Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002732.1 Hibiscus syriacus cultivar Beakdansim tig00005636_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75379

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5971--6017
21
2.2
22
92
3
78
29
10
6
53
1.60
12368--12393
2
13.0
2
100
0
52
50
0
0
50
1.00
26272--26314
2
22.5
2
81
9
54
46
0
0
53
1.00
34746--34783
14
2.7
15
88
8
53
47
18
5
28
1.70
37479--37599
58
2.1
58
81
4
136
40
3
8
47
1.50
37779--37820
16
2.4
17
80
15
50
64
0
2
33
1.07
37791--37823
16
2.1
16
94
0
57
72
0
0
27
0.85
38601--38655
23
2.5
22
77
13
60
58
5
0
36
1.21
43746--43776
2
16.0
2
93
6
55
48
0
0
51
1.00
47633--47694
3
21.0
3
86
3
72
40
1
0
58
1.08
48849--48890
14
3.0
14
79
6
50
28
4
0
66
1.12
49309--49342
2
17.0
2
100
0
68
50
0
0
50
1.00
52402--52448
21
2.2
21
84
0
58
14
10
8
65
1.45
52415--52467
20
2.6
20
87
3
70
18
11
7
62
1.52
53475--53511
19
2.0
18
89
5
56
45
0
21
32
1.52
58062--58128
28
2.4
28
94
0
116
32
19
5
41
1.76
58131--58255
45
2.8
45
96
0
223
22
24
21
31
1.98
58198--58569
76
4.9
76
92
1
586
25
19
21
33
1.97
58198--58561
153
2.4
152
91
0
584
26
18
20
33
1.96
58503--58606
45
2.3
45
89
0
154
30
19
17
32
1.95
58553--58758
76
2.7
76
90
1
315
30
18
16
33
1.94
58274--58766
274
1.8
271
90
1
797
27
19
19
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58427--58682
121
2.1
121
88
0
377
29
19
17
33
1.95
58350--59084
197
3.7
197
88
1
1071
28
19
18
33
1.95
58629--58879
121
2.1
121
90
1
387
29
19
18
32
1.96
58700--58803
45
2.3
45
84
0
127
32
21
15
30
1.94
58745--58957
78
2.8
76
84
2
264
30
18
16
34
1.93
58904--59002
45
2.2
45
85
0
126
31
19
17
32
1.94
58821--59231
123
3.4
122
90
2
637
29
20
18
32
1.96
59024--59122
45
2.2
45
87
7
139
31
21
17
30
1.96
59142--59236
45
2.1
45
84
0
127
30
23
17
28
1.97
59398--59422
13
1.9
13
100
0
50
16
8
4
72
1.24
59419--59482
3
21.0
3
93
3
110
32
0
0
67
0.91
60617--60661
21
2.2
20
88
4
63
31
2
0
66
1.04
60635--60670
14
2.5
15
90
4
56
27
2
0
69
1.02
60621--60670
15
3.4
15
81
10
59
30
2
0
68
1.01
60651--60711
26
2.4
25
79
15
70
26
4
3
65
1.28
62511--62860
172
2.0
172
96
0
637
40
16
18
23
1.91
68072--68120
22
2.3
22
86
10
66
59
0
0
40
0.98
74604--74638
14
2.6
14
90
4
54
25
0
2
71
1.00

Tables:   1

The End!