genome.fa.s2722.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002722.1 Hibiscus syriacus cultivar Beakdansim tig00005615_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86367

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341--382	16	2.6	17	81	11	52	21	50	19	9	1.75
385--487	29	3.6	29	83	7	131	33	2	21	41	1.68
385--496	28	3.9	28	81	8	129	34	2	20	41	1.66
7917--8069	28	5.4	28	79	7	125	35	3	17	42	1.68
8010--8076	30	2.3	30	86	2	91	31	1	17	49	1.56
9937--10014	22	3.4	23	80	7	79	50	0	0	50	1.00
9963--10038	31	2.4	29	79	12	80	48	2	0	48	1.15
10050--10127	26	2.9	25	81	14	77	43	1	1	53	1.16
10087--10138	17	3.1	16	75	2	50	48	1	1	48	1.24
12895--13146	55	4.6	55	79	6	251	31	24	17	26	1.97
13158--13272	37	3.1	37	88	3	169	23	19	19	38	1.93
14416--14540	47	2.6	48	74	16	123	12	13	0	74	1.08
14438--14546	8	13.1	9	67	22	53	11	12	0	75	1.06
14416--14531	16	7.2	16	69	23	68	12	13	0	74	1.08
14495--14554	28	2.1	28	87	6	86	13	13	0	73	1.10
14430--14503	7	9.9	7	73	13	58	13	13	0	72	1.11
14431--14542	34	3.1	37	75	13	108	11	13	0	75	1.06
18933--18975	22	2.0	22	86	9	61	37	30	18	13	1.90
27561--27594	14	2.4	14	90	0	50	32	14	14	38	1.87
27591--27629	20	2.0	20	84	0	51	33	17	7	41	1.79
27603--27669	15	4.5	15	79	3	73	32	17	7	41	1.78
27603--27676	30	2.5	30	93	2	123	31	18	6	43	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28557--28613	29	2.0	29	100	0	114	36	17	14	31	1.89
36336--36377	14	2.9	14	85	3	57	76	0	2	21	0.90
36603--36753	36	4.1	36	80	4	151	41	6	4	47	1.50
36544--36759	36	5.9	37	75	14	148	42	6	5	46	1.51
37333--37839	163	3.1	164	86	2	707	22	21	26	29	1.99
41193--41238	19	2.4	19	96	0	83	65	10	13	10	1.48
44333--44374	14	2.9	14	85	3	57	76	0	2	21	0.90
44600--44750	36	4.1	36	80	4	151	41	6	4	47	1.50
44541--44756	36	5.9	37	75	14	148	42	6	5	46	1.51
46158--46206	20	2.5	20	82	0	62	61	0	20	18	1.35
48116--48230	51	2.3	51	90	0	176	49	10	3	36	1.54
51645--51722	41	1.9	41	91	0	129	21	23	24	30	1.99
51655--51723	20	3.4	20	68	18	61	21	23	23	31	1.98
52507--52533	6	4.5	6	100	0	54	0	14	51	33	1.43
52610--52714	41	2.6	41	93	0	174	31	24	21	21	1.98
53519--53560	22	2.0	21	85	4	57	47	0	0	52	1.00
55766--55793	2	14.0	2	100	0	56	50	0	0	50	1.00
55853--55980	65	2.0	65	90	0	202	34	13	18	33	1.90
59709--59750	18	2.3	18	95	0	75	35	4	30	28	1.78
59717--59759	18	2.3	18	84	4	50	41	6	23	27	1.80
61921--61953	5	6.6	5	100	0	66	39	0	0	60	0.97
66777--66841	32	2.0	32	81	0	76	32	20	16	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70863--71071	5	41.8	5	98	0	328	39	15	20	24	1.91
71152--71233	12	6.9	11	74	19	67	58	2	0	39	1.11
71152--71241	22	3.8	23	75	17	71	58	2	0	38	1.10
71170--71238	2	36.0	2	72	18	58	56	2	0	40	1.14
71165--71238	10	6.7	11	80	14	82	56	2	0	40	1.13
71165--71233	34	2.0	34	83	5	86	56	2	0	40	1.14
71223--71574	5	70.8	5	97	1	582	57	18	2	21	1.51
76133--76178	24	1.9	24	86	8	67	2	17	4	76	1.06
77455--77654	42	4.7	42	80	5	199	34	17	19	30	1.94
79832--79869	20	1.9	20	94	0	67	31	34	15	18	1.92
85744--85823	23	3.5	24	69	17	73	25	25	22	27	2.00

Tables:   1

The End!