCTT
Statistics
Matches: 168, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
232 119 0.71
234 3 0.02
236 41 0.24
237 5 0.03
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.26
Consensus pattern (229 bp):
TAAGCCTTCACCAAAGAGTAGTGAAGCAAATCAATCTTAAGCCTTCACTGAAGAGTAATGAAGCA
AATCCATCAGTAAGCCTTCTGAGCATGATGATTAAGTCCTCCGGGCCATCTTAAGCCTTCACCAA
AGAGTAGGCAACCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGAAACAAATCAATCAGTAAG
CCTTCCGACATAATGATGAAGTCAAATGCCATCG
Found at i:99083 original size:273 final size:273
Alignment explanation
Indices: 98682--99179 Score: 816
Period size: 273 Copynumber: 1.8 Consensus size: 273
98672 AATCCATCAG
98682 TAAGCCTTCTGAGCATGATGATTAAGTCCTCCGGGCCATCTTAAGCCTTCACCAAAGAGTAGGGA
1 TAAGCCTTCTGAGCATGATGATTAAGTCCTCCGGGCCATCTTAAGCCTTCACCAAAGAGTAGGGA
* *
98747 AGCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGAAACAAATTTATCAGTAAGCCTTCCGAGC
66 AACAAATCAATCTTAAGCCTTCACTGAAGAATAGTGAAACAAATTTATCAGTAAGCCTTCCGAGC
* ** *
98812 ATGATGATTAAGTCCTCTGGGCCATCTTAAGCCTTCACTGAAGAGTAGTGAAGCAAATCAATCTT
131 ATGATGATTAAGTCCTCCGAACCATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATCAATCTT
*
98877 AAGCCTTCACTGAAGAGTAATGAAGCAAATTTATCAGTAAGCCTTCTGAGCATGATGATTAAGTT
196 AAGCCTTCACCGAAGAGTAATGAAGCAAATTTATCAGTAAGCCTTCTGAGCATGATGATTAAGTT
98942 CTCCGGGCCATCT
261 CTCCGGGCCATCT
* ** *
98955 TAAGCCTTCTGAGCATGATGATTAAGTCCTCCGGGTCATCTTAAGCCTTCACTGAAGAGTAGTGA
1 TAAGCCTTCTGAGCATGATGATTAAGTCCTCCGGGCCATCTTAAGCCTTCACCAAAGAGTAGGGA
* * *
99020 AACAAATCAATTTTAAGCCTTCACTGAATAATAGTGAAGCAAATTTATCAGTAAGCCTTCCGAGC
66 AACAAATCAATCTTAAGCCTTCACTGAAGAATAGTGAAACAAATTTATCAGTAAGCCTTCCGAGC
* * *
99085 ATGATGATTAAGTCCTCCGAACCATTTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATCCATTTT
131 ATGATGATTAAGTCCTCCGAACCATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATCAATCTT
* * *
99150 AAGGCTTCACCGAAGAGTAGTGGAGCAAAT
196 AAGCCTTCACCGAAGAGTAATGAAGCAAAT
99180 CCATCTTAAG
Statistics
Matches: 205, Mismatches: 20, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
273 205 1.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (273 bp):
TAAGCCTTCTGAGCATGATGATTAAGTCCTCCGGGCCATCTTAAGCCTTCACCAAAGAGTAGGGA
AACAAATCAATCTTAAGCCTTCACTGAAGAATAGTGAAACAAATTTATCAGTAAGCCTTCCGAGC
ATGATGATTAAGTCCTCCGAACCATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATCAATCTT
AAGCCTTCACCGAAGAGTAATGAAGCAAATTTATCAGTAAGCCTTCTGAGCATGATGATTAAGTT
CTCCGGGCCATCT
Found at i:99100 original size:116 final size:116
Alignment explanation
Indices: 98955--99179 Score: 333
Period size: 116 Copynumber: 1.9 Consensus size: 116
98945 CGGGCCATCT
* *** *
98955 TAAGCCTTCTGAGCATGATGATTAAGTCCTCCGGGTCATCTTAAGCCTTCACTGAAGAGTAGTGA
1 TAAGCCTTCCGAGCATGATGATTAAGTCCTCCGAACCATCTTAAGCCTTCACCGAAGAGTAGTGA
* *
99020 AACAAATCAATTTTAAGCCTTCACTGAATAATAGTGAAGCAAATTTATCAG
66 AACAAATCAATTTTAAGCCTTCACCGAAGAATAGTGAAGCAAATTTATCAG
*
99071 TAAGCCTTCCGAGCATGATGATTAAGTCCTCCGAACCATTTTAAGCCTTCACCGAAGAGTAGTGA
1 TAAGCCTTCCGAGCATGATGATTAAGTCCTCCGAACCATCTTAAGCCTTCACCGAAGAGTAGTGA
* * * * *
99136 AGCAAATCCATTTTAAGGCTTCACCGAAGAGTAGTGGAGCAAAT
66 AACAAATCAATTTTAAGCCTTCACCGAAGAATAGTGAAGCAAAT
99180 CCATCTTAAG
Statistics
Matches: 96, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
116 96 1.00
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (116 bp):
TAAGCCTTCCGAGCATGATGATTAAGTCCTCCGAACCATCTTAAGCCTTCACCGAAGAGTAGTGA
AACAAATCAATTTTAAGCCTTCACCGAAGAATAGTGAAGCAAATTTATCAG
Found at i:99151 original size:37 final size:37
Alignment explanation
Indices: 99106--99216 Score: 159
Period size: 37 Copynumber: 3.0 Consensus size: 37
99096 GTCCTCCGAA
99106 CCATTTTAAGCCTTCACCGAAGAGTAGTGAAGCAAAT
1 CCATTTTAAGCCTTCACCGAAGAGTAGTGAAGCAAAT
* *
99143 CCATTTTAAGGCTTCACCGAAGAGTAGTGGAGCAAAT
1 CCATTTTAAGCCTTCACCGAAGAGTAGTGAAGCAAAT
* * * * *
99180 CCATCTTAAGCATTCACCGAAAAGTAATGAAACAAAT
1 CCATTTTAAGCCTTCACCGAAGAGTAGTGAAGCAAAT
99217 TGAACTCGAG
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.23
Consensus pattern (37 bp):
CCATTTTAAGCCTTCACCGAAGAGTAGTGAAGCAAAT
Found at i:99780 original size:6 final size:6
Alignment explanation
Indices: 99769--99796 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
99759 TCAACGGCAA
99769 AAAAAG AAAAAG AAAAAG AAAAAG AAAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAA
99797 GGGAACCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:103252 original size:55 final size:54
Alignment explanation
Indices: 103192--103334 Score: 205
Period size: 55 Copynumber: 2.6 Consensus size: 54
103182 GACATTCAAG
* * *
103192 TGATTCATGAAGAAGGACATCCGATGAATGAAGAAATTTGAACCTGATTGAAGAA
1 TGATTCATGAAGAAGGACATCCGATGAATGAAGAAATCTGAAACTGATTAAAG-A
* *
103247 TGATTCATGAAGATGGACATCCAATGAATGAAGAAATCTGAAACTGATTAAAGA
1 TGATTCATGAAGAAGGACATCCGATGAATGAAGAAATCTGAAACTGATTAAAGA
* *
103301 TCGATCCATGAAGAAAGACATCCGATGAATGAAG
1 T-GATTCATGAAGAAGGACATCCGATGAATGAAG
103335 TTTGAAGTTG
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
54 2 0.03
55 76 0.97
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.22
Consensus pattern (54 bp):
TGATTCATGAAGAAGGACATCCGATGAATGAAGAAATCTGAAACTGATTAAAGA
Found at i:105495 original size:19 final size:17
Alignment explanation
Indices: 105473--105508 Score: 54
Period size: 19 Copynumber: 2.0 Consensus size: 17
105463 ACTTTTGTAC
105473 TTGCATTTAGCATTTGCAT
1 TTGCATTTA-CA-TTGCAT
105492 TTGCATTTACATTGCAT
1 TTGCATTTACATTGCAT
105509 GTATTTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 2 0.12
19 9 0.53
ACGTcount: A:0.22, C:0.17, G:0.14, T:0.47
Consensus pattern (17 bp):
TTGCATTTACATTGCAT
Found at i:107623 original size:2 final size:2
Alignment explanation
Indices: 107616--107676 Score: 115
Period size: 2 Copynumber: 31.0 Consensus size: 2
107606 ATACCCAACA
107616 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
107658 AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT
107677 GGGTATACAA
Statistics
Matches: 58, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 57 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:110090 original size:37 final size:37
Alignment explanation
Indices: 110043--110615 Score: 287
Period size: 37 Copynumber: 14.9 Consensus size: 37
110033 GGGCAAGTCA
* *
110043 ATCTTAAGCCTTCACCAAAGAGTAGTGAAGCAAATCA
1 ATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATCC
*
110080 ATCTTAAGCCTTCACTGAAGAGTAGTGAAGCAAATCC
1 ATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATCC
* * * * *** * **
110117 ATCAGTAAGCCTTCCGAGCATGATGATTAAGT-CCTCCAGGCC
1 ATC-TTAAGCCTT-C-A-C-CGAAGAGT-AGTGAAGCAAATCC
* * *
110159 ATCTTAAGCCTTCACCAAAGAGTAGGGAAGCAAATCA
1 ATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATCC
* **
110196 ATCTTAAGCCTTCACTGAAGAGTAGTGAAGCAAATTT
1 ATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATCC
* * ***
110233 ATCAGTAAGCCTT--CCG-AGCA-TGATGATTAAGTCCTCTGGGCC
1 ATC-TTAAGCCTTCACCGAAG-AGT-A-G-TGAAG-CAAAT---CC
* *
110275 ATCTTAAGCCTTCACTGAAGAGTAGTGAAGCAAATCA
1 ATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATCC
* * **
110312 ATCTTAAGCCTTCACTGAAGAGTAATGAAGCAAATTT
1 ATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATCC
* * * * * *** ****
110349 ATCAGTAAACCTTCTGAGCATGATGATTAAGT-CCTCCGGGCC
1 ATC-TTAAGCCTTC--A-C-CGAAGAGT-AGTGAAGCAAATCC
* *
110391 ATCTTAAGCCTTCACTGAAGAGTAGTGAAGCAAATCA
1 ATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATCC
* * * **
110428 ATTTTAAGCCTTCACTGAAGAATAGTGAAGCAAATTT
1 ATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATCC
* * * * *** ** *
110465 ATCAGTAAGCCTTCCGAGCATGATGATTAAGT-CCTCCGAGCC
1 ATC-TTAAGCCTT-C-A-C-CGAAGAGT-AGTGAAGCAAATCC
*
110507 ATTTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATCC
1 ATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATCC
* * *
110544 ATTTTAAGCCTTCACCGAAGAGTAGTGGAGCAAATCT
1 ATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATCC
110581 ATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAAT
1 ATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAAT
110616 TGAACTCGAG
Statistics
Matches: 397, Mismatches: 105, Indels: 68
0.70 0.18 0.12
Matches are distributed among these distances:
35 3 0.01
36 12 0.03
37 238 0.60
38 39 0.10
39 7 0.02
40 7 0.02
41 39 0.10
42 37 0.09
43 12 0.03
44 3 0.01
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (37 bp):
ATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATCC
Found at i:110247 original size:116 final size:116
Alignment explanation
Indices: 110043--110593 Score: 897
Period size: 116 Copynumber: 4.8 Consensus size: 116
110033 GGGCAAGTCA
*
110043 ATCTTAAGCCTTCACCAAAGAGTAGTGAAGCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGA
1 ATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGA
** *
110108 AGCAAATCCATCAGTAAGCCTTCCGAGCATGATGATTAAGTCCTCCAGGCC
66 AGCAAATTTATCAGTAAGCCTTCCGAGCATGATGATTAAGTCCTCCGGGCC
* *
110159 ATCTTAAGCCTTCACCAAAGAGTAGGGAAGCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGA
1 ATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGA
*
110224 AGCAAATTTATCAGTAAGCCTTCCGAGCATGATGATTAAGTCCTCTGGGCC
66 AGCAAATTTATCAGTAAGCCTTCCGAGCATGATGATTAAGTCCTCCGGGCC
* *
110275 ATCTTAAGCCTTCACTGAAGAGTAGTGAAGCAAATCAATCTTAAGCCTTCACTGAAGAGTAATGA
1 ATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGA
* *
110340 AGCAAATTTATCAGTAAACCTTCTGAGCATGATGATTAAGTCCTCCGGGCC
66 AGCAAATTTATCAGTAAGCCTTCCGAGCATGATGATTAAGTCCTCCGGGCC
* * *
110391 ATCTTAAGCCTTCACTGAAGAGTAGTGAAGCAAATCAATTTTAAGCCTTCACTGAAGAATAGTGA
1 ATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGA
*
110456 AGCAAATTTATCAGTAAGCCTTCCGAGCATGATGATTAAGTCCTCCGAGCC
66 AGCAAATTTATCAGTAAGCCTTCCGAGCATGATGATTAAGTCCTCCGGGCC
* * * * *
110507 ATTTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATCCATTTTAAGCCTTCACCGAAGAGTAGTGG
1 ATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGA
* *
110572 AGCAAATCTATC-TTAAGCCTTC
66 AGCAAATTTATCAGTAAGCCTTC
110594 ACCGAAGAGT
Statistics
Matches: 409, Mismatches: 26, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
115 9 0.02
116 400 0.98
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (116 bp):
ATCTTAAGCCTTCACCGAAGAGTAGTGAAGCAAATCAATCTTAAGCCTTCACTGAAGAGTAGTGA
AGCAAATTTATCAGTAAGCCTTCCGAGCATGATGATTAAGTCCTCCGGGCC
Found at i:113843 original size:90 final size:92
Alignment explanation
Indices: 113602--113850 Score: 269
Period size: 95 Copynumber: 2.7 Consensus size: 92
113592 TCGTGTAATT
* * *
113602 TTTAGTCTAATATTTATTTTTAATT-TAAAT-TATAATTATTATACTATTTATTATGATTTTACA
1 TTTAGTTTAATATTT-TTTTT-ATTGTAAATATA-AATTATTAGACTATTTATTTTGATTTTACA
* ** * *
113665 TATTAAGTTGTATTTGATTTGTTTGGTAAG
63 TATTAAATCATATTTGAGTGGTTTGGTAAG
* *
113695 TTTAGTTTAAAATATTTTTTTTATTG-AGTAATATAAATTATT-GAAGTATTTATCTTGATTTTA
1 TTTAGTTT--AATATTTTTTTTATTGTA--AATATAAATTATTAG-ACTATTTATTTTGATTTTA
113758 CATATTAAATCATATTTGAGTGGTTTGGTAAG
61 CATATTAAATCATATTTGAGTGGTTTGGTAAG
*
113790 TTTAGTTT-A-A-TTTTTTTATTGTAAATATAAATTAATTAGACTATTTATTTTGATTTAACAT
1 TTTAGTTTAATATTTTTTTTATTGTAAATATAAATT-ATTAGACTATTTATTTTGATTTTACAT
113851 TTTTTTGTTT
Statistics
Matches: 133, Mismatches: 13, Indels: 23
0.79 0.08 0.14
Matches are distributed among these distances:
89 10 0.08
90 33 0.25
91 3 0.02
92 1 0.01
93 11 0.08
94 5 0.04
95 68 0.51
96 2 0.02
ACGTcount: A:0.33, C:0.03, G:0.10, T:0.54
Consensus pattern (92 bp):
TTTAGTTTAATATTTTTTTTATTGTAAATATAAATTATTAGACTATTTATTTTGATTTTACATAT
TAAATCATATTTGAGTGGTTTGGTAAG
Found at i:115039 original size:61 final size:61
Alignment explanation
Indices: 114944--115065 Score: 235
Period size: 61 Copynumber: 2.0 Consensus size: 61
114934 TATTTTGCCT
114944 GAAGACCCCGAAATTTCTTGGAATCTTTAGCATTGTATTGTAGAAAACACCTTAGATGGAA
1 GAAGACCCCGAAATTTCTTGGAATCTTTAGCATTGTATTGTAGAAAACACCTTAGATGGAA
*
115005 GAAGACCCCGAAATTTCTTGGAATCTTTAGCATTGTATTGTAGAAAACACCTTATATGGAA
1 GAAGACCCCGAAATTTCTTGGAATCTTTAGCATTGTATTGTAGAAAACACCTTAGATGGAA
115066 AAATAACGTG
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.30
Consensus pattern (61 bp):
GAAGACCCCGAAATTTCTTGGAATCTTTAGCATTGTATTGTAGAAAACACCTTAGATGGAA
Done.