Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002712.1 Hibiscus syriacus cultivar Beakdansim tig00005598_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92376
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Found at i:4176 original size:21 final size:21
Alignment explanation
Indices: 4143--4191 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
4133 AATATAATAT
4143 ATAACTTAAACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
* *
4164 ATAATTTATACTAACAAACTA
1 ATAACTTAAACTAACAAACTA
4185 ATTAACT
1 A-TAACT
4192 AGATTTTAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (21 bp):
ATAACTTAAACTAACAAACTA
Found at i:4807 original size:28 final size:29
Alignment explanation
Indices: 4750--4838 Score: 153
Period size: 28 Copynumber: 3.1 Consensus size: 29
4740 CCACAGCTTG
*
4750 GTCGCTGGGACTCCATGGCGACCTACCAT
1 GTCGCCGGGACTCCATGGCGACCTACCAT
4779 GTCGCCGGGACTCCAT-GCGACCTACCAT
1 GTCGCCGGGACTCCATGGCGACCTACCAT
4807 GTCGCCGGGACTCCATGGCGACCTACACAT
1 GTCGCCGGGACTCCATGGCGACCTAC-CAT
4837 GT
1 GT
4839 AAGATTTCCC
Statistics
Matches: 57, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
28 28 0.49
29 24 0.42
30 5 0.09
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.19
Consensus pattern (29 bp):
GTCGCCGGGACTCCATGGCGACCTACCAT
Found at i:5000 original size:29 final size:29
Alignment explanation
Indices: 4967--5034 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
4957 CATGCATGAA
4967 TCCTTGGTCGCCCCGAGTGCATGGCGACC
1 TCCTTGGTCGCCCCGAGTGCATGGCGACC
**** *
4996 TCCTTGGTCGTTGGGCGTGCATGGCGACC
1 TCCTTGGTCGCCCCGAGTGCATGGCGACC
5025 TCCTTGGTCG
1 TCCTTGGTCG
5035 TTGGGCGTGC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.07, C:0.32, G:0.34, T:0.26
Consensus pattern (29 bp):
TCCTTGGTCGCCCCGAGTGCATGGCGACC
Found at i:5035 original size:29 final size:29
Alignment explanation
Indices: 4983--5054 Score: 144
Period size: 29 Copynumber: 2.5 Consensus size: 29
4973 GTCGCCCCGA
4983 GTGCATGGCGACCTCCTTGGTCGTTGGGC
1 GTGCATGGCGACCTCCTTGGTCGTTGGGC
5012 GTGCATGGCGACCTCCTTGGTCGTTGGGC
1 GTGCATGGCGACCTCCTTGGTCGTTGGGC
5041 GTGCATGGCGACCT
1 GTGCATGGCGACCT
5055 ACACATGCAC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.08, C:0.28, G:0.38, T:0.26
Consensus pattern (29 bp):
GTGCATGGCGACCTCCTTGGTCGTTGGGC
Found at i:5244 original size:81 final size:81
Alignment explanation
Indices: 5109--5291 Score: 348
Period size: 81 Copynumber: 2.3 Consensus size: 81
5099 TTGGTCGGTC
*
5109 ATCCTTGGTCGCCTCGAGTGCCCCATGCATGAACCGAGCCCCGAGTGCATGGCACGATCTCCTCA
1 ATCCTTGGTCGCCTCGAGTGCCCCATGCATGAACCGAGCCCCGAGTGCATGGCACGATCTCCCCA
5174 ATCTCCCCATGCATGA
66 ATCTCCCCATGCATGA
5190 ATCCTTGGTCGCCTCGAGTGCCCCATGCATGAACCGAGCCCCGAGTGCATGGCACGATCTCCCCA
1 ATCCTTGGTCGCCTCGAGTGCCCCATGCATGAACCGAGCCCCGAGTGCATGGCACGATCTCCCCA
5255 ATCTCCCCATGCATGA
66 ATCTCCCCATGCATGA
*
5271 ATCCTTGGTCGCCCCGAGTGC
1 ATCCTTGGTCGCCTCGAGTGC
5292 ATGGAGACCT
Statistics
Matches: 100, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
81 100 1.00
ACGTcount: A:0.19, C:0.38, G:0.23, T:0.21
Consensus pattern (81 bp):
ATCCTTGGTCGCCTCGAGTGCCCCATGCATGAACCGAGCCCCGAGTGCATGGCACGATCTCCCCA
ATCTCCCCATGCATGA
Found at i:5305 original size:29 final size:29
Alignment explanation
Indices: 5272--5339 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
5262 CATGCATGAA
5272 TCCTTGGTCGCCCCGAGTGCATGGAGACC
1 TCCTTGGTCGCCCCGAGTGCATGGAGACC
**** * *
5301 TCCTTGGTCGTTGGGCGTGCATGGCGACC
1 TCCTTGGTCGCCCCGAGTGCATGGAGACC
5330 TCCTTGGTCG
1 TCCTTGGTCG
5340 TTGGGCGTGC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.09, C:0.31, G:0.34, T:0.26
Consensus pattern (29 bp):
TCCTTGGTCGCCCCGAGTGCATGGAGACC
Found at i:5340 original size:29 final size:29
Alignment explanation
Indices: 5288--5367 Score: 142
Period size: 29 Copynumber: 2.8 Consensus size: 29
5278 GTCGCCCCGA
*
5288 GTGCATGGAGACCTCCTTGGTCGTTGGGC
1 GTGCATGGCGACCTCCTTGGTCGTTGGGC
5317 GTGCATGGCGACCTCCTTGGTCGTTGGGC
1 GTGCATGGCGACCTCCTTGGTCGTTGGGC
*
5346 GTGCATGGCGACCTCTTTGGTC
1 GTGCATGGCGACCTCCTTGGTC
5368 ACTGTACAAT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 49 1.00
ACGTcount: A:0.09, C:0.26, G:0.36, T:0.29
Consensus pattern (29 bp):
GTGCATGGCGACCTCCTTGGTCGTTGGGC
Found at i:12785 original size:2 final size:2
Alignment explanation
Indices: 12772--12820 Score: 89
Period size: 2 Copynumber: 24.5 Consensus size: 2
12762 GTTCCAAACC
*
12772 TA TA TC TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
12814 TA TA TA T
1 TA TA TA T
12821 TGTAAATTTA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:13379 original size:20 final size:20
Alignment explanation
Indices: 13334--13372 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
13324 ATTATTGTAA
*
13334 TATTTTAGAATTAATAATAC
1 TATTTTAGAATGAATAATAC
*
13354 TATTTTATAATGAATAATA
1 TATTTTAGAATGAATAATA
13373 TTCTTTTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (20 bp):
TATTTTAGAATGAATAATAC
Found at i:15136 original size:21 final size:21
Alignment explanation
Indices: 15084--15124 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
15074 AGGAAGGGTG
15084 GTATCGATACTCCTAAACTGA
1 GTATCGATACTCCTAAACTGA
15105 GTATCGATACTCCTAAACTG
1 GTATCGATACTCCTAAACTG
15125 GTTATCAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (21 bp):
GTATCGATACTCCTAAACTGA
Found at i:16663 original size:57 final size:57
Alignment explanation
Indices: 16575--16682 Score: 180
Period size: 57 Copynumber: 1.9 Consensus size: 57
16565 TTGACTTTGT
16575 CCCTTTAGTGTATAATAATAAAAACAAGTTTTCATAAATTTGTAAATGAGACATTGC
1 CCCTTTAGTGTATAATAATAAAAACAAGTTTTCATAAATTTGTAAATGAGACATTGC
* * * *
16632 CCCTTTATTGTATCATAGTAAAAACAAGTTTTCATAAATTTGTCAATGAGA
1 CCCTTTAGTGTATAATAATAAAAACAAGTTTTCATAAATTTGTAAATGAGA
16683 AAATAATCAA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
57 47 1.00
ACGTcount: A:0.39, C:0.13, G:0.12, T:0.36
Consensus pattern (57 bp):
CCCTTTAGTGTATAATAATAAAAACAAGTTTTCATAAATTTGTAAATGAGACATTGC
Found at i:18255 original size:77 final size:79
Alignment explanation
Indices: 18169--18327 Score: 241
Period size: 77 Copynumber: 2.0 Consensus size: 79
18159 TTAAAATTCA
* *
18169 ATTTGCTTCATACGCAAACATTAAGATTTGAGCTCAAACTTTCCTTAAGAAAT-TAATA-TTTAT
1 ATTTGCTTCATACGCAAACATCAAGATTCGAGCTCAAACTTTCCTTAAGAAATCTAATATTTTAT
** *
18232 CCTGTTAGACTTAT
66 CCAATTAGACATAT
* *
18246 ATTTGCTTCATACGCAAACATCAAGATTCGAGTTCGAACTTTCCTTAAGAAATCTAATATTTTAT
1 ATTTGCTTCATACGCAAACATCAAGATTCGAGCTCAAACTTTCCTTAAGAAATCTAATATTTTAT
18311 CCAATTAGACATAT
66 CCAATTAGACATAT
18325 ATT
1 ATT
18328 GTTAAGCCCT
Statistics
Matches: 73, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
77 49 0.67
78 5 0.07
79 19 0.26
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.38
Consensus pattern (79 bp):
ATTTGCTTCATACGCAAACATCAAGATTCGAGCTCAAACTTTCCTTAAGAAATCTAATATTTTAT
CCAATTAGACATAT
Found at i:23110 original size:20 final size:20
Alignment explanation
Indices: 23085--23142 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
23075 TATGGGTTCG
* *
23085 AGTATCGGTATTGGGTGACC
1 AGTATCGATATTGGATGACC
23105 AGTATCGATATTGGATGACC
1 AGTATCGATATTGGATGACC
** *
23125 AACATTGATATTGGATGA
1 AGTATCGATATTGGATGA
23143 ACTATGACTA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.29, C:0.12, G:0.28, T:0.31
Consensus pattern (20 bp):
AGTATCGATATTGGATGACC
Found at i:29126 original size:20 final size:20
Alignment explanation
Indices: 29067--29125 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 20
29057 AAAATTTTCA
*
29067 GCCTGGTTTCGAAAATCCCTT
1 GCCTGGTTTCG-AAACCCCTT
29088 GCCTGGTTTCGAAACCCCTT
1 GCCTGGTTTCGAAACCCCTT
29108 GTACCTGGTTTC-AAACCC
1 G--CCTGGTTTCGAAACCC
29126 TCTTTGGCTA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
20 9 0.26
21 17 0.49
22 9 0.26
ACGTcount: A:0.19, C:0.32, G:0.19, T:0.31
Consensus pattern (20 bp):
GCCTGGTTTCGAAACCCCTT
Found at i:36231 original size:3 final size:3
Alignment explanation
Indices: 36211--36264 Score: 56
Period size: 3 Copynumber: 17.7 Consensus size: 3
36201 TTAAAAAATA
* * *
36211 TAT TAA TAT TAA TAT TAT TAT TAA TAT TAT TAT TAT TAT TAAT TAGT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TA-T
36258 T-T TAT TA
1 TAT TAT TA
36265 CACTATTTTG
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
2 2 0.05
3 35 0.83
4 5 0.12
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:36232 original size:18 final size:18
Alignment explanation
Indices: 36211--36253 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
36201 TTAAAAAATA
36211 TATTAATATTAATATTAT
1 TATTAATATTAATATTAT
*
36229 TATTAATATTATTATTAT
1 TATTAATATTAATATTAT
36247 TATTAAT
1 TATTAAT
36254 TAGTTTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
TATTAATATTAATATTAT
Found at i:36558 original size:39 final size:39
Alignment explanation
Indices: 36493--36567 Score: 105
Period size: 39 Copynumber: 1.9 Consensus size: 39
36483 TAAGCAACAA
* * *
36493 CCGTCGAATCCTCACTTTCCAGCCGCCATTCAAGCCAAG
1 CCGTCGAATCCTCACTCTCAAACCGCCATTCAAGCCAAG
* *
36532 CCGTCGAATCCTCACTCTCAAACCGCCTTTCGAGCC
1 CCGTCGAATCCTCACTCTCAAACCGCCATTCAAGCC
36568 GATCGTATAG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 31 1.00
ACGTcount: A:0.21, C:0.43, G:0.15, T:0.21
Consensus pattern (39 bp):
CCGTCGAATCCTCACTCTCAAACCGCCATTCAAGCCAAG
Found at i:39907 original size:24 final size:24
Alignment explanation
Indices: 39825--39907 Score: 71
Period size: 24 Copynumber: 3.5 Consensus size: 24
39815 ATTTTCGATT
* * *
39825 TGAATTCTATTCTGACATCTAATC
1 TGAATTCTGTTCTGATATCTGATC
*
39849 TGAAATCTGTTCTGAT-TCCTGA-C
1 TGAATTCTGTTCTGATAT-CTGATC
* *
39872 ATGGATTTTGTTCTGATATCTGATC
1 -TGAATTCTGTTCTGATATCTGATC
*
39897 TGAATTATGTT
1 TGAATTCTGTT
39908 TTATTTTCTG
Statistics
Matches: 46, Mismatches: 9, Indels: 8
0.73 0.14 0.13
Matches are distributed among these distances:
23 2 0.04
24 42 0.91
25 2 0.04
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.45
Consensus pattern (24 bp):
TGAATTCTGTTCTGATATCTGATC
Found at i:42231 original size:130 final size:133
Alignment explanation
Indices: 41998--42462 Score: 561
Period size: 130 Copynumber: 3.5 Consensus size: 133
41988 GACCACCGTT
* * * *
41998 ACCCGTTGACTTTGAC--CA-AAAAAGTTAAAATTTTTGAAAAGTCATATTTTATGTTTTTTGAT
1 ACCCGTTGACTTTGACTTGACAAAAAGTTAAAAATTTTGAAAAGTCATATTTTATGTTTTCTGAC
*
42060 GTCTTTAGTTCGATTATGAAGTTCGTTTTTCCAAATTCAAACCCGAAAACCTCCAAATTGTCAGT
66 GTCTTTAGTTCGATTACGAAGTTCGTTTTTCCAAATTCAAACCCGAAAACCTCCAAATTGTCAGT
42125 TAA
131 TAA
42128 ACCCGTTGACTTTGAC-T-A-AAAAAGTTAAAAATTTTGAAAAGTCATATTTTATGTTTTCTGAC
1 ACCCGTTGACTTTGACTTGACAAAAAGTTAAAAATTTTGAAAAGTCATATTTTATGTTTTCTGAC
* * * * *
42190 GTCTTTAGTTCGATTCCGAAGTCCGTTTTTCCAAATTCAAACCCGACAACCTCTAAATTGCCAGT
66 GTCTTTAGTTCGATTACGAAGTTCGTTTTTCCAAATTCAAACCCGAAAACCTCCAAATTGTCAGT
42255 TAA
131 TAA
* *
42258 ACCCGTTGACTTTGACTTTGACCAAAAAG-TCAAAATTTTCGAAAAGTCATATTTTATGTTTTTT
1 ACCCGTTGACTTTGAC-TTGA-CAAAAAGTTAAAAATTTT-GAAAAGTCATATTTTATGTTTTCT
* * * * * * * * *
42322 GATGT-TCTGAGTTCGATTACGAAATTTGGTTTTCCAAATTCGAACCAGAAAGCCTCCAAATTAT
63 GACGTCT-TTAGTTCGATTACGAAGTTCGTTTTTCCAAATTCAAACCCGAAAACCTCCAAATTGT
* *
42386 CAATCAA
127 CAGTTAA
* * * *
42393 TCCCGTTGACTTTGACATTGACCAAAAAGTCAAAATTTTTGAAAAATCATATTTTATGCTTTTC-
1 ACCCGTTGACTTTGAC-TTGA-CAAAAAGTTAAAAATTTTGAAAAGTCATATTTTATG-TTTTCT
42457 GACGTC
63 GACGTC
42463 CTGAGTCCGA
Statistics
Matches: 289, Mismatches: 35, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
130 136 0.47
132 1 0.00
133 1 0.00
134 10 0.03
135 130 0.45
136 11 0.04
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (133 bp):
ACCCGTTGACTTTGACTTGACAAAAAGTTAAAAATTTTGAAAAGTCATATTTTATGTTTTCTGAC
GTCTTTAGTTCGATTACGAAGTTCGTTTTTCCAAATTCAAACCCGAAAACCTCCAAATTGTCAGT
TAA
Found at i:42383 original size:135 final size:134
Alignment explanation
Indices: 42003--42474 Score: 596
Period size: 135 Copynumber: 3.5 Consensus size: 134
41993 CCGTTACCCG
* * *
42003 TTGACTTTGACCAAAAAAGTTAAAATTTTTGAAAAGTCATATTTTATGTTTTTTGATGTCTTTAG
1 TTGACTTTGACC-AAAAAGTCAAAATTTTTGAAAAGTCATATTTTATGTTTTTTGACGTCTTGAG
*
42068 TTCGATTATGAAGTTCGTTTTTCCAAATTCAAACCCGAAAACCTCCAAATTGTCAGTTAAACCCG
65 TTCGATTACGAAGTTCGTTTTTCCAAATTCAAACCCG-AAACCTCCAAATTGTCAGTTAAACCCG
42133 TTGACT
129 TTGACT
* * * *
42139 TTGAC--T-A--AAAAAGTTAAAAATTTTGAAAAGTCATATTTTATGTTTTCTGACGTCTTTAGT
1 TTGACTTTGACCAAAAAGTCAAAATTTTTGAAAAGTCATATTTTATGTTTTTTGACGTCTTGAGT
* * * *
42199 TCGATTCCGAAGTCCGTTTTTCCAAATTCAAACCCGACAACCTCTAAATTGCCAGTTAAACCCGT
66 TCGATTACGAAGTTCGTTTTTCCAAATTCAAACCCGA-AACCTCCAAATTGTCAGTTAAACCCGT
42264 TGACT
130 TGACT
* *
42269 TTGACTTTGACCAAAAAGTCAAAATTTTCGAAAAGTCATATTTTATGTTTTTTGATGT-TCTGAG
1 TTGACTTTGACCAAAAAGTCAAAATTTTTGAAAAGTCATATTTTATGTTTTTTGACGTCT-TGAG
* * * * * * * * *
42333 TTCGATTACGAAATTTGGTTTTCCAAATTCGAACCAGAAAGCCTCCAAATTATCAATCAATCCCG
65 TTCGATTACGAAGTTCGTTTTTCCAAATTCAAACCCGAAA-CCTCCAAATTGTCAGTTAAACCCG
42398 TTGACT
129 TTGACT
* * * * *
42404 TTGACATTGACCAAAAAGTCAAAATTTTTGAAAAATCATATTTTATGCTTTTCGACGTCCTGAGT
1 TTGACTTTGACCAAAAAGTCAAAATTTTTGAAAAGTCATATTTTATGTTTTTTGACGTCTTGAGT
*
42469 CCGATT
66 TCGATT
42475 CACATAAAAA
Statistics
Matches: 292, Mismatches: 35, Indels: 19
0.84 0.10 0.05
Matches are distributed among these distances:
129 1 0.00
130 118 0.40
132 1 0.00
133 2 0.01
134 4 0.01
135 161 0.55
136 5 0.02
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (134 bp):
TTGACTTTGACCAAAAAGTCAAAATTTTTGAAAAGTCATATTTTATGTTTTTTGACGTCTTGAGT
TCGATTACGAAGTTCGTTTTTCCAAATTCAAACCCGAAACCTCCAAATTGTCAGTTAAACCCGTT
GACT
Found at i:42700 original size:233 final size:234
Alignment explanation
Indices: 42268--42707 Score: 587
Period size: 233 Copynumber: 1.9 Consensus size: 234
42258 ACCCGTTGAC
* ** * *
42268 TTTGACTTTGACCAAAAAGTCAAAATTTTCGAAAAGTCATATTTTATGTTTTTTGATGTTCTGAG
1 TTTGACTTTGACCAAAAAGTCAAAATTTTCGAAAAGTCATATTTTATGTTTTTCGACATCCTGAA
* * * *
42333 TTCGATTACGAAATTTGGTTTTCCAAATTCGAACCAGAAAGCCTCCAAATTATCAATCAATCCCG
66 TTCGATTACGAAATCTGCTTTTCCAAATTCAAACCAGAAAGCCTCCAAATTATCAATCAAACCCG
* * * *
42398 TTGACTTTGACATTGACCAAAAAGTCAAAATTTTTGAAAAATCATATTTTATGCTTTTCGACGTC
131 TTGAATTTGACATTAACCAAAAAGTCAAAATTTTCGAAAAATCATATTTTATGCTTTTCGACATC
42463 CTGAGTCCGATTCACATAAAAATATGACTTTTTGAAAAT
196 CTGAGTCCGATTCACATAAAAATATGACTTTTTGAAAAT
* * *
42502 TTTGGCTTTGACCGAAAAAGTTAAAATTTTCGTAAAGTC-TATTTTATGTTTTTCGACATCCTGA
1 TTTGACTTTGACC-AAAAAGTCAAAATTTTCGAAAAGTCATATTTTATGTTTTTCGACATCCTGA
* * * * * *
42566 ATTCGATTCCGAAGTCT-CTTTTCTAAATTCAAACCTGAAAGCCTCCAAATTGTCAGTCAAACCC
65 ATTCGATTACGAAATCTGCTTTTCCAAATTCAAACCAGAAAGCCTCCAAATTATCAATCAAACCC
* * * * * * *
42630 GTTGAATTTTACTTTAACCAAAAAGTTAAAATTTTCGAAAAGTCATATTTTTTGTTTTTTGACAT
130 GTTGAATTTGACATTAACCAAAAAGTCAAAATTTTCGAAAAATCATATTTTATGCTTTTCGACAT
*
42695 CCTGAGTTCGATT
195 CCTGAGTCCGATT
42708 ATGAAGTCCG
Statistics
Matches: 175, Mismatches: 30, Indels: 3
0.84 0.14 0.01
Matches are distributed among these distances:
233 106 0.61
234 46 0.26
235 23 0.13
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (234 bp):
TTTGACTTTGACCAAAAAGTCAAAATTTTCGAAAAGTCATATTTTATGTTTTTCGACATCCTGAA
TTCGATTACGAAATCTGCTTTTCCAAATTCAAACCAGAAAGCCTCCAAATTATCAATCAAACCCG
TTGAATTTGACATTAACCAAAAAGTCAAAATTTTCGAAAAATCATATTTTATGCTTTTCGACATC
CTGAGTCCGATTCACATAAAAATATGACTTTTTGAAAAT
Found at i:42705 original size:134 final size:135
Alignment explanation
Indices: 42507--42764 Score: 362
Period size: 134 Copynumber: 1.9 Consensus size: 135
42497 AAAATTTTGG
* *
42507 CTTTGACCGAAAAAGTTAAAATTTTCGTAAAGTCTATTTTATGTTTTTCGACATCCTGAATTCGA
1 CTTTAACCGAAAAAGTTAAAATTTTCGAAAAGTCTATTTTATGTTTTTCGACATCCTGAATTCGA
* * * *
42572 TTCCGAAGTCTC-TTTTCTAAATTC-AAACCTG-AAAGCCTCCAAATTGTCAGTCAAACCCGTTG
66 TTACGAAGTC-CGTTTTCCAAATTCGAAACC-GAAAAACCTCAAAATTGTCAGTCAAACCCGTTG
42634 AATTTTA
129 AATTTTA
* * *
42641 CTTTAACC-AAAAAGTTAAAATTTTCGAAAAGTCATATTTTTTGTTTTTTGACATCCTGAGTTCG
1 CTTTAACCGAAAAAGTTAAAATTTTCGAAAAGTC-TATTTTATGTTTTTCGACATCCTGAATTCG
*
42705 ATTATGAAGTCCGTTTTTCCAAATTCGAAACCGAAAAACCTCAAAATTGTCAGTCAAACC
65 ATTACGAAGTCCG-TTTTCCAAATTCGAAACCGAAAAACCTCAAAATTGTCAGTCAAACC
42765 GATTAAAAGT
Statistics
Matches: 109, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
133 25 0.23
134 43 0.39
135 12 0.11
136 29 0.27
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (135 bp):
CTTTAACCGAAAAAGTTAAAATTTTCGAAAAGTCTATTTTATGTTTTTCGACATCCTGAATTCGA
TTACGAAGTCCGTTTTCCAAATTCGAAACCGAAAAACCTCAAAATTGTCAGTCAAACCCGTTGAA
TTTTA
Found at i:44554 original size:29 final size:29
Alignment explanation
Indices: 44494--44649 Score: 170
Period size: 29 Copynumber: 5.3 Consensus size: 29
44484 GAAAAATATA
* *
44494 AAAATATCACCTTTATTAAAAATAATTACC
1 AAAATATCACCATT-TTAAAAATAATTCCC
*
44524 AAAATATCACCATTTTACAAATAATTCCC
1 AAAATATCACCATTTTAAAAATAATTCCC
* * * *
44553 AAAATTTCATCATTTTAAAAATAATTACT
1 AAAATATCACCATTTTAAAAATAATTCCC
* *
44582 AGAATATCACTATTTTTAAAAA-AATTCCC
1 AAAATATCACCA-TTTTAAAAATAATTCCC
* * *
44611 AAAATATCACCTTTTTCAAAATAATCCCC
1 AAAATATCACCATTTTAAAAATAATTCCC
*
44640 AAAATGTCAC
1 AAAATATCAC
44650 TGGGTCGGGT
Statistics
Matches: 104, Mismatches: 20, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
28 8 0.08
29 74 0.71
30 22 0.21
ACGTcount: A:0.46, C:0.19, G:0.01, T:0.33
Consensus pattern (29 bp):
AAAATATCACCATTTTAAAAATAATTCCC
Found at i:44650 original size:58 final size:58
Alignment explanation
Indices: 44494--44650 Score: 190
Period size: 58 Copynumber: 2.7 Consensus size: 58
44484 GAAAAATATA
* *
44494 AAAATATCACCTTTATTAAAAATAATTACCAAAATATCACCATTTTACAAATAATTCCC
1 AAAATATCACCTTT-TTAAAAATAATTACCAAAATATCACTATTTTACAAAAAATTCCC
* * * * *
44553 AAAATTTCATCATTTTAAAAATAATTACTAGAATATCACTATTTTTA-AAAAAATTCCC
1 AAAATATCACCTTTTTAAAAATAATTACCAAAATATCACTA-TTTTACAAAAAATTCCC
* ** *
44611 AAAATATCACCTTTTTCAAAATAATCCCCAAAATGTCACT
1 AAAATATCACCTTTTTAAAAATAATTACCAAAATATCACT
44651 GGGTCGGGTC
Statistics
Matches: 81, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
58 65 0.80
59 16 0.20
ACGTcount: A:0.46, C:0.19, G:0.01, T:0.34
Consensus pattern (58 bp):
AAAATATCACCTTTTTAAAAATAATTACCAAAATATCACTATTTTACAAAAAATTCCC
Found at i:48124 original size:151 final size:151
Alignment explanation
Indices: 47847--48132 Score: 545
Period size: 151 Copynumber: 1.9 Consensus size: 151
47837 AAATGCCACG
* *
47847 TAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATTATTCCTTAAGAATCA
1 TAGAATTACACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATTATTCCTTAAGAATAA
47912 TATACATATACTAGGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAATATATA
66 TATACATATACTAGGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAATATATA
47977 TATATATCAAGAAGGACCGCT
131 TATATATCAAGAAGGACCGCT
47998 TAGAATTACACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATTATTCCTTAAGAATAA
1 TAGAATTACACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATTATTCCTTAAGAATAA
*
48063 TATACATATACTAGGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACATAATATATA
66 TATACATATACTAGGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAATATATA
48128 TATAT
131 TATAT
48133 CCCGAAGGAC
Statistics
Matches: 132, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
151 132 1.00
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (151 bp):
TAGAATTACACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATTATTCCTTAAGAATAA
TATACATATACTAGGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAATATATA
TATATATCAAGAAGGACCGCT
Found at i:49687 original size:64 final size:62
Alignment explanation
Indices: 49554--49715 Score: 182
Period size: 64 Copynumber: 2.5 Consensus size: 62
49544 TAATGAAGGT
* * *
49554 ATGCATCGATGCACTACACCATGCATCGATGCATAAATCATATTCGATGTTTGTATTTAATGGGG
1 ATGCATCGATGCACT-C-CTATGCATCGATGCATAAATCATATTCGATGTTTCTATTTAAT-GGC
* * *
49619 ATGCATCGATGCACTCCTTATGCATCGATGCATAAATCCTATTCGATGTTTTCTTTTTAAAT-TC
1 ATGCATCGATGCACTCC-TATGCATCGATGCATAAATCATATTCGATG-TTTCTATTT-AATGGC
* *
49683 ATGCATCGATGCACTGCATGTGCATCGATGCAT
1 ATGCATCGATGCACT-CCTATGCATCGATGCAT
49716 CTTAAACAAT
Statistics
Matches: 85, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
63 1 0.01
64 58 0.68
65 23 0.27
66 3 0.04
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.35
Consensus pattern (62 bp):
ATGCATCGATGCACTCCTATGCATCGATGCATAAATCATATTCGATGTTTCTATTTAATGGC
Found at i:53236 original size:149 final size:149
Alignment explanation
Indices: 52998--53293 Score: 574
Period size: 149 Copynumber: 2.0 Consensus size: 149
52988 GAAGTGCCAC
* *
52998 GTAGAATTGTACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATTATTCCTTAAGAATC
1 GTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATTATTCCTTAAGAATA
53063 ATATACATATACTAGGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAATATAT
66 ATATACATATACTAGGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAATATAT
53128 ATATATCCCGAAGGACCTT
131 ATATATCCCGAAGGACCTT
53147 GTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATTATTCCTTAAGAATA
1 GTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATTATTCCTTAAGAATA
53212 ATATACATATACTAGGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAATATAT
66 ATATACATATACTAGGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAATATAT
53277 ATATATCCCGAAGGACC
131 ATATATCCCGAAGGACC
53294 GAGTAGAACC
Statistics
Matches: 145, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
149 145 1.00
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (149 bp):
GTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATTATTCCTTAAGAATA
ATATACATATACTAGGGATCAAGTATGTGTCTTACAAGACTTCACACATGTTCCACAGAATATAT
ATATATCCCGAAGGACCTT
Found at i:53479 original size:17 final size:17
Alignment explanation
Indices: 53457--53489 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
53447 TTATCTCAAG
53457 TACATGTAATCACGTAT
1 TACATGTAATCACGTAT
53474 TACATGTAATCACGTA
1 TACATGTAATCACGTA
53490 GATCATTTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.33
Consensus pattern (17 bp):
TACATGTAATCACGTAT
Found at i:54835 original size:64 final size:63
Alignment explanation
Indices: 54702--54863 Score: 209
Period size: 64 Copynumber: 2.5 Consensus size: 63
54692 TAATGAAGGT
* * *
54702 ATGCATCGATGCACTACACCATGCATCGATGCATAAATCCTATTCGATGTTTGTATTTAATGGGG
1 ATGCATCGATGCACTACA-TATGCATCGATGCATAAATCCTATTCGATGTTTCTATTTAAT-GGC
* * *
54767 ATGCATCGATGCACTACTTATGCATCGATGCATAAATCCTATTCGATGTTTTCTTTTTAAAT-TC
1 ATGCATCGATGCACTACATATGCATCGATGCATAAATCCTATTCGATG-TTTCTATTT-AATGGC
* *
54831 ATGCATCGATGCACTGCATGTGCATCGATGCAT
1 ATGCATCGATGCACTACATATGCATCGATGCAT
54864 CTTAAACAAT
Statistics
Matches: 86, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
64 59 0.69
65 24 0.28
66 3 0.03
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.35
Consensus pattern (63 bp):
ATGCATCGATGCACTACATATGCATCGATGCATAAATCCTATTCGATGTTTCTATTTAATGGC
Found at i:60397 original size:57 final size:55
Alignment explanation
Indices: 60333--60531 Score: 175
Period size: 57 Copynumber: 3.5 Consensus size: 55
60323 ATCACCTTTA
* *
60333 TTAAAAATAATTACCAAAATATCACCGTTTTACAAATAATTCCCAAAATGTCATATT
1 TTAAAAATAATTACCAAAATGTCACC-TTTTTCAAATAATTCCCAAAATGTCAT-TT
* * * * * *
60390 TTAAAAATAA-TAACAAGAATGTCACTATTTTTTAAAAAATTTCCTAAAATGTAACTTTTT
1 TTAAAAATAATTACCAA-AATGTCAC-CTTTTTCAAATAA-TTCCCAAAATGT--C-ATTT
* * *
60450 TTCAAAATAATTCCCAAAATGTCACCTTTTTCAAAATAATTTCCAAAATGTCACTTT
1 TTAAAAATAATTACCAAAATGTCACCTTTTTC-AAATAATTCCCAAAATGTCA-TTT
** *
60507 TTTCAAATAATTCCCAAAATGTCAC
1 TTAAAAATAATTACCAAAATGTCAC
60532 TGGGGCGAGT
Statistics
Matches: 114, Mismatches: 19, Indels: 18
0.75 0.13 0.12
Matches are distributed among these distances:
56 5 0.04
57 53 0.46
58 11 0.10
59 15 0.13
60 25 0.22
61 5 0.04
ACGTcount: A:0.43, C:0.17, G:0.04, T:0.36
Consensus pattern (55 bp):
TTAAAAATAATTACCAAAATGTCACCTTTTTCAAATAATTCCCAAAATGTCATTT
Found at i:60531 original size:28 final size:28
Alignment explanation
Indices: 60337--60532 Score: 180
Period size: 29 Copynumber: 6.8 Consensus size: 28
60327 CCTTTATTAA
* * * *
60337 AAATAATTACCAAAATATCACCGTTTTAC
1 AAATAATTCCCAAAATGTCA-CTTTTTTC
**
60366 AAATAATTCCCAAAATGTCA-TATTTTAA
1 AAATAATTCCCAAAATGTCACT-TTTTTC
** *
60394 AAATAA-TAACAAGAATGTCACTATTTTTT
1 AAATAATTCCCAA-AATGTCACT-TTTTTC
* * *
60423 AAAAAATTTCCTAAAATGTAACTTTTTTTC
1 AAATAA-TTCCCAAAATGTCAC-TTTTTTC
*
60453 AAAATAATTCCCAAAATGTCACCTTTTTC
1 -AAATAATTCCCAAAATGTCACTTTTTTC
*
60482 AAAATAATTTCCAAAATGTCACTTTTTTC
1 -AAATAATTCCCAAAATGTCACTTTTTTC
60511 AAATAATTCCCAAAATGTCACT
1 AAATAATTCCCAAAATGTCACT
60533 GGGGCGAGTC
Statistics
Matches: 139, Mismatches: 21, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
27 4 0.03
28 39 0.28
29 62 0.45
30 25 0.18
31 9 0.06
ACGTcount: A:0.42, C:0.17, G:0.04, T:0.36
Consensus pattern (28 bp):
AAATAATTCCCAAAATGTCACTTTTTTC
Found at i:65184 original size:28 final size:28
Alignment explanation
Indices: 65153--65234 Score: 76
Period size: 28 Copynumber: 2.9 Consensus size: 28
65143 ACCTTATTTA
*
65153 TTTTATTTGTGTTTTAGTCCCTTAAATT
1 TTTTATTTCTGTTTTAGTCCCTTAAATT
* * *
65181 TTTT-TTTACTATTTTAGACCCTTTAATT
1 TTTTATTT-CTGTTTTAGTCCCTTAAATT
* *
65209 TTCTATTTTTGGTATTTAGTCCCTTA
1 TTTTATTTCT-GT-TTTAGTCCCTTA
65235 GGCTTATATT
Statistics
Matches: 41, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
27 3 0.07
28 24 0.59
29 4 0.10
30 10 0.24
ACGTcount: A:0.18, C:0.13, G:0.09, T:0.60
Consensus pattern (28 bp):
TTTTATTTCTGTTTTAGTCCCTTAAATT
Found at i:65451 original size:21 final size:22
Alignment explanation
Indices: 65410--65453 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
65400 ATGTATGTAC
*
65410 ATGTTGTAAATGTTATTATTTT
1 ATGTTGTAAATATTATTATTTT
*
65432 ATGTTGTAATTATT-TTATTTT
1 ATGTTGTAAATATTATTATTTT
65453 A
1 A
65454 CCTCTTATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.27, C:0.00, G:0.11, T:0.61
Consensus pattern (22 bp):
ATGTTGTAAATATTATTATTTT
Found at i:66345 original size:11 final size:11
Alignment explanation
Indices: 66322--66350 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
66312 ATTGGAAAAC
66322 TAATTTA-TTT
1 TAATTTATTTT
66332 TAATTTATTTT
1 TAATTTATTTT
66343 TAATTTAT
1 TAATTTAT
66351 ATATTTACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.39
11 11 0.61
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (11 bp):
TAATTTATTTT
Found at i:69168 original size:31 final size:31
Alignment explanation
Indices: 69110--69179 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
69100 TATAATATTT
* * *
69110 TATATTTTATTTTTATTTTAATGTAAAAATG
1 TATATTTTATCTTTATTTCAATGTAAAAATA
*
69141 TATATTTTATCTTTATCTTCACT-TAAAAATA
1 TATATTTTATCTTTAT-TTCAATGTAAAAATA
69172 TAT-TTTTA
1 TATATTTTA
69180 AAAATATATT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
30 5 0.15
31 25 0.74
32 4 0.12
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (31 bp):
TATATTTTATCTTTATTTCAATGTAAAAATA
Found at i:69182 original size:14 final size:14
Alignment explanation
Indices: 69163--69189 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
69153 TTATCTTCAC
69163 TTAAAAATATATTT
1 TTAAAAATATATTT
69177 TTAAAAATATATT
1 TTAAAAATATATT
69190 AACTTTAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
TTAAAAATATATTT
Found at i:69211 original size:21 final size:22
Alignment explanation
Indices: 69183--69232 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 22
69173 ATTTTTAAAA
69183 ATATATTAACTTTAA-ATATTTT
1 ATATATT-ACTTTAATATATTTT
*
69205 AT-TATTATTTTAATATATTTT
1 ATATATTACTTTAATATATTTT
69226 ATATATT
1 ATATATT
69233 CATATTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 6 0.24
21 13 0.52
22 6 0.24
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (22 bp):
ATATATTACTTTAATATATTTT
Found at i:70537 original size:23 final size:21
Alignment explanation
Indices: 70499--70541 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
70489 TTAATTATTT
70499 AAAAAATTAAATAAAAATATA
1 AAAAAATTAAATAAAAATATA
*
70520 AAAAACATTTAATAAAAA-ATA
1 AAAAA-ATTAAATAAAAATATA
70541 A
1 A
70542 TTTTTTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.23
Consensus pattern (21 bp):
AAAAAATTAAATAAAAATATA
Found at i:79046 original size:22 final size:22
Alignment explanation
Indices: 79008--79065 Score: 93
Period size: 22 Copynumber: 2.7 Consensus size: 22
78998 AGGATTATAA
79008 CTTAAATTT-A-TATTTGAATT
1 CTTAAATTTCACTATTTGAATT
79028 CTTAAATTTCACTATTTGAATT
1 CTTAAATTTCACTATTTGAATT
*
79050 CTTAGATTTCACTATT
1 CTTAAATTTCACTATT
79066 AGAAATAATT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
20 9 0.26
21 1 0.03
22 25 0.71
ACGTcount: A:0.31, C:0.12, G:0.05, T:0.52
Consensus pattern (22 bp):
CTTAAATTTCACTATTTGAATT
Found at i:85433 original size:2 final size:2
Alignment explanation
Indices: 85426--85451 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
85416 TTCTTCTCTA
85426 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
85452 TCCTTGTTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.