genome.fa.s2702.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002702.1 Hibiscus syriacus cultivar Beakdansim tig00005578_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  162557

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7581--7775	98	2.0	101	92	4	333	38	13	9	37	1.78
10918--10949	17	1.9	16	93	6	55	40	0	6	53	1.26
12118--12152	17	2.1	17	94	0	61	31	0	31	37	1.58
14417--14461	23	2.0	23	95	0	81	26	20	26	26	1.99
17028--17091	30	2.3	30	78	10	73	45	0	0	54	0.99
18641--18750	48	2.3	48	78	9	134	23	6	48	21	1.73
19082--19125	13	3.5	13	81	6	63	36	27	9	27	1.87
19095--19186	11	7.8	12	71	7	64	29	21	14	34	1.93
19082--19186	23	4.4	23	90	3	131	30	22	13	33	1.93
21435--21462	11	2.5	11	100	0	56	17	28	35	17	1.93
22992--23041	25	2.0	25	88	3	75	40	38	8	14	1.75
23016--23173	44	3.6	44	87	2	221	32	36	13	17	1.89
41284--41327	5	8.8	5	97	0	79	15	40	40	2	1.60
41328--41393	6	11.0	6	100	0	132	0	16	50	33	1.46
41390--41414	6	4.2	6	100	0	50	32	0	32	36	1.58
47203--47248	6	7.7	6	100	0	92	0	15	50	34	1.44
47514--47568	22	2.5	22	75	0	56	29	9	23	38	1.85
48319--48488	86	2.0	86	91	0	277	38	16	17	27	1.91
60323--60372	25	2.0	25	100	0	100	40	8	0	52	1.31
64735--65028	59	5.0	59	94	0	498	32	19	11	37	1.87
64733--65041	119	2.6	119	93	1	521	31	20	11	36	1.88
68209--68252	19	2.3	19	80	0	52	43	9	18	29	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71173--71207	18	2.0	17	88	5	52	14	8	0	77	0.99
72740--72784	21	2.1	21	83	0	54	31	26	26	15	1.96
73460--73571	31	3.6	31	92	0	188	18	18	22	40	1.92
77369--77493	62	2.0	62	89	3	189	20	18	22	38	1.93
77369--77477	31	3.5	31	97	0	200	19	19	22	39	1.93
87157--87190	17	2.1	16	88	5	50	14	8	0	76	1.01
88143--88200	18	3.1	19	70	9	64	20	22	25	31	1.98
94199--94240	21	2.0	21	90	0	66	28	23	19	28	1.98
94264--94315	19	2.7	19	91	5	79	32	17	28	21	1.96
94949--95006	18	3.1	19	80	9	82	18	22	29	29	1.98
97000--97060	23	2.7	23	89	0	95	27	27	26	18	1.98
100954--100997	23	1.9	23	85	0	61	36	22	22	18	1.95
100964--101022	23	2.6	23	86	0	82	30	27	25	16	1.97
105986--106044	23	2.6	23	88	0	82	28	25	27	18	1.98
108816--108889	19	4.1	19	79	5	82	43	10	18	27	1.83
108931--108970	12	3.4	11	89	10	53	50	2	17	30	1.59
111755--111802	21	2.3	21	85	0	60	20	0	33	45	1.52
111763--111804	7	6.0	7	97	0	75	16	0	40	42	1.48
121582--121614	2	16.5	2	100	0	66	48	0	0	51	1.00
123714--123754	20	2.0	21	85	4	57	58	2	2	36	1.24
123782--123817	19	1.9	19	94	5	65	72	5	0	22	1.05
125192--125271	3	26.7	3	97	0	151	65	1	0	33	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125406--128045	113	23.4	111	84	7	2561	29	19	13	36	1.91
125406--127229	117	15.9	112	87	7	2188	30	20	13	36	1.91
125406--128080	690	3.9	682	83	9	3239	29	19	13	36	1.91
127410--128073	112	5.9	113	88	3	957	28	20	14	37	1.91
127416--128078	337	2.0	336	95	0	1182	27	20	14	37	1.91
128482--128555	22	3.4	22	88	0	103	37	12	12	37	1.80
128479--128561	22	3.8	22	81	9	98	38	12	13	36	1.82
135761--135814	14	3.8	14	82	9	56	50	9	14	25	1.73
137395--137483	28	3.2	28	67	28	64	66	3	4	25	1.26
138160--138200	20	2.0	21	85	4	57	58	2	2	36	1.24
138228--138262	18	1.9	18	88	11	54	71	5	0	22	1.07
139633--139721	3	29.7	3	93	0	151	62	1	2	33	1.15
139817--139889	30	2.5	29	82	12	96	38	5	0	56	1.23
139921--140040	29	4.3	29	77	9	97	57	1	3	37	1.25
139961--140022	22	2.7	23	85	7	72	61	1	1	35	1.16
139937--140040	25	3.8	27	77	10	86	60	0	2	35	1.18
140060--140136	30	2.6	30	85	0	91	49	1	9	40	1.43
140130--140234	32	3.4	32	82	5	121	56	0	6	37	1.26
145630--145716	40	2.2	40	95	0	156	47	10	6	35	1.65
145818--145866	21	2.3	21	96	0	89	18	10	38	32	1.84
148314--148475	80	2.0	80	96	0	297	39	16	15	28	1.89
153486--153560	35	2.1	35	82	4	89	38	22	24	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
157137--157169	16	2.1	16	100	0	66	15	0	6	78	0.93
157285--157314	16	1.9	15	93	6	51	70	6	0	23	1.11
157324--157368	21	2.1	21	88	8	65	62	2	0	35	1.08
157910--157954	22	2.0	22	95	0	81	42	22	11	24	1.86

Tables:   1

The End!