Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002726.1 Hibiscus syriacus cultivar Beakdansim tig00005623_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72273

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
276--324
2
24.5
2
100
0
98
51
0
0
48
1.00
1551--1595
5
9.2
5
81
13
58
64
0
0
35
0.94
1552--1601
10
4.8
11
85
11
70
64
0
0
36
0.94
1643--1762
39
3.4
35
75
14
113
42
5
5
47
1.47
1638--1949
32
9.1
32
74
17
179
42
7
6
44
1.56
1792--1846
12
4.7
12
71
13
51
38
9
9
43
1.68
1727--2030
32
9.0
32
73
16
163
42
7
4
45
1.55
2468--2962
201
2.5
202
80
2
557
27
22
19
31
1.97
11100--11186
13
6.1
15
82
16
71
63
1
0
35
1.02
11124--11183
11
5.1
11
79
20
68
61
0
0
38
0.96
11119--11197
13
6.0
13
81
11
81
58
0
1
40
1.06
11102--11187
9
9.0
9
70
22
52
61
1
0
37
1.04
11206--11644
72
6.0
72
82
7
429
42
7
4
46
1.51
11236--11684
37
12.1
36
79
10
376
42
6
4
46
1.51
11219--11687
75
6.4
74
81
8
424
42
6
4
46
1.51
14028--14270
30
8.3
30
77
8
234
56
10
15
18
1.66
14028--14270
59
4.2
58
77
10
212
56
10
15
18
1.66
14028--14253
89
2.5
89
81
4
258
56
10
15
18
1.66
14020--14249
119
1.9
120
81
9
283
56
10
14
19
1.66
15881--15907
2
13.5
2
100
0
54
51
0
0
48
1.00
25011--25126
59
2.0
60
82
5
146
39
12
13
33
1.83
25004--25135
59
2.2
60
80
6
144
39
12
12
36
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26143--26206
32
2.0
32
93
0
110
17
20
20
42
1.90
31454--31534
22
3.7
22
94
0
135
28
25
20
24
1.99
31454--31545
22
4.3
21
89
5
105
28
27
18
26
1.98
32242--32292
20
2.5
20
100
0
102
15
23
27
33
1.95
41222--41369
58
2.5
59
91
4
237
37
12
11
38
1.79
42091--42116
12
2.2
12
100
0
52
7
34
15
42
1.75
46620--48088
696
2.1
696
98
0
2832
35
20
14
30
1.92
54522--54559
16
2.4
16
95
0
67
55
0
2
42
1.14
54905--54949
21
2.1
21
87
0
63
46
6
13
33
1.69
56623--56674
25
2.1
25
85
7
70
69
7
1
21
1.24
56793--56843
22
2.4
21
90
6
77
60
9
5
23
1.50
61102--61199
43
2.3
43
98
0
187
21
20
17
40
1.91
62400--62550
75
2.0
75
98
0
293
31
21
12
34
1.91
63411--63567
64
2.5
64
78
10
169
35
19
18
26
1.95
63946--64026
29
2.8
29
94
3
137
43
16
23
17
1.88

Tables:   1

The End!