genome.fa.s2719.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002719.1 Hibiscus syriacus cultivar Beakdansim tig00005611_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91275

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10084--10499	222	1.9	222	88	3	640	37	19	22	20	1.95
10282--10886	246	2.5	246	90	0	933	36	20	21	20	1.96
9863--10745	468	1.9	468	84	3	1195	37	18	22	22	1.95
11565--11614	22	2.3	22	100	0	100	40	0	26	34	1.56
12070--12124	22	2.3	24	84	15	87	29	7	27	36	1.84
12080--12135	22	2.5	22	97	0	103	28	8	23	39	1.85
12879--12946	17	3.9	18	79	12	70	39	11	10	38	1.76
15965--16001	12	3.0	13	92	4	51	16	13	2	67	1.34
15969--16001	12	2.8	12	95	0	57	18	12	3	66	1.36
18448--18519	17	4.2	17	81	10	67	38	9	12	38	1.76
18475--18518	18	2.5	18	89	10	65	43	13	6	36	1.71
20363--20403	16	2.6	16	96	0	73	17	19	26	36	1.94
21556--21590	9	4.0	9	88	7	54	22	2	0	74	0.95
21556--21588	17	1.9	17	93	0	57	21	3	0	75	0.93
33739--33769	7	4.4	7	100	0	62	25	29	29	16	1.96
33766--33821	5	10.4	5	78	14	58	7	21	53	17	1.67
33759--33821	22	2.9	22	100	0	126	9	22	50	17	1.74
33830--33918	10	9.1	10	80	10	96	29	26	25	17	1.98
33827--33918	19	4.7	19	81	9	105	28	27	27	17	1.98
33833--33918	29	2.9	30	86	6	113	29	26	26	17	1.98
41069--41099	7	4.4	7	100	0	62	25	29	29	16	1.96
41096--41151	5	10.4	5	78	14	58	7	21	53	17	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41089--41151	22	2.9	22	100	0	126	9	22	50	17	1.74
41155--41268	19	5.9	19	84	11	133	28	28	27	16	1.97
41156--41267	9	11.7	9	79	11	107	28	28	26	16	1.97
41163--41267	29	3.6	29	84	8	133	29	27	26	16	1.97
47749--48073	55	5.9	55	87	0	454	28	19	18	32	1.96
48441--48603	73	2.2	74	84	1	202	30	20	16	32	1.95
54069--54155	40	2.2	40	95	0	156	32	21	3	42	1.70
55152--55314	81	2.0	81	85	4	222	30	20	11	37	1.88
55330--56039	59	12.0	59	86	0	963	30	20	15	34	1.94
56004--56076	37	2.0	37	91	0	119	30	17	21	30	1.97
56041--56579	59	9.1	59	87	1	758	31	20	14	33	1.92
55855--56253	216	1.9	214	90	2	638	31	19	15	33	1.93
58318--58360	20	2.2	20	86	0	59	37	16	11	34	1.85
67275--68592	59	22.3	59	87	0	1866	30	19	15	33	1.93
68557--68629	37	2.0	37	91	0	119	30	17	21	30	1.97
68594--70436	59	31.3	59	87	1	2600	31	20	15	33	1.93
68377--68806	216	2.0	215	84	4	571	32	19	15	33	1.92
73368--73644	81	3.4	81	89	0	383	29	21	11	36	1.90
73331--73643	162	1.9	162	83	1	403	30	22	11	36	1.89
73982--75038	59	17.9	59	87	0	1454	32	20	13	33	1.92
75355--75544	95	2.0	95	82	6	233	26	20	16	36	1.93
76412--76526	42	2.7	42	90	0	176	23	13	34	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82646--82683	20	1.9	20	100	0	76	28	10	21	39	1.86
84135--84166	16	2.0	16	93	0	55	43	3	0	53	1.16

Tables:   1

The End!