Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002714.1 Hibiscus syriacus cultivar Beakdansim tig00005600_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54298

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17253--17328
31
2.5
31
84
4
91
61
3
27
6
1.38
17402--17426
2
12.5
2
100
0
50
48
0
0
52
1.00
18023--18076
3
18.0
3
80
0
63
38
0
0
61
0.96
18023--18076
15
3.8
15
85
9
78
38
0
0
61
0.96
19381--19456
27
2.9
26
73
7
73
27
2
3
65
1.23
30955--31003
8
5.9
8
83
9
62
85
0
14
0
0.59
30958--31008
19
2.6
21
84
15
81
86
0
13
0
0.58
30955--31008
26
2.0
27
92
3
92
85
0
14
0
0.61
31362--31410
19
2.8
17
81
9
55
36
10
6
46
1.63
31702--31927
114
2.0
114
89
0
344
34
15
18
30
1.93
32690--33408
113
6.4
108
85
6
826
36
14
19
29
1.91
32690--33288
222
2.7
221
91
3
911
36
14
19
29
1.91
33219--33487
120
2.3
118
88
2
378
39
15
19
25
1.91
32687--33411
335
2.1
328
85
9
985
36
14
19
29
1.91
33637--33678
3
14.0
3
84
0
57
40
0
0
59
0.97
34406--34441
11
3.3
11
92
0
54
38
11
44
5
1.63
34410--34445
11
3.3
11
92
0
54
44
11
38
5
1.63
34996--35071
27
2.9
26
73
7
73
28
1
3
65
1.18
37392--37483
31
2.9
31
85
4
105
40
9
26
23
1.86
39926--39987
2
31.5
2
93
3
108
48
0
0
51
1.00
41091--41154
27
2.3
28
79
12
78
34
4
0
60
1.17
41095--41153
30
2.0
30
86
6
84
35
5
0
59
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41141--41185
21
2.1
22
87
4
65
24
8
0
66
1.20
41237--41298
26
2.5
25
80
15
67
27
6
4
61
1.41
46693--46726
17
2.1
16
88
5
50
76
0
8
14
1.01
50544--50587
20
2.2
20
84
4
63
65
0
15
18
1.27

Tables:   1

The End!