Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002724.1 Hibiscus syriacus cultivar Beakdansim tig00005618_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116615

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3554--3709
64
2.5
61
86
8
201
25
18
25
31
1.98
3554--3759
64
3.3
64
78
11
196
25
17
24
32
1.97
4203--4256
11
5.3
11
85
14
64
72
0
0
27
0.85
4208--4255
3
15.7
3
83
16
55
70
0
0
29
0.87
4383--4429
12
4.0
11
84
13
58
63
0
2
34
1.06
4388--4429
3
14.3
3
85
14
61
66
0
2
30
1.04
4560--4607
3
15.7
3
87
12
71
62
0
2
35
1.07
4956--5063
34
3.0
37
92
6
179
36
9
13
40
1.77
7380--7482
53
1.9
53
90
2
161
34
12
8
43
1.74
7976--8015
20
2.0
20
95
0
71
20
12
15
52
1.74
8864--8912
20
2.5
19
83
3
71
38
8
4
48
1.52
8966--9040
33
2.3
33
97
0
141
38
10
14
36
1.81
26627--26664
19
2.0
20
89
5
60
42
7
18
31
1.79
29473--29505
3
10.7
3
93
6
57
63
0
3
33
1.10
29463--29505
13
3.5
13
90
6
63
62
0
4
32
1.15
29701--30107
113
3.6
112
91
1
627
32
16
22
28
1.95
30029--30150
48
2.5
48
94
0
217
33
17
20
28
1.95
29701--30107
225
1.8
225
89
2
647
32
16
22
28
1.95
31280--31318
12
3.3
12
82
3
53
7
12
0
79
0.93
31281--31348
28
2.4
28
74
16
68
7
16
0
76
1.00
34867--34932
25
2.7
24
79
11
62
66
1
10
21
1.30
38513--38542
11
2.7
11
89
0
51
46
10
20
23
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42917--42951
11
3.2
11
92
8
54
42
8
17
31
1.79
46587--46622
16
2.2
16
95
0
63
47
27
2
22
1.65
49705--49747
21
2.0
21
100
0
86
46
16
4
32
1.67
50456--50500
19
2.4
19
96
0
81
35
24
11
28
1.90
50586--51281
258
2.7
257
86
4
927
34
17
16
32
1.92
51184--51260
21
3.7
21
71
13
77
33
22
18
25
1.96
51197--51276
42
1.9
42
94
0
142
33
22
21
22
1.97
51048--51856
239
3.4
237
84
3
995
33
16
15
34
1.90
51657--51757
42
2.4
41
79
6
114
31
19
21
26
1.98
60985--61040
22
2.6
22
91
5
89
48
26
0
25
1.52
61910--61941
2
16.0
2
93
0
55
46
0
0
53
1.00
62871--62986
41
2.8
42
77
5
110
31
19
18
30
1.96
64066--64134
2
35.5
2
78
21
76
44
2
1
50
1.25
70834--70871
20
2.0
19
90
10
60
31
15
28
23
1.96
71609--71650
22
1.9
22
100
0
84
26
23
23
26
2.00
75466--75548
25
3.4
25
89
3
123
30
12
44
13
1.80
79660--79684
13
1.9
13
100
0
50
72
0
16
12
1.13
79668--79717
8
6.4
8
88
8
59
80
0
14
6
0.90
79668--79729
16
4.1
15
80
13
65
80
1
12
4
0.94
79658--79729
7
10.0
7
81
14
58
79
1
13
5
0.98
80962--81546
135
4.3
135
80
4
527
30
22
14
32
1.94
80962--81556
270
2.2
270
80
2
642
30
22
14
32
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81711--81736
3
8.7
3
100
0
52
34
0
0
65
0.93
83851--83883
8
4.4
8
85
14
52
60
0
0
39
0.97
93479--93539
22
2.7
24
75
12
74
47
16
6
29
1.72
104971--105005
17
2.1
17
94
0
61
17
28
11
42
1.83
109706--109749
20
2.2
20
88
4
63
36
2
2
59
1.23
109811--109863
26
1.9
26
85
11
70
39
1
1
56
1.21
109878--110234
118
3.1
117
81
8
378
39
9
3
47
1.53
110379--110748
122
3.0
121
81
8
451
37
10
4
47
1.60

Tables:   1

The End!