Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000272.1 Hibiscus syriacus cultivar Beakdansim tig00000506_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97149

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4704--5283
46
12.6
46
81
3
612
21
22
13
42
1.87
4774--4850
20
3.5
20
71
19
64
22
27
14
36
1.92
4868--4944
20
3.5
20
69
24
57
22
27
10
40
1.86
4704--5283
185
3.1
185
86
2
772
21
22
13
42
1.87
4718--5283
139
4.1
139
81
1
670
21
21
13
43
1.87
5632--5794
74
2.2
74
84
4
213
25
22
14
38
1.92
9184--9330
58
2.5
58
84
7
201
34
12
19
33
1.89
9702--9908
68
3.0
68
86
2
283
34
13
23
29
1.92
9840--10137
80
3.7
80
90
1
454
37
13
22
26
1.91
12401--12452
26
2.0
26
92
0
86
34
21
23
21
1.97
12471--12509
20
2.0
20
94
0
69
23
15
30
30
1.95
14642--14680
13
3.1
13
88
3
53
48
2
7
41
1.45
21074--21164
45
2.0
46
91
2
148
25
19
27
27
1.99
21184--21221
20
1.9
20
100
0
76
21
15
31
31
1.94
27607--27657
20
2.5
20
84
6
59
45
23
0
31
1.53
29063--29238
39
4.4
39
78
4
172
30
22
28
18
1.97
29613--29651
20
2.0
20
85
10
53
7
15
51
25
1.70
33914--33975
30
2.1
30
84
0
79
35
19
6
38
1.77
38186--38213
14
2.0
14
100
0
56
64
21
0
14
1.29
41453--41521
30
2.3
31
87
2
95
31
15
15
36
1.90
42830--42874
22
2.1
22
87
4
65
24
28
26
20
1.99
43433--43518
23
3.7
23
79
13
104
27
26
25
19
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43759--43821
30
2.1
30
93
0
108
34
22
4
38
1.75
45947--46011
31
2.1
31
94
0
112
26
12
12
49
1.75
47014--47665
6
110.3
6
96
3
1234
50
16
0
33
1.46
50792--50835
22
2.0
22
95
0
79
18
15
18
47
1.83
59600--59675
23
3.4
22
78
12
84
25
21
32
21
1.97
65382--65444
22
2.9
21
88
11
92
17
20
41
20
1.91
69990--70035
20
2.3
20
85
3
58
50
0
17
32
1.47
71196--71252
3
17.7
3
89
7
53
40
1
0
57
1.09
71216--71240
2
12.5
2
100
0
50
48
0
0
52
1.00
72613--72641
12
2.3
13
94
5
51
24
3
0
72
1.00
75959--76031
22
3.4
22
73
16
62
19
15
8
57
1.62
78574--78624
14
3.7
15
78
21
67
82
3
13
0
0.81
78581--78610
11
2.6
11
94
5
51
83
3
13
0
0.77
78563--78624
26
2.4
25
89
5
97
80
3
16
0
0.83
83344--83420
22
3.5
22
94
0
136
33
11
12
41
1.80
84098--85041
76
12.4
76
96
0
1701
23
19
22
34
1.96
84098--85041
305
3.1
305
96
0
1730
23
19
22
34
1.96
85176--85221
3
15.7
3
86
8
60
34
0
0
65
0.93
85185--85224
19
2.1
19
95
0
71
40
0
0
60
0.97
94008--94056
22
2.2
23
96
3
91
40
22
14
22
1.90
96409--96486
17
4.8
16
75
21
63
46
10
8
34
1.69

Tables:   1

The End!