Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002703.1 Hibiscus syriacus cultivar Beakdansim tig00005579_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102437

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10546--10593
13
3.7
13
94
0
87
33
18
20
27
1.96
10403--10567
84
2.0
85
92
1
278
30
17
21
30
1.96
10539--10593
26
2.1
26
89
0
83
36
16
20
27
1.93
13756--13819
19
3.2
20
72
14
53
43
1
1
53
1.19
13765--13814
20
2.5
20
78
12
59
40
2
2
56
1.22
13732--13818
31
2.8
30
79
10
95
41
1
3
54
1.25
16006--16091
29
3.0
29
96
0
154
41
12
20
24
1.87
17813--17990
60
3.0
60
75
9
168
33
17
5
42
1.73
18126--18302
60
2.9
61
78
9
150
42
6
20
31
1.77
18481--18513
16
2.1
16
88
11
50
6
6
33
54
1.50
26142--26186
23
2.0
23
90
0
72
51
13
8
26
1.70
27546--27598
24
2.2
24
93
0
88
35
7
20
35
1.81
27928--27954
6
4.5
6
100
0
54
33
14
0
51
1.43
28453--28554
6
17.0
6
90
0
69
0
50
0
49
1.00
28449--28554
9
11.8
9
85
0
59
0
50
0
49
1.00
28474--28538
3
21.7
3
96
0
94
0
60
0
40
0.97
28462--28547
36
2.4
36
98
0
163
0
53
0
46
1.00
30575--30633
29
2.0
29
96
0
109
25
11
13
49
1.76
30584--30641
29
2.0
29
86
3
82
31
10
15
43
1.80
35262--35349
29
3.0
29
98
0
167
23
12
13
50
1.76
39919--39957
11
3.4
11
83
13
51
71
2
17
7
1.21
41398--41456
25
2.4
25
94
0
100
16
30
3
49
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43155--43189
18
1.9
18
100
0
70
40
22
11
25
1.88
43907--44136
37
6.2
37
74
15
174
46
4
6
42
1.52
44128--44172
16
2.6
17
79
10
56
40
0
6
53
1.27
45488--45545
12
5.0
11
76
17
55
13
10
0
75
1.04
45581--45612
3
10.7
3
100
0
64
31
0
0
68
0.90
46612--46644
17
1.9
17
93
0
57
6
12
9
72
1.26
50696--51853
84
13.9
84
84
3
1397
29
25
19
24
1.99
52427--52776
37
9.4
37
72
16
226
44
3
7
44
1.50
52603--52693
35
2.7
34
83
8
107
47
8
6
37
1.61
52688--52732
15
2.6
18
76
20
51
37
0
8
53
1.32
54070--54133
12
5.5
11
77
19
51
15
6
0
78
0.95
54070--54134
22
2.9
22
74
19
62
16
6
0
76
0.97
54144--54172
3
9.7
3
100
0
58
31
0
0
68
0.89
55432--55492
3
19.0
3
90
9
70
31
0
0
68
0.89
55434--55458
4
6.2
4
100
0
50
24
0
0
76
0.80
55433--55492
23
2.5
24
84
15
79
31
0
0
68
0.90
55432--55492
20
2.9
21
88
11
81
31
0
0
68
0.89
62460--62522
28
2.3
27
75
20
67
25
3
15
55
1.55
62633--62697
25
2.6
25
92
2
103
44
38
7
9
1.65
75767--75804
16
2.4
16
95
0
67
13
15
21
50
1.78
76284--76334
2
25.5
2
95
0
93
52
0
0
47
1.00
76354--76510
85
1.8
85
93
0
269
32
17
20
29
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
77385--77422
20
1.9
20
89
10
60
36
13
5
44
1.66
78744--78783
11
3.5
11
83
6
53
25
0
5
70
1.08
82301--82561
132
2.0
132
92
0
432
26
14
9
50
1.73
93276--93322
18
2.6
18
93
0
76
29
14
27
27
1.96
93922--94018
24
4.1
24
81
7
101
21
21
24
31
1.98
95158--95201
17
2.6
17
96
0
79
56
11
18
13
1.66
95537--95684
79
1.9
79
88
0
224
33
16
20
29
1.95
95770--95918
76
1.9
77
84
1
201
32
17
18
31
1.94
95866--96017
79
1.9
80
83
1
198
37
18
15
28
1.92
99903--99947
22
2.0
22
91
0
72
6
11
24
57
1.57
100122--100169
24
2.0
24
84
8
62
6
8
14
70
1.31

Tables:   1

The End!