genome.fa.s2716.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002716.1 Hibiscus syriacus cultivar Beakdansim tig00005605_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118769

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1658--1749	47	1.9	48	86	6	134	30	10	21	36	1.88
14586--14713	65	2.0	65	82	3	159	31	15	24	28	1.96
16350--16387	20	2.0	20	89	5	60	18	15	34	31	1.92
21901--22006	55	1.9	57	92	3	180	34	11	20	33	1.88
22294--22658	81	4.5	81	88	0	516	34	11	23	30	1.90
24415--24447	16	2.1	16	94	0	57	48	12	15	24	1.78
26412--26454	17	2.5	18	82	17	56	9	2	9	79	1.03
26498--26540	20	2.1	20	86	4	59	67	9	11	11	1.42
33404--33437	17	2.0	17	88	0	50	35	23	11	29	1.90
33605--33641	13	2.8	14	84	8	51	48	10	5	35	1.61
37062--37108	24	2.0	24	100	0	94	21	25	12	40	1.89
41163--41879	228	3.1	228	95	2	1296	44	7	8	38	1.64
41929--41975	20	2.4	19	89	10	76	55	10	17	17	1.69
42119--42161	20	2.3	19	88	11	63	51	11	16	20	1.75
44355--44398	21	2.1	21	91	0	70	40	11	31	15	1.83
44432--44497	33	2.0	33	90	0	105	28	0	48	22	1.51
46290--46338	19	2.6	19	93	0	80	30	2	10	57	1.43
46457--47805	199	6.9	199	94	3	2445	36	14	17	31	1.91
46457--47805	397	3.4	397	96	2	2461	36	14	17	31	1.91
47290--47805	178	2.8	178	92	6	816	35	14	17	31	1.91
49271--49350	18	4.4	18	80	3	90	37	8	33	20	1.83
49271--49362	6	15.3	6	80	0	76	38	7	33	20	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49286--49366	3	27.0	3	79	0	81	37	6	33	23	1.80
49274--49350	36	2.1	36	92	0	127	36	9	33	20	1.85
49274--49362	12	7.4	12	83	0	88	37	7	33	21	1.82
50410--50496	39	2.2	39	93	0	147	48	21	12	17	1.80
50917--50989	23	3.2	23	88	0	101	34	4	21	39	1.73
51348--51420	23	3.2	23	88	0	101	34	4	21	39	1.73
51779--51851	23	3.2	23	88	0	101	34	4	21	39	1.73
52208--52280	23	3.2	23	84	0	92	34	4	20	41	1.72
50715--53058	431	5.5	431	97	0	4362	40	8	12	38	1.73
50715--53058	856	2.7	861	96	0	4360	40	8	12	38	1.73
52635--52707	23	3.2	23	90	0	110	32	5	21	39	1.77
64704--64740	19	1.9	19	100	0	74	37	5	13	43	1.67
73731--73783	8	7.4	7	82	14	56	0	16	1	81	0.79
73717--73783	34	2.1	31	83	10	82	2	16	2	77	1.01
73731--73783	11	4.9	11	78	21	51	0	16	1	81	0.79
74018--74062	21	2.0	22	87	8	65	66	0	13	20	1.24
79561--79596	2	18.0	2	100	0	72	50	0	0	50	1.00
82494--82560	30	2.2	30	91	0	116	34	23	2	38	1.70
92387--92452	21	2.8	25	71	21	61	31	31	10	25	1.90
92384--92439	21	2.7	21	83	5	69	32	30	10	26	1.90
92570--92611	20	2.0	21	90	4	68	33	14	19	33	1.91
103646--103690	21	2.1	21	88	8	65	55	8	0	35	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111343--111398	20	2.7	21	81	16	71	42	14	16	26	1.86
111385--111463	34	2.3	34	93	0	131	41	10	20	27	1.84
111872--111995	45	2.8	46	84	7	157	45	12	19	22	1.84
111872--112016	44	3.2	44	86	5	186	46	11	20	22	1.82

Tables:   1

The End!