genome.fa.s2727.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002727.1 Hibiscus syriacus cultivar Beakdansim tig00005624_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  169216

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370--456	37	2.2	38	82	8	95	31	20	20	27	1.98
400--628	43	5.4	43	77	5	209	30	20	18	30	1.97
398--551	82	1.9	82	83	2	200	31	20	16	31	1.94
403--687	43	6.7	43	74	8	190	29	22	18	30	1.97
949--1236	60	4.8	60	83	1	335	35	1	36	26	1.67
953--1239	120	2.4	120	82	3	371	34	1	37	26	1.67
9157--9211	20	2.8	20	81	10	67	65	3	3	27	1.26
10093--10129	11	3.4	11	88	0	56	0	24	8	67	1.17
10548--10602	19	3.2	18	82	12	71	69	0	1	29	0.99
10557--10596	9	4.3	9	81	6	53	70	0	2	27	1.01
10758--11191	74	5.9	73	91	1	672	34	20	17	27	1.95
10760--11188	146	2.9	146	90	2	671	34	20	17	27	1.95
11866--11944	22	3.6	22	94	0	140	40	13	12	32	1.83
21688--21715	13	2.2	13	100	0	56	10	14	21	53	1.70
22079--22120	19	2.2	20	79	12	52	54	2	2	40	1.26
22061--22122	18	3.4	19	76	10	58	62	1	1	33	1.14
22366--22403	18	2.1	18	85	9	51	52	2	0	44	1.14
23190--23214	13	1.9	13	100	0	50	20	56	16	8	1.65
23838--23911	3	25.0	3	83	5	89	67	0	1	31	0.99
25097--25173	30	2.6	30	91	0	127	18	16	33	31	1.93
25181--25215	13	2.8	13	91	4	54	20	42	22	14	1.88
25194--25264	18	3.9	18	84	0	97	18	46	21	14	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28174--28248	31	2.4	31	77	2	78	14	24	32	29	1.95
28174--28297	63	2.0	63	82	3	151	17	25	29	27	1.98
29432--29527	43	2.2	43	79	3	104	42	4	3	50	1.37
31272--31359	26	3.4	26	98	0	167	17	29	3	50	1.62
35683--35711	5	5.8	5	100	0	58	82	0	0	17	0.66
36590--36815	113	2.0	113	97	0	425	28	24	16	30	1.97
38696--38743	19	2.9	15	77	22	51	68	2	8	20	1.26
45223--45332	32	3.5	31	86	2	103	18	22	30	29	1.97
52523--52574	2	26.0	2	100	0	104	50	0	0	50	1.00
56441--56492	21	2.5	21	81	3	70	23	23	19	34	1.96
56482--56575	21	4.5	21	93	1	145	38	17	23	21	1.93
56564--56678	20	5.7	20	82	6	124	33	26	17	22	1.96
56561--56698	41	3.4	41	82	6	172	35	25	16	22	1.95
56865--56907	21	2.0	21	100	0	86	23	44	13	18	1.86
57170--57228	20	3.0	20	87	0	73	15	18	22	44	1.87
57365--57419	25	2.2	24	78	15	58	20	9	18	52	1.71
58006--58044	14	2.8	14	84	0	51	35	0	17	46	1.49
58184--58236	19	2.8	19	100	0	106	47	16	20	15	1.83
58219--58248	14	2.1	14	100	0	60	43	20	23	13	1.86
58267--58342	20	3.8	20	89	0	116	15	19	23	40	1.90
58327--58356	14	2.1	14	93	0	51	10	23	23	43	1.83
58255--58361	34	3.0	34	75	15	106	15	21	22	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58565--58653	20	4.4	20	92	0	133	29	19	26	24	1.98
59389--59466	37	2.1	37	87	2	111	33	10	20	35	1.86
63284--63940	182	3.6	180	89	3	940	43	13	15	27	1.84
63284--63940	365	1.8	364	87	3	989	43	13	15	27	1.84
65003--65059	23	2.4	23	76	2	69	36	14	10	38	1.80
65012--65178	87	1.9	86	93	1	289	32	12	12	42	1.80
65095--65146	23	2.3	23	79	0	68	32	15	11	40	1.83
77257--77316	3	19.3	3	83	6	75	65	1	0	33	1.03
79120--79180	24	2.5	24	86	5	79	36	21	19	22	1.95
81307--81363	28	2.0	28	100	0	114	24	24	17	33	1.96
99170--99210	19	2.1	20	86	4	57	70	4	4	19	1.24
106457--106506	20	2.5	20	87	6	66	34	32	12	22	1.90
110177--110226	20	2.5	19	81	9	55	26	14	2	58	1.47
120544--120593	24	2.1	24	96	0	91	20	26	24	30	1.98
121513--121542	15	2.0	15	100	0	60	20	20	40	20	1.92
129901--129973	24	3.1	24	82	4	76	34	20	20	24	1.97
129910--129972	23	2.7	23	85	2	72	34	22	20	22	1.96
129997--130045	21	2.3	21	100	0	98	32	28	0	38	1.57
135801--135876	36	2.1	36	82	7	91	46	1	3	48	1.29
136022--136059	20	1.9	20	88	0	58	21	26	10	42	1.85
136389--136453	30	2.2	30	88	0	94	44	7	1	46	1.41
136437--136520	31	2.7	31	79	15	86	41	3	0	54	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136474--136534	25	2.4	25	75	5	61	49	0	0	50	1.00
136522--136547	6	4.3	6	100	0	52	80	0	0	19	0.71
136580--136697	31	4.0	30	74	17	113	50	0	6	42	1.28
136687--136733	18	2.6	18	86	3	58	38	0	12	48	1.41
137403--137456	25	2.1	26	86	3	74	64	0	0	35	0.94
143994--144207	58	3.7	57	75	8	155	42	10	8	38	1.70
144756--145427	157	4.3	157	83	6	757	49	5	16	28	1.67
144756--145440	161	4.4	158	83	7	739	49	5	16	28	1.66
144756--145440	310	2.2	308	84	7	856	49	5	16	28	1.66
152177--152213	19	1.9	19	94	0	65	43	10	5	40	1.63
152236--152282	16	2.7	18	84	15	55	72	2	4	21	1.12
152095--152314	117	1.8	116	87	7	316	55	5	3	35	1.40
153140--153194	3	18.3	3	100	0	110	67	0	0	32	0.91
153693--153734	16	2.4	19	84	15	63	54	0	0	45	0.99
153803--153827	12	2.1	12	100	0	50	60	0	0	40	0.97
160883--160957	39	1.9	39	81	5	89	36	21	14	28	1.93
160960--160993	17	2.0	17	94	0	59	26	26	11	35	1.91
164281--164318	19	2.0	19	94	0	67	36	18	26	18	1.94
169061--169094	15	2.1	17	89	10	54	38	11	8	41	1.73

Tables:   1

The End!