genome.fa.s2721.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002721.1 Hibiscus syriacus cultivar Beakdansim tig00005613_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50361

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3068--3107	21	1.9	21	89	0	62	25	40	25	10	1.86
10412--10450	21	1.9	21	89	5	62	48	5	2	43	1.38
12735--12792	23	2.6	21	84	13	64	50	1	5	43	1.35
12734--12793	22	2.8	21	78	12	59	50	1	5	43	1.34
13181--13292	37	3.0	37	92	0	188	41	13	12	33	1.82
13689--13751	23	2.8	22	76	4	63	25	4	6	63	1.38
13872--13946	35	2.1	36	82	7	89	21	5	1	72	1.13
18016--18103	32	2.8	32	94	0	149	31	13	22	31	1.93
18639--18926	110	2.6	110	92	0	486	35	21	17	26	1.95
20044--20192	37	4.0	37	95	0	262	40	14	14	31	1.85
20689--20738	25	2.1	23	79	17	57	26	4	2	68	1.18
20725--20836	2	56.5	2	98	1	217	49	0	0	50	1.00
21044--21099	25	2.2	25	84	12	69	21	7	1	69	1.22
24671--24700	2	15.5	2	93	6	53	46	0	0	53	1.00
25790--25829	19	2.1	19	100	0	80	17	50	12	20	1.78
25858--25901	21	2.0	22	82	4	54	34	27	15	22	1.95
27488--27544	21	2.7	21	94	0	96	17	29	28	24	1.97
27665--27736	26	2.8	26	97	0	135	31	20	23	23	1.98
30177--30278	23	4.6	22	82	3	116	25	25	24	24	2.00
30176--30297	44	2.8	42	82	9	129	24	22	26	26	2.00
36224--36280	4	13.8	4	85	7	51	33	0	1	64	1.04
40205--40308	34	3.2	34	60	10	81	39	23	11	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40129--40551	64	6.6	64	90	1	641	35	19	13	30	1.91
40521--41162	309	2.1	309	88	0	953	37	22	14	25	1.92
41266--41675	86	4.8	86	82	1	444	36	20	17	25	1.94
41229--41656	172	2.5	172	83	3	506	37	20	17	24	1.94
43615--43660	17	2.7	17	86	0	65	21	0	2	76	0.90
47439--47484	20	2.2	21	96	3	85	30	6	13	50	1.66

Tables:   1

The End!