Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002728.1 Hibiscus syriacus cultivar Beakdansim tig00005625_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72151

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3105--3186
41
2.0
40
92
2
137
36
8
26
28
1.86
11898--11939
22
2.0
22
90
4
68
40
19
9
30
1.83
12756--12780
12
2.1
12
100
0
50
52
40
0
8
1.31
17143--17175
17
1.9
17
93
0
57
33
18
24
24
1.97
18111--18215
37
2.8
37
83
0
138
40
15
12
32
1.84
18633--18679
23
2.0
23
84
15
62
27
2
0
70
0.99
18714--18743
2
15.5
2
93
6
53
46
0
0
53
1.00
18799--18823
2
12.5
2
100
0
50
48
0
0
52
1.00
18928--18981
22
2.5
22
79
11
58
29
3
1
64
1.21
19102--19156
19
2.8
19
75
20
51
21
9
3
65
1.37
23446--23503
16
3.6
16
86
9
73
82
5
10
1
0.89
23448--23506
25
2.2
25
85
11
73
83
5
10
1
0.88
24976--26662
106
15.9
106
92
0
2654
33
25
18
22
1.96
27328--27432
37
2.8
37
85
4
140
40
15
14
29
1.86
28137--28182
22
2.0
23
83
4
58
30
4
0
65
1.12
28147--28201
12
4.5
12
76
19
51
29
1
0
69
0.99
28148--28216
22
3.1
22
73
18
63
26
2
0
71
1.00
31431--31594
29
5.7
28
72
10
107
40
18
21
19
1.92
31449--31595
58
2.5
57
79
3
152
39
18
21
20
1.93
35332--35382
25
2.0
26
88
3
77
41
7
19
31
1.80
41950--41981
15
2.1
16
94
5
57
6
25
18
50
1.70
42732--42765
16
2.1
16
94
0
59
32
26
8
32
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43353--43392
20
2.0
20
85
9
55
55
0
2
42
1.13
45300--45393
12
7.5
12
76
8
62
42
3
5
48
1.41
45347--45393
2
23.5
2
100
0
94
51
0
0
48
1.00
48790--48826
19
1.9
19
88
0
56
24
5
2
67
1.25
49040--49128
27
3.3
27
98
0
169
19
11
32
37
1.87
53097--53168
24
3.0
24
85
2
101
50
18
12
19
1.78
53101--53169
12
5.8
12
75
10
61
49
18
14
17
1.80
53106--53192
24
3.7
23
82
3
84
48
18
13
19
1.81
54157--54191
18
1.9
18
88
0
52
28
17
0
54
1.43
55503--55566
13
4.5
13
76
17
65
17
18
45
18
1.86
55497--55551
18
2.9
18
81
8
65
16
20
45
18
1.86
55503--55565
31
2.0
31
87
0
90
15
19
46
19
1.85
57109--57137
15
1.9
15
100
0
58
34
6
10
48
1.64
62511--62539
14
2.1
14
100
0
58
37
6
13
41
1.72
67140--67219
22
3.9
20
75
15
74
47
1
0
51
1.08
67168--67233
30
2.1
31
83
11
80
46
1
0
51
1.10
67221--67266
17
2.6
18
80
10
51
41
2
2
54
1.25
67413--67460
21
2.3
20
79
13
53
52
0
4
43
1.20
67735--67766
16
2.1
16
94
5
57
53
6
9
31
1.58

Tables:   1

The End!