Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002720.1 Hibiscus syriacus cultivar Beakdansim tig00005612_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  242320

Tables:   1   2   

This is table  2  of  2  ( 166 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
166308--166354
15
2.8
17
71
15
53
31
27
14
25
1.95
166432--166473
15
2.8
15
96
0
75
26
16
23
33
1.96
166486--166551
27
2.4
27
92
0
105
37
10
15
36
1.82
172487--172548
31
2.1
31
82
11
76
32
6
6
54
1.51
174795--174906
51
2.2
51
98
0
215
46
8
15
30
1.74
176039--176096
21
2.8
21
81
0
71
15
15
31
37
1.89
177230--177280
2
25.5
2
100
0
102
50
0
0
49
1.00
181942--181999
27
2.1
27
80
0
62
25
15
15
43
1.86
190201--190234
2
17.0
2
100
0
68
50
0
0
50
1.00
190332--190389
24
2.5
21
75
25
55
39
5
22
32
1.76
190500--190542
21
2.0
21
86
9
59
32
6
20
39
1.80
190587--190682
18
4.9
20
82
11
110
20
19
30
29
1.97
190587--190674
38
2.2
40
88
4
135
19
20
29
30
1.97
196799--196850
19
2.7
19
93
0
86
30
17
32
19
1.95
196917--196948
15
2.1
15
100
0
64
25
21
34
18
1.96
197605--197700
18
4.9
19
80
11
106
20
19
30
29
1.97
197605--197700
38
2.5
39
89
3
149
20
19
30
29
1.97
203072--203167
13
7.5
13
66
21
60
50
15
9
25
1.74
203060--203170
25
4.4
25
86
6
143
49
15
9
25
1.75
203973--204642
135
5.0
135
82
3
712
35
17
16
31
1.92
205181--205251
13
5.2
13
81
8
70
4
16
0
78
0.90
205209--205252
6
7.0
6
87
10
52
4
15
0
79
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
205949--206007
10
5.9
10
76
9
50
10
11
0
77
0.98
205959--206015
12
4.3
13
76
17
55
7
15
0
77
0.98
205969--206015
24
1.9
24
91
4
76
6
17
0
76
0.98
205969--206044
25
3.0
25
80
14
77
7
17
0
75
1.04
213993--214027
17
2.0
18
88
5
54
54
5
2
37
1.39
214114--214218
37
2.8
37
85
0
138
40
13
14
31
1.84
214679--214771
22
4.2
21
71
17
73
27
6
2
63
1.30
214987--215022
18
1.9
19
88
5
56
30
5
0
63
1.17
215059--215107
2
24.5
2
100
0
98
48
0
0
51
1.00
220562--220638
22
3.5
22
90
0
127
37
25
14
22
1.92
221462--222942
106
14.0
106
88
2
2050
34
24
17
23
1.96
223673--223777
37
2.8
37
88
0
156
40
14
15
30
1.87
224545--224579
16
2.1
16
89
5
52
28
5
0
65
1.15
224615--224655
2
20.5
2
84
0
55
41
0
0
58
0.98
224612--224678
14
4.9
14
83
8
66
34
1
0
64
1.03
224639--224678
4
10.2
4
84
15
57
25
2
0
72
0.97
224639--224699
23
2.6
24
86
2
79
19
4
1
73
1.10
227752--227829
25
3.1
25
88
0
111
44
15
14
25
1.84
227934--227967
2
16.5
2
93
6
59
50
2
0
47
1.16
228971--229002
16
2.0
16
93
0
55
40
0
0
59
0.97
228982--229032
25
2.0
25
88
7
77
43
0
0
56
0.99
228992--229040
25
1.9
25
83
4
62
46
0
2
51
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
239648--239718
24
3.0
24
80
0
88
21
11
15
52
1.74
239878--239937
2
30.5
2
93
3
104
46
1
0
51
1.10

Tables:   1   2

The End!