genome.fa.s2731.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002731.1 Hibiscus syriacus cultivar Beakdansim tig00005635_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  185687

Tables:   1   

This is table  1  of  1  ( 106 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3317--3531	76	2.9	76	91	2	328	58	13	0	27	1.39
3402--3528	44	3.2	42	67	28	114	60	12	0	25	1.37
3478--3525	25	2.0	24	87	4	69	62	12	0	25	1.30
7374--7430	21	2.7	21	76	10	62	68	3	8	19	1.31
9595--9632	18	2.1	18	90	0	58	7	7	5	78	1.07
14597--14643	17	2.8	17	71	12	51	21	4	6	68	1.30
20359--20429	29	2.4	29	97	0	133	21	25	26	26	1.99
28370--28402	17	1.9	17	93	0	57	39	0	0	60	0.97
28370--28407	15	2.4	16	86	8	51	36	0	2	60	1.11
28827--28870	19	2.2	21	88	11	67	45	2	2	50	1.27
29169--29194	2	13.0	2	100	0	52	50	0	0	50	1.00
33537--33585	27	1.9	26	84	12	66	57	0	10	32	1.32
34492--34563	36	2.0	37	86	8	103	30	13	13	41	1.84
35034--35657	109	5.9	107	81	7	558	22	19	25	33	1.97
35187--35657	109	4.4	109	86	3	569	21	19	25	33	1.97
35028--35657	218	3.0	210	80	8	679	22	19	25	32	1.97
36183--36352	65	2.6	65	93	0	297	37	12	18	31	1.88
36252--36709	102	4.5	102	94	0	781	37	13	20	29	1.90
36152--36469	167	1.9	169	92	1	541	37	12	20	29	1.89
37587--37637	22	2.3	22	96	0	93	25	11	27	35	1.91
38274--38336	20	3.0	21	77	13	67	1	15	6	76	1.07
38292--38344	11	4.9	10	74	17	52	0	15	5	79	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38275--38344	22	3.3	21	82	11	72	1	14	5	78	1.00
38292--38344	22	2.4	22	85	14	74	0	15	5	79	0.91
41437--41485	27	1.9	26	84	12	66	57	0	10	32	1.32
41886--41965	11	7.3	11	70	20	51	60	2	3	33	1.28
42386--42461	36	2.1	37	87	7	111	30	14	14	40	1.86
45981--46179	99	2.0	99	99	0	389	37	26	11	25	1.89
47338--47727	142	2.7	146	80	4	414	37	18	16	27	1.92
51055--51126	24	3.0	24	97	0	135	38	12	23	25	1.90
51833--51915	23	3.3	23	80	10	76	53	4	1	40	1.30
55789--55826	2	19.0	2	100	0	76	50	0	0	50	1.00
56369--56755	65	6.0	65	84	6	493	39	12	21	25	1.89
56471--56578	29	3.4	29	66	18	81	42	12	20	24	1.87
56391--56755	192	1.9	191	88	3	547	40	12	22	24	1.89
57666--58014	183	1.9	183	92	2	594	45	7	2	43	1.46
58140--58168	15	1.9	15	100	0	58	17	6	27	48	1.72
59127--59171	18	2.5	18	82	13	65	4	24	4	66	1.29
62909--62942	2	17.0	2	100	0	68	50	0	0	50	1.00
62960--63125	85	2.0	85	90	2	262	31	18	19	30	1.96
63104--63164	13	4.7	13	85	0	77	34	14	19	31	1.92
63097--63164	26	2.6	26	88	0	91	36	13	19	30	1.90
68362--68400	20	2.0	20	84	0	51	23	5	23	48	1.70
68575--68637	23	2.8	23	92	2	110	19	23	33	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78041--78084	19	2.3	18	77	11	52	25	0	11	63	1.27
78272--78318	15	3.2	15	78	3	60	23	2	0	74	0.93
78271--78315	7	6.0	8	77	12	51	24	2	0	73	0.95
78279--78334	22	2.5	23	83	13	73	26	1	1	69	1.08
78941--78971	14	2.2	14	94	0	53	48	6	16	29	1.70
79947--79988	16	2.9	15	82	10	52	16	21	4	57	1.58
81700--81764	31	2.1	31	83	11	80	24	7	1	66	1.27
82926--82960	18	1.9	18	88	11	54	51	5	0	42	1.25
83726--84581	182	4.7	182	89	2	1231	40	15	16	27	1.88
89173--89219	13	3.5	13	77	13	51	55	2	2	40	1.24
90655--90722	3	22.7	3	96	0	127	64	0	1	33	1.02
91049--92344	228	5.7	228	96	1	2291	28	20	13	37	1.91
93100--93220	22	5.5	22	89	0	188	40	12	13	33	1.82
94756--94856	41	2.6	39	83	9	118	23	23	26	25	2.00
97959--97990	17	1.9	17	93	6	57	0	15	0	84	0.63
99948--100003	27	2.1	27	86	0	76	60	8	10	19	1.55
101610--101668	30	1.9	32	82	6	77	61	1	6	30	1.32
102328--102374	13	3.5	13	77	13	51	55	2	2	40	1.24
103752--103797	3	15.3	3	100	0	92	65	0	0	34	0.93
109168--109239	28	2.4	29	81	9	83	15	8	1	75	1.11
109249--109409	4	38.8	4	70	24	72	21	6	1	71	1.15
109202--109320	40	2.9	40	78	12	118	20	6	0	72	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109329--109476	9	15.7	10	71	21	74	16	7	2	73	1.15
109205--109481	20	14.2	20	66	22	92	18	7	1	72	1.14
109313--109417	39	2.7	38	80	12	90	18	7	1	72	1.18
109353--109417	33	1.9	35	81	12	82	18	7	1	72	1.17
109329--109433	47	2.2	46	82	14	126	19	6	1	72	1.16
109340--109474	46	3.0	45	77	14	118	17	7	2	72	1.18
109427--109476	14	3.5	14	78	5	55	12	10	2	76	1.11
109175--109393	9	23.7	9	68	20	55	18	7	1	72	1.15
115083--115316	65	3.7	64	87	4	302	41	20	12	25	1.88
115451--115740	85	3.4	84	79	4	303	36	19	17	26	1.94
119795--119843	16	3.1	16	90	0	71	26	26	6	40	1.79
131773--131833	9	7.1	9	76	10	56	31	3	1	63	1.20
131790--131835	16	2.9	16	93	6	76	28	4	2	65	1.23
133338--133424	27	3.2	27	86	3	113	17	41	17	24	1.90
136391--136431	20	2.0	22	85	9	59	51	0	9	39	1.35
137912--137946	9	3.9	9	88	11	54	65	0	0	34	0.93
140922--141026	40	2.6	41	77	15	112	69	0	12	17	1.24
140954--141070	13	9.0	13	69	12	71	74	2	7	15	1.15
140959--141065	19	5.4	20	63	13	60	73	2	8	14	1.18
141087--141147	16	3.7	16	75	16	52	75	4	3	16	1.11
141317--141343	2	13.5	2	100	0	54	51	0	0	48	1.00
143278--143443	65	2.6	64	87	4	241	26	14	21	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144234--144265	17	1.9	16	93	6	55	0	9	0	90	0.45
144238--144263	10	2.6	10	100	0	52	0	7	0	92	0.39
150940--150996	22	2.7	21	83	5	69	22	24	24	28	2.00
157048--157168	64	1.9	65	82	5	156	36	26	18	19	1.94
157729--157791	21	3.0	21	86	4	81	26	23	22	26	2.00
157733--157791	22	2.8	21	84	5	73	27	23	23	25	2.00
159148--159197	22	2.3	22	92	0	82	16	36	6	42	1.72
160374--160425	19	2.7	19	96	0	95	17	23	32	26	1.96
162826--162858	13	2.5	13	95	0	57	24	42	30	3	1.70
163111--163143	17	1.9	17	93	0	57	45	12	6	36	1.66
162963--163198	129	1.8	128	83	2	312	31	19	13	34	1.91
165704--165881	89	2.0	91	89	2	279	20	24	25	29	1.99
167877--167915	13	3.0	13	88	0	60	23	25	23	28	1.99
167916--167975	30	2.0	29	87	3	84	25	30	18	26	1.98
172769--173004	45	5.2	44	91	2	355	44	11	21	22	1.83
180712--180781	12	5.8	12	75	6	61	17	14	18	50	1.79
180675--180779	48	2.2	48	83	6	124	19	17	16	47	1.83
180712--180783	24	3.0	24	87	0	108	18	13	18	50	1.79

Tables:   1

The End!