Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000273.1 Hibiscus syriacus cultivar Beakdansim tig00000507_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127352

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5012--5057
20
2.3
19
85
14
58
26
15
8
50
1.73
6577--6619
21
2.0
21
86
0
59
37
20
18
23
1.94
19364--20449
541
2.0
541
97
0
2046
28
23
23
24
2.00
42128--42364
101
2.4
100
89
3
343
32
13
9
43
1.76
42701--43097
138
2.9
138
86
1
535
35
16
20
27
1.94
52018--52067
26
2.0
25
84
11
66
40
4
0
56
1.18
54852--54893
17
2.5
17
85
11
52
26
19
19
35
1.95
60092--60163
21
3.4
21
83
7
83
29
12
30
27
1.93
60498--60567
30
2.3
30
92
0
113
48
10
17
24
1.77
60513--60586
30
2.5
30
86
4
96
50
10
17
21
1.77
60938--61014
39
2.0
39
100
0
154
38
18
24
18
1.92
68941--69078
60
2.3
60
82
5
163
36
6
13
44
1.69
69529--69591
10
6.2
10
79
15
67
74
1
1
22
0.99
69579--69670
12
7.2
12
70
19
53
79
3
6
10
1.03
69574--69696
11
10.9
11
72
16
67
78
2
8
11
1.06
72271--72421
60
2.5
60
81
2
187
60
7
10
20
1.54
72269--72413
30
4.8
30
81
1
157
61
8
10
20
1.53
73602--73646
16
2.8
16
79
0
54
11
17
40
31
1.85
73778--73813
3
11.7
3
88
5
54
63
0
2
33
1.08
74053--74167
51
2.3
51
96
0
221
28
20
27
22
1.99
74155--74303
43
3.5
43
73
15
141
22
18
33
25
1.97
74243--74621
130
2.9
131
82
4
471
24
18
30
26
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74628--74849
65
3.4
66
79
8
222
39
13
21
25
1.91
74897--75057
37
4.5
35
69
13
105
42
11
14
31
1.81
75129--75191
32
2.0
32
90
0
99
30
23
15
30
1.96
76226--76275
15
3.1
16
86
13
68
0
14
6
80
0.90
76235--76280
21
2.1
23
88
8
69
0
15
8
76
1.02
76226--76275
16
3.1
15
86
11
64
0
14
6
80
0.90
76240--76288
21
2.4
20
78
18
64
0
16
6
77
0.96
79756--79840
30
3.0
28
80
16
97
61
7
10
21
1.52
79756--79833
25
2.9
26
83
12
88
60
6
11
21
1.53
84990--85109
31
3.8
31
78
11
127
40
2
2
55
1.27
85019--85101
22
3.9
21
70
13
62
43
1
2
53
1.21
84996--85094
33
3.0
33
78
7
103
43
3
3
50
1.33
85013--85093
11
7.5
11
69
13
51
41
2
2
53
1.27
87194--87322
32
3.9
33
81
8
122
27
16
3
52
1.58
103261--103358
42
2.3
43
85
5
128
28
1
15
55
1.47
103768--103798
11
2.8
11
90
0
53
22
9
3
64
1.38
104137--104186
21
2.3
21
89
3
73
74
14
8
4
1.20
115494--115622
32
3.9
34
77
11
126
29
15
3
51
1.61
115532--115622
34
2.8
33
85
8
114
28
14
4
52
1.60
115568--115630
34
2.0
32
82
14
78
30
15
3
50
1.60
116348--116422
5
14.8
5
78
8
71
14
4
4
77
1.06
116347--116423
15
5.1
14
81
7
82
14
3
3
77
1.05

Tables:   1

The End!