Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002708.1 Hibiscus syriacus cultivar Beakdansim tig00005589_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72785

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
689--759
29
2.3
29
81
11
81
66
0
7
26
1.17
1256--1286
16
1.9
16
93
0
53
48
19
12
19
1.81
4514--4553
21
1.9
21
89
0
62
72
2
10
15
1.21
16312--17253
313
3.0
313
98
1
1811
33
13
13
39
1.84
19122--19319
108
1.8
108
97
0
378
47
14
10
26
1.77
25907--25957
20
2.5
21
75
6
52
60
1
0
37
1.08
26518--26570
23
2.3
23
83
9
63
54
13
20
11
1.69
26734--26777
2
22.0
2
95
0
79
0
52
0
47
1.00
26777--26817
2
20.5
2
100
0
82
48
0
0
51
1.00
26787--27382
305
2.0
305
92
1
1007
37
12
11
38
1.79
28038--28095
27
2.1
27
96
0
107
10
53
10
25
1.66
28207--28516
21
15.7
20
64
15
96
8
62
4
24
1.43
28235--28567
42
8.4
42
73
13
301
8
62
4
24
1.43
28211--28483
78
3.5
78
87
4
399
8
62
4
24
1.43
28315--28567
119
2.1
120
91
2
411
8
62
4
24
1.43
28425--28732
21
15.6
21
70
13
122
9
65
3
22
1.36
28434--28594
78
2.1
78
84
0
205
8
63
4
23
1.39
28544--28594
15
3.6
14
82
12
61
5
70
1
21
1.18
28428--28726
141
2.1
142
88
3
440
9
64
3
22
1.37
28516--28657
63
2.3
63
83
0
167
11
61
4
22
1.46
28549--28696
57
2.6
58
79
12
155
10
65
2
21
1.35
28653--28737
6
14.3
6
81
7
84
9
72
0
17
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32475--32545
20
3.5
20
90
0
115
33
16
16
32
1.92
37528--37571
11
4.1
12
77
22
53
54
0
0
45
0.99
38579--38616
16
2.4
15
87
12
58
31
18
7
42
1.79
39112--39688
304
1.9
302
93
0
992
36
11
12
38
1.80
40368--40424
27
2.1
27
93
0
96
12
54
8
24
1.65
40576--40995
42
10.5
41
72
14
326
8
62
4
24
1.44
40548--40995
21
21.4
21
66
15
95
8
62
4
24
1.44
40785--41025
78
3.1
78
96
1
448
10
61
4
23
1.48
40989--41028
21
1.9
21
89
0
62
15
62
2
20
1.43
41012--41073
6
10.3
6
81
10
65
11
69
0
19
1.18
43605--43939
167
2.0
168
98
1
647
45
18
11
23
1.83
44080--44351
134
2.0
133
96
3
503
28
22
18
30
1.97
47569--47612
11
4.1
12
77
22
53
54
0
0
45
0.99
48990--49023
2
17.0
2
100
0
68
50
0
0
50
1.00
49042--49073
15
2.1
15
94
0
55
31
6
9
53
1.58
49954--50009
26
2.1
27
96
3
105
10
53
10
25
1.67
50160--50405
20
13.0
19
65
24
87
7
63
4
24
1.39
50128--50438
74
4.1
77
82
12
335
8
63
3
24
1.39
50237--50384
21
7.8
20
65
25
54
7
63
4
24
1.40
50127--50393
148
1.8
146
87
6
405
7
63
4
24
1.38
50268--50325
15
3.7
15
72
20
55
6
68
1
22
1.22
50203--50517
36
8.5
33
72
21
159
8
62
4
24
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50390--50554
21
8.2
21
66
16
71
10
63
3
23
1.39
50133--50454
148
2.2
146
83
9
386
8
62
4
24
1.42
50239--50540
115
2.7
113
84
7
378
8
63
4
24
1.41
50378--50575
18
10.6
18
73
16
89
10
64
3
21
1.38
50486--50575
6
14.7
6
84
9
110
13
67
0
18
1.22
50239--50565
116
2.8
115
82
8
303
8
63
3
23
1.40
54294--54368
20
3.8
20
94
0
132
37
16
16
30
1.90
59108--59151
11
4.1
12
77
22
53
54
0
0
45
0.99
60538--60577
2
20.0
2
100
0
80
50
0
0
50
1.00
61496--61550
27
2.0
27
96
0
101
10
52
10
25
1.69
61780--61962
21
9.0
22
66
23
71
8
61
4
25
1.44
61681--62093
36
10.8
35
71
22
221
9
61
4
24
1.47
61787--62160
42
9.3
41
73
12
303
9
61
4
24
1.46
61681--61923
78
3.2
78
85
9
349
9
60
4
25
1.45
61787--62070
119
2.4
120
91
1
444
9
61
4
24
1.46
61928--62187
21
12.8
20
68
13
106
10
62
3
23
1.44
61907--62154
79
3.2
78
95
1
444
10
61
4
23
1.47
62015--62154
36
3.7
36
73
12
111
10
62
4
22
1.45
62133--62187
12
4.9
11
76
14
51
12
67
0
20
1.23
62157--62187
6
5.2
6
100
0
62
16
67
0
16
1.23
65822--65885
20
3.2
20
95
0
119
39
17
15
28
1.90
71531--71559
2
15.0
2
92
7
51
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72017--72057
2
20.5
2
100
0
82
48
0
0
51
1.00

Tables:   1

The End!