Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002707.1 Hibiscus syriacus cultivar Beakdansim tig00005587_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95446

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73--97
2
12.5
2
100
0
50
48
0
0
52
1.00
7423--7465
18
2.4
18
100
0
86
11
53
25
9
1.67
7502--7557
29
1.9
29
85
0
76
26
8
23
41
1.84
7531--7607
39
2.0
38
85
7
102
29
6
20
42
1.77
7500--7627
68
1.9
68
83
6
170
31
6
21
41
1.77
13650--13683
15
2.3
15
89
0
50
41
0
8
50
1.34
13812--13870
15
3.8
15
82
8
73
23
32
27
16
1.96
13814--13882
15
4.3
16
80
10
70
23
31
27
17
1.97
13814--13882
32
2.2
32
89
0
102
23
31
27
17
1.97
15213--15250
13
2.9
13
92
0
67
15
47
21
15
1.82
15214--15274
31
2.0
31
83
6
79
19
42
19
18
1.89
15287--15450
88
1.9
88
84
0
220
32
3
18
45
1.67
15324--15466
29
4.9
29
73
3
108
34
3
18
43
1.68
18630--18656
13
2.1
13
100
0
54
51
14
33
0
1.43
23181--23217
3
12.3
3
100
0
74
32
0
0
67
0.91
26275--26299
5
5.0
5
100
0
50
0
20
60
20
1.37
32477--32553
7
11.4
7
91
8
133
44
0
55
0
0.99
37317--37388
31
2.3
31
82
0
90
19
13
15
51
1.76
39607--39809
30
6.8
30
74
10
166
56
8
14
20
1.65
39612--39809
89
2.2
90
78
7
206
56
9
14
20
1.65
43359--43434
36
2.1
36
85
7
100
47
1
3
47
1.29
44874--44916
2
21.5
2
100
0
86
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45598--45624
12
2.2
12
100
0
54
77
0
0
22
0.76
45752--45792
21
2.0
21
95
0
73
51
0
4
43
1.23
46473--46540
30
2.3
29
90
5
102
50
4
8
36
1.54
46722--46746
4
6.2
4
100
0
50
76
0
0
24
0.80
46930--46956
13
2.1
13
100
0
54
29
7
22
40
1.81
49472--49510
12
3.5
11
86
13
53
23
0
2
74
0.94
51061--51211
75
2.0
74
94
1
266
31
13
19
35
1.91
53654--53703
20
2.5
20
86
0
73
14
10
42
34
1.78
59161--59309
72
2.1
72
85
0
199
19
18
28
33
1.95
66025--66073
21
2.3
21
89
0
80
20
8
6
65
1.41
71106--71132
5
5.4
5
100
0
54
18
0
0
81
0.69
74180--74241
23
2.7
23
79
2
61
38
9
1
50
1.45
80782--80933
74
2.1
74
100
0
304
50
19
14
15
1.79
81921--81946
2
13.0
2
100
0
52
50
0
0
50
1.00
82531--82575
23
2.0
23
86
0
63
48
0
0
51
1.00
84975--85033
14
4.0
14
80
8
64
49
0
0
50
1.00
85547--85616
21
3.4
21
80
9
81
40
12
8
38
1.74
87403--87740
147
2.3
147
92
3
547
30
13
14
41
1.84
88770--88802
14
2.4
14
100
0
66
42
6
0
51
1.26
89546--89580
16
2.2
16
100
0
70
22
14
34
28
1.93
91516--91548
2
16.5
2
100
0
66
48
0
51
0
1.00

Tables:   1

The End!