Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002701.1 Hibiscus syriacus cultivar Beakdansim tig00005577_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54443

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5008--5056
24
2.0
24
92
0
80
16
28
38
16
1.90
5244--5277
17
2.1
17
94
5
61
58
23
11
5
1.55
5347--5392
16
2.9
16
86
0
65
58
21
10
8
1.58
6459--6499
14
2.9
14
88
0
64
56
21
12
9
1.65
8516--8561
22
2.1
22
83
0
56
76
2
19
2
1.00
16449--16483
14
2.6
14
90
4
54
22
17
14
45
1.84
16807--16865
29
2.0
29
83
0
73
54
3
8
33
1.48
18868--18893
2
13.0
2
100
0
52
50
0
0
50
1.00
19518--19551
16
2.1
17
88
5
52
44
0
0
55
0.99
19877--19908
7
4.6
7
100
0
64
68
0
0
31
0.90
28814--28848
14
2.6
14
90
4
54
22
17
14
45
1.84
31205--31234
2
15.0
2
100
0
60
50
0
0
50
1.00
31863--31896
16
2.1
17
88
5
52
44
0
0
55
0.99
32221--32251
15
2.1
15
100
0
62
74
0
0
25
0.82
32221--32253
7
4.6
7
92
7
57
69
0
0
30
0.88
40903--40975
36
2.0
36
97
0
137
20
24
38
16
1.93
41088--41121
17
2.0
17
100
0
68
23
47
0
29
1.52
41622--41665
21
2.1
21
91
0
70
29
0
15
54
1.42
42067--42106
14
2.9
14
100
0
80
7
10
15
67
1.41
42179--42238
17
3.3
17
72
17
57
38
0
11
50
1.39
42474--42538
26
2.6
25
79
13
62
50
6
1
41
1.36
45555--45589
17
2.0
18
94
5
63
57
0
5
37
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45791--45822
12
2.7
12
95
0
55
53
0
3
43
1.16
45764--45822
23
2.5
22
84
13
66
49
1
6
42
1.39
45852--46049
26
8.0
26
75
14
177
46
3
6
42
1.46
45773--46058
124
2.3
122
87
7
429
46
2
6
43
1.45
45978--46052
3
25.7
3
75
5
55
53
4
1
41
1.28
45979--46049
12
5.9
11
79
14
61
52
4
1
42
1.29
46057--46145
21
4.4
20
66
17
58
41
0
13
44
1.43
46046--46450
60
7.4
58
83
14
492
41
0
11
46
1.40
46128--46450
49
6.2
48
83
14
394
41
0
11
46
1.40
46225--46251
10
2.7
10
100
0
54
40
0
18
40
1.51
46046--46452
166
2.5
166
91
5
645
42
0
11
46
1.39
46046--46627
215
2.6
219
84
11
703
41
1
11
45
1.50
46374--46452
24
3.5
22
70
20
72
40
0
11
48
1.39
46513--46598
21
4.2
20
66
18
52
43
0
11
45
1.40
46506--46602
11
8.1
12
71
20
62
44
0
11
44
1.40
46513--46627
60
1.9
60
98
0
221
42
0
10
46
1.38
47516--47560
23
2.0
23
86
0
63
55
2
2
40
1.24
48844--48892
22
2.2
22
88
0
80
36
14
4
44
1.64
49145--49238
29
3.0
29
79
11
98
50
8
0
41
1.33
49144--49198
18
3.4
18
65
31
52
52
9
0
38
1.33
49150--49248
29
3.1
31
75
17
87
48
8
0
43
1.32
49768--49825
28
2.1
28
93
0
98
44
25
27
1
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49829--49998
29
5.9
29
91
2
254
20
27
35
15
1.93
52595--52640
23
2.0
23
91
0
74
30
30
21
17
1.96

Tables:   1

The End!