Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002718.1 Hibiscus syriacus cultivar Beakdansim tig00005609_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83648

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15826--16193
30
12.6
29
74
7
233
40
8
1
49
1.41
15826--16151
59
5.6
58
73
7
196
40
8
1
50
1.40
16092--16143
25
2.1
25
85
7
70
46
5
0
48
1.26
16214--16350
30
4.6
29
76
8
107
54
1
6
37
1.36
18097--18139
21
2.2
19
87
8
59
55
0
16
27
1.41
18213--18247
18
1.9
18
94
0
61
20
17
34
28
1.95
18850--18889
21
1.9
21
90
10
64
30
20
22
27
1.98
25098--25144
22
2.1
22
92
0
76
27
19
23
29
1.98
33427--33455
11
2.6
11
100
0
58
65
0
10
24
1.23
33659--33684
12
2.2
12
100
0
52
34
0
19
46
1.50
42586--42651
23
2.9
23
81
0
87
53
15
9
22
1.70
51384--51436
27
2.0
27
88
0
79
24
28
16
30
1.97
51532--51686
27
6.0
27
68
18
98
23
29
15
32
1.95
51865--51945
27
3.0
27
73
7
83
35
16
20
27
1.94
52232--52273
16
2.6
16
77
11
50
61
0
0
38
0.96
63811--63893
36
2.3
36
82
0
112
10
12
55
21
1.67
63910--63986
24
3.2
24
75
0
82
10
14
57
18
1.65
72261--72372
50
2.2
49
80
9
127
34
21
3
40
1.71
72856--72901
22
2.1
22
100
0
92
43
10
13
32
1.78
73507--73561
28
2.0
28
88
0
83
43
18
9
29
1.80
78578--78640
33
1.9
33
96
0
117
31
30
15
22
1.95
81102--81201
42
2.3
42
86
3
137
15
21
12
52
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81447--81520
36
2.1
36
100
0
148
10
28
13
47
1.76

Tables:   1

The End!