genome.fa.s2709.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002709.1 Hibiscus syriacus cultivar Beakdansim tig00005592_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76648

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13435--13509	31	2.4	31	84	6	98	45	8	16	30	1.75
16461--16521	12	5.2	12	75	11	54	34	24	4	36	1.77
18834--18875	21	2.0	20	82	13	50	47	4	7	40	1.52
25496--25555	30	2.0	30	93	6	104	33	6	16	43	1.74
25673--25702	15	2.0	15	100	0	60	26	33	26	13	1.93
25670--25723	20	3.0	20	79	20	73	25	33	29	11	1.91
25886--25925	20	1.9	22	90	10	66	37	40	10	12	1.77
26140--26209	34	2.1	32	86	5	95	31	15	30	22	1.95
27069--27116	19	2.5	19	83	12	62	54	4	12	29	1.56
28356--28415	30	2.0	30	93	6	104	33	6	16	43	1.74
28505--28569	21	3.0	21	84	8	87	21	35	26	16	1.95
28660--28702	21	2.0	21	95	0	77	23	20	27	27	1.99
28730--28769	20	1.9	21	85	10	55	37	37	10	15	1.80
28984--29053	34	2.1	32	86	5	95	31	15	30	22	1.95
34119--34171	21	2.5	21	84	0	61	30	18	16	33	1.94
37872--37930	31	1.9	31	92	0	100	40	6	10	42	1.65
37955--37997	22	2.0	22	100	0	86	51	13	0	34	1.42
37957--38005	22	2.2	22	88	3	71	55	14	0	30	1.40
37945--39136	54	21.5	54	77	12	1113	53	12	0	33	1.42
37977--39265	32	46.4	32	68	25	641	53	12	0	33	1.41
37945--38862	80	11.0	83	74	18	568	53	12	0	33	1.41
38079--38132	14	3.6	14	72	18	54	57	5	0	37	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38176--38218	22	2.0	22	100	0	86	51	13	0	34	1.42
38300--38353	14	3.6	14	72	18	54	57	3	0	38	1.17
37945--39332	221	6.3	220	92	4	2207	53	12	0	34	1.41
38340--38384	22	2.1	22	91	4	74	55	13	0	31	1.38
38396--38438	22	2.0	22	100	0	86	51	13	0	34	1.42
38398--38446	22	2.2	22	88	3	71	55	14	0	30	1.40
38454--38531	22	3.4	22	70	21	61	56	16	0	26	1.41
38621--38663	22	2.0	22	100	0	86	51	13	0	34	1.42
38745--38798	14	3.6	14	72	18	54	57	3	0	38	1.17
37945--39222	445	2.9	446	97	1	2376	53	12	0	33	1.42
38785--38830	23	2.1	22	88	8	67	56	13	0	30	1.37
38842--38884	22	2.0	22	100	0	86	51	13	0	34	1.42
38844--38892	22	2.2	22	88	3	71	55	14	0	30	1.40
38900--38977	22	3.4	22	70	21	61	56	16	0	26	1.41
39012--39054	22	2.0	22	100	0	86	51	13	0	34	1.42
39014--39062	22	2.2	22	88	3	71	55	14	0	30	1.40
39151--39267	54	2.2	54	95	0	216	53	10	0	35	1.35
39200--39302	22	4.5	22	72	7	98	53	8	0	37	1.32
39245--39347	15	6.5	15	82	15	127	53	2	0	43	1.15
39191--39347	69	2.3	67	90	5	237	53	5	0	40	1.25
39003--39332	54	6.4	50	81	13	213	52	10	0	37	1.38
57147--57234	13	6.8	13	70	18	60	42	0	2	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57101--57251	63	2.4	63	92	5	245	41	0	2	55	1.14
57147--57230	40	2.2	37	85	10	107	42	0	2	54	1.13
57158--57254	21	4.7	20	68	21	56	42	0	2	55	1.11
57245--57290	19	2.6	17	81	15	58	41	2	0	56	1.11
57820--57863	14	2.9	15	75	18	54	4	13	29	52	1.60
58191--58250	31	1.9	31	93	0	102	43	10	6	40	1.64
65081--65156	25	3.0	25	100	0	152	39	23	21	15	1.92
66056--66106	22	2.3	23	86	3	68	33	17	23	25	1.96
66067--66128	23	2.8	22	87	7	81	33	20	22	22	1.97
68792--68832	21	1.9	22	90	5	66	53	0	34	12	1.38
75906--75952	21	2.2	21	85	7	60	51	6	27	14	1.67

Tables:   1

The End!